FFCP PHASE1:Mm9::chr9:7872951..7872976,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=88|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr9:7872951..7872976,+|id=chr9:7872951..7872976,+|ontology_enrichment_celltype=CL:0000063!5.33e-10!66;CL:0002563!3.96e-09!9;CL:0002251!3.96e-09!9;CL:0000838!1.48e-07!12;CL:0000239!4.81e-07!6;CL:0000677!4.81e-07!6;CL:0000212!4.81e-07!6;CL:0000584!4.81e-07!6;CL:0000084!5.28e-07!11;CL:0000827!5.28e-07!11|ontology_enrichment_celltype_v019_2=CL:0002563,1.22e-25,9;CL:0002251,1.22e-25,9;CL:0000239,3.97e-23,6;CL:0000677,3.97e-23,6;CL:0000584,3.97e-23,6;CL:0000075,9.59e-20,7;CL:0000066,3.31e-19,25;CL:0002076,6.39e-15,15;CL:0000223,7.18e-14,20;CL:0000682,3.28e-11,3;CL:0000791,7.52e-10,9;CL:0000789,7.52e-10,9;CL:0002420,7.52e-10,9;CL:0002419,