FFCP PHASE1:Mm9::chr9:49313649..49313661,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=393|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr9:49313649..49313661,-|id=chr9:49313649..49313661,-|ontology_enrichment_celltype=CL:0000117!1.40e-13!23;CL:0000337!1.40e-13!23;CL:0000540!9.80e-13!33;CL:0000047!9.80e-13!33;CL:0000031!9.80e-13!33;CL:0000404!9.80e-13!33;CL:0000393!4.17e-11!39;CL:0000211!4.17e-11!39;CL:0002319!1.13e-08!43;CL:0000221!3.36e-08!44;CL:0000133!3.36e-08!44;CL:0000055!1.91e-07!50|ontology_enrichment_celltype_v019_2=CL:0000117,6.73e-40,23;CL:0000337,6.73e-40,23;CL:0000540,2.12e-26,33;CL:0000047,2.12e-26,33;CL:0000031,2.12e-26,33;CL:0000404,2.12e-26,33;CL:0000393,1.26e-21,39;CL:0000211,1.26e-21,39;CL:0002319,3.50e-19,43;CL:0000221,1.22e-18,44;CL:0000133,1.22e-18,44;CL:0002609,6.57e-15,6;CL:0002321,5.00e-10,70;CL:0002613,9.33e-09,3;CL:0002612,1.18e-08,3;CL:0002608,3.00e-08,3;CL:0000120,8.28e-08,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!2.09e-15!73;UBERON:0005743!2.09e-15!73;UBERON:0000073!7.81e-15!75;UBERON:0001016!7.81e-15!75;UBERON:0002346!1.71e-13!71;UBERON:0003075!1.71e-13!71;UBERON:0007284!1.71e-13!71;UBERON:0002020!1.88e-13!34;UBERON:0001049!7.78e-13!52;UBERON:0005068!7.78e-13!52;UBERON:0006241!7.78e-13!52;UBERON:0007135!7.78e-13!52;UBERON:0003056!8.22e-12!49;UBERON:0004121!1.48e-11!102;UBERON:0000924!1.48e-11!102;UBERON:0006601!1.48e-11!102;UBERON:0000955!2.33e-10!50;UBERON:0006238!2.33e-10!50;UBERON:0002780!3.03e-10!39;UBERON:0001890!3.03e-10!39;UBERON:0006240!3.03e-10!39;UBERON:0000033!3.27e-10!63;UBERON:0002616!3.62e-10!49;UBERON:0003080!3.67e-10!40;UBERON:0002791!4.19e-10!29;UBERON:0003528!4.19e-10!29;UBERON:0001893!4.19e-10!29;UBERON:0000956!8.92e-07!21;UBERON:0001869!8.92e-07!21;UBERON:0000203!8.92e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0002020,2.18e-32,34;UBERON:0000073,1.27e-24,54;UBERON:0003528,2.84e-22,29;UBERON:0002791,2.84e-22,29;UBERON:0001893,2.84e-22,29;UBERON:0002346,7.79e-22,64;UBERON:0003075,7.79e-22,64;UBERON:0007284,7.79e-22,64;UBERON:0001017,8.37e-22,73;UBERON:0001049,2.17e-21,52;UBERON:0005068,2.17e-21,52;UBERON:0006241,2.17e-21,52;UBERON:0007135,2.17e-21,52;UBERON:0001016,4.65e-21,75;UBERON:0004121,7.89e-20,95;UBERON:0000924,7.89e-20,95;UBERON:0006601,7.89e-20,95;UBERON:0010371,2.01e-18,73;UBERON:0003056,1.00e-16,49;UBERON:0002780,1.53e-15,39;UBERON:0001890,1.53e-15,39;UBERON:0006240,1.53e-15,39;UBERON:0000956,2.38e-15,21;UBERON:0001869,2.38e-15,21;UBERON:0000203,2.38e-15,21;UBERON:0003080,4.68e-15,40;UBERON:0002616,3.03e-14,46;UBERON:0000955,7.45e-14,47;UBERON:0006238,7.45e-14,47;UBERON:0010314,2.06e-13,92;UBERON:0001948,6.66e-13,5;UBERON:0002315,6.66e-13,5;UBERON:0002619,7.16e-11,17;UBERON:0002240,1.07e-10,6;UBERON:0005174,1.07e-10,6;UBERON:0001137,1.07e-10,6;UBERON:0000369,4.18e-09,5;UBERON:0002435,4.18e-09,5;UBERON:0000204,4.18e-09,5;UBERON:0010082,4.18e-09,5;UBERON:0002257,1.18e-08,3;UBERON:0002420,4.25e-08,8;UBERON:0007245,4.25e-08,8;UBERON:0010009,4.25e-08,8;UBERON:0010011,4.25e-08,8;UBERON:0000454,4.25e-08,8;UBERON:0000025,7.49e-08,114;UBERON:0003076,3.99e-07,12;UBERON:0003057,3.99e-07,12;UBERON:0004111,5.45e-07,122|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255129870453209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.588231488031014,0,0,0,0,0.367093504323363,0,0,0,0,0.279972843250725,0,0,0,0,0.257259436035947,0.286533439938757,0,1.21389876515759,3.1739458756322,1.26766280701236,0,0,0,0,0,0,0.384218305321555,1.34796496001021,2.16009501330705,2.10324961351382,1.71390590642282,1.54607978666129,1.46988959057945,1.62937300731002,2.75765635983006,0,1.40456071893706,1.99688493233117,1.58263545276233,4.20843160571084,2.6045668527838,0.837548997004143,0,1.22238598221448,5.30331453852602,2.84743361598206,1.3047961207771,0,0.0755715601067855,0,0,0,0,0,0,0,0.340860645156116,0.259786004602869,0,0,0,0,0,0,0,0.505524445014783,0,0,0,0.173485326766136,0,0,0.60289056221049,0.23517741427141,0,0,0.289198713839823,0,0.323533699894818,0,0,0,1.46390398505774,0.628340120440365,0,0,0,0,0.149790639404823,0.457500602818626,4.27224797183739,0,0.255715457330331,0.41557608911912,0.486723789203273,0.611036183101898,0,0,0,0.130120442962704,0,0.360124259610698,2.41127708537144,1.29269348387523,1.92170580427275,0.749613796477831,0.517406741478031,0.215567992932842,0,0.175951124163949,0,0.556094498451196,0,0,0.398068533636986,0,0,0,0,0.703578179943289,0.36012412292203,0.23674473558521,0,0.771335564436891,0,0,0,0.329119699826961,0.32833492815819,0,0,0,0,0.210289948564127,2.88132914661996,0,0.264450566663544,0.639864751605702,0.464473343720877,0,0.605050573870028,0.22237804384487,0,0.474529061544512,0.329397909448022,0,0,0.19496408711912,0,0,0.199141273254367,0.379335801906163,0.913988100877831,0,1.4255592949172,0.581857461502877,0.631222379012867,0.442655759869801,0,0,0,0,0,0,0,0,0,0,0,0.162135226775035,0,2.87536413054709,0,0,0,0,0,0,0,0,0.339490171550376,0.234690248288502,0,0,0.390267295715598,0,0.221464689648775,0,0,0,0,0,0,0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| ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=393 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr9:49313649..49313661,- | |||
|id=chr9:49313649..49313661,- | |||
|ontology_enrichment_celltype=CL:0000117!1.40e-13!23;CL:0000337!1.40e-13!23;CL:0000540!9.80e-13!33;CL:0000047!9.80e-13!33;CL:0000031!9.80e-13!33;CL:0000404!9.80e-13!33;CL:0000393!4.17e-11!39;CL:0000211!4.17e-11!39;CL:0002319!1.13e-08!43;CL:0000221!3.36e-08!44;CL:0000133!3.36e-08!44;CL:0000055!1.91e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,6.73e-40,23;CL:0000337,6.73e-40,23;CL:0000540,2.12e-26,33;CL:0000047,2.12e-26,33;CL:0000031,2.12e-26,33;CL:0000404,2.12e-26,33;CL:0000393,1.26e-21,39;CL:0000211,1.26e-21,39;CL:0002319,3.50e-19,43;CL:0000221,1.22e-18,44;CL:0000133,1.22e-18,44;CL:0002609,6.57e-15,6;CL:0002321,5.00e-10,70;CL:0002613,9.33e-09,3;CL:0002612,1.18e-08,3;CL:0002608,3.00e-08,3;CL:0000120,8.28e-08,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.09e-15!73;UBERON:0005743!2.09e-15!73;UBERON:0000073!7.81e-15!75;UBERON:0001016!7.81e-15!75;UBERON:0002346!1.71e-13!71;UBERON:0003075!1.71e-13!71;UBERON:0007284!1.71e-13!71;UBERON:0002020!1.88e-13!34;UBERON:0001049!7.78e-13!52;UBERON:0005068!7.78e-13!52;UBERON:0006241!7.78e-13!52;UBERON:0007135!7.78e-13!52;UBERON:0003056!8.22e-12!49;UBERON:0004121!1.48e-11!102;UBERON:0000924!1.48e-11!102;UBERON:0006601!1.48e-11!102;UBERON:0000955!2.33e-10!50;UBERON:0006238!2.33e-10!50;UBERON:0002780!3.03e-10!39;UBERON:0001890!3.03e-10!39;UBERON:0006240!3.03e-10!39;UBERON:0000033!3.27e-10!63;UBERON:0002616!3.62e-10!49;UBERON:0003080!3.67e-10!40;UBERON:0002791!4.19e-10!29;UBERON:0003528!4.19e-10!29;UBERON:0001893!4.19e-10!29;UBERON:0000956!8.92e-07!21;UBERON:0001869!8.92e-07!21;UBERON:0000203!8.92e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,2.18e-32,34;UBERON:0000073,1.27e-24,54;UBERON:0003528,2.84e-22,29;UBERON:0002791,2.84e-22,29;UBERON:0001893,2.84e-22,29;UBERON:0002346,7.79e-22,64;UBERON:0003075,7.79e-22,64;UBERON:0007284,7.79e-22,64;UBERON:0001017,8.37e-22,73;UBERON:0001049,2.17e-21,52;UBERON:0005068,2.17e-21,52;UBERON:0006241,2.17e-21,52;UBERON:0007135,2.17e-21,52;UBERON:0001016,4.65e-21,75;UBERON:0004121,7.89e-20,95;UBERON:0000924,7.89e-20,95;UBERON:0006601,7.89e-20,95;UBERON:0010371,2.01e-18,73;UBERON:0003056,1.00e-16,49;UBERON:0002780,1.53e-15,39;UBERON:0001890,1.53e-15,39;UBERON:0006240,1.53e-15,39;UBERON:0000956,2.38e-15,21;UBERON:0001869,2.38e-15,21;UBERON:0000203,2.38e-15,21;UBERON:0003080,4.68e-15,40;UBERON:0002616,3.03e-14,46;UBERON:0000955,7.45e-14,47;UBERON:0006238,7.45e-14,47;UBERON:0010314,2.06e-13,92;UBERON:0001948,6.66e-13,5;UBERON:0002315,6.66e-13,5;UBERON:0002619,7.16e-11,17;UBERON:0002240,1.07e-10,6;UBERON:0005174,1.07e-10,6;UBERON:0001137,1.07e-10,6;UBERON:0000369,4.18e-09,5;UBERON:0002435,4.18e-09,5;UBERON:0000204,4.18e-09,5;UBERON:0010082,4.18e-09,5;UBERON:0002257,1.18e-08,3;UBERON:0002420,4.25e-08,8;UBERON:0007245,4.25e-08,8;UBERON:0010009,4.25e-08,8;UBERON:0010011,4.25e-08,8;UBERON:0000454,4.25e-08,8;UBERON:0000025,7.49e-08,114;UBERON:0003076,3.99e-07,12;UBERON:0003057,3.99e-07,12;UBERON:0004111,5.45e-07,122 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255129870453209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.588231488031014,0,0,0,0,0.367093504323363,0,0,0,0,0.279972843250725,0,0,0,0,0.257259436035947,0.286533439938757,0,1.21389876515759,3.1739458756322,1.26766280701236,0,0,0,0,0,0,0.384218305321555,1.34796496001021,2.16009501330705,2.10324961351382,1.71390590642282,1.54607978666129,1.46988959057945,1.62937300731002,2.75765635983006,0,1.40456071893706,1.99688493233117,1.58263545276233,4.20843160571084,2.6045668527838,0.837548997004143,0,1.22238598221448,5.30331453852602,2.84743361598206,1.3047961207771,0,0.0755715601067855,0,0,0,0,0,0,0,0.340860645156116,0.259786004602869,0,0,0,0,0,0,0,0.505524445014783,0,0,0,0.173485326766136,0,0,0.60289056221049,0.23517741427141,0,0,0.289198713839823,0,0.323533699894818,0,0,0,1.46390398505774,0.628340120440365,0,0,0,0,0.149790639404823,0.457500602818626,4.27224797183739,0,0.255715457330331,0.41557608911912,0.486723789203273,0.611036183101898,0,0,0,0.130120442962704,0,0.360124259610698,2.41127708537144,1.29269348387523,1.92170580427275,0.749613796477831,0.517406741478031,0.215567992932842,0,0.175951124163949,0,0.556094498451196,0,0,0.398068533636986,0,0,0,0,0.703578179943289,0.36012412292203,0.23674473558521,0,0.771335564436891,0,0,0,0.329119699826961,0.32833492815819,0,0,0,0,0.210289948564127,2.88132914661996,0,0.264450566663544,0.639864751605702,0.464473343720877,0,0.605050573870028,0.22237804384487,0,0.474529061544512,0.329397909448022,0,0,0.19496408711912,0,0,0.199141273254367,0.379335801906163,0.913988100877831,0,1.4255592949172,0.581857461502877,0.631222379012867,0.442655759869801,0,0,0,0,0,0,0,0,0,0,0,0.162135226775035,0,2.87536413054709,0,0,0,0,0,0,0,0,0.339490171550376,0.234690248288502,0,0,0.390267295715598,0,0.221464689648775,0,0,0,0,0,0,0,0,0,0.234423373184406,0.163934945376675,0,0,0.780877488593277,0.861693590931196,0.955875191810208,0.668396022247182,0.283076530788832,0,0.876767573733936,0,0.321321316421807,0,0.35613120733451,0.325773918707152,0.329940245945071,0,0.242780636154981,0,0.188605079755898,0,0,0,0.363533729477506,0,0.316036757935816,0,0,0,0.18006109403131,0.258717367565509,0.214337035031592,0.354680467284547,0.535106452806212,0,0.304464949114599,0.23467170806371,0.21183207086382,0,0,0,0.241251699712623,0,0,0,0.370850604021019,0,0.206386867963223,0.555583582109135,0.188368457004691,0,0,0,0,0,0,0.158167996790568,0.203319467126849,0.86404272657441,1.67270636811575,0.436725127492355,0.404593039154462,0.165306911450672,0,0,0,0,0.149516546043979,0.330916980914195,0.194451188344048,0.387479470433193,0.506868376472335,0.234714477291508,0.2604087696879,0,0.241584120826006,0.288030006257865,0,0,0,0,0,0,0,0,0,0.0762068066549998,0,0,0,0,0,0,0,0,0,0.750729901804728,0.183151624267265,0.214368379079066,0,3.3885110557024,1.84130094602871,1.71868654031819,0.68741272937475,1.37016503954128,0.755393897389701,0,1.80128481289688,0.906284817968409,0,0.31136204275253,0,0,0.243106717068294,0.209613162627982,0,0.666740183404846,0.412070114477788,0.64183841918363,0.252697211763798,0.25347929989024,0.565879024158229,0.655490552289177,0.320125762024346,0.34461281373368,0.476293691283074,0.347652977834566,0.578727661391115,0,0.588795680537589,2.05721551431249,1.24233064311536,0,0.145346416632329,0.282328141245992,0.169229215783353,0.182927972872773,0.526139422875686,0.271608227691724,0,0.237270036248348,0.197008964751127,0.409231043169689,0.77468420592983,0.385813221962283,0.499621155875892,0.467863216890817,0.644613162144895,0.191288332068843,0,0 | |||
|short_description=p@chr9:49313649..49313661,- | |||
}} |
Revision as of 18:08, 14 September 2013
Short description: | p@chr9:49313649..49313661, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr9:49313649..49313661, - |
Coexpression cluster: | MCL_coexpression_mm9:393 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 6.73e-40 | 23 |
neuroblast (sensu Vertebrata) | 6.73e-40 | 23 |
neuron | 2.12e-26 | 33 |
neuronal stem cell | 2.12e-26 | 33 |
neuroblast | 2.12e-26 | 33 |
electrically signaling cell | 2.12e-26 | 33 |
electrically responsive cell | 1.26e-21 | 39 |
electrically active cell | 1.26e-21 | 39 |
neural cell | 3.50e-19 | 43 |
ectodermal cell | 1.22e-18 | 44 |
neurectodermal cell | 1.22e-18 | 44 |
neuron of cerebral cortex | 6.57e-15 | 6 |
embryonic cell | 5.00e-10 | 70 |
striatum neuron | 9.33e-09 | 3 |
neuron of the ventral spinal cord | 1.18e-08 | 3 |
hippocampal neuron | 3.00e-08 | 3 |
granule cell | 8.28e-08 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.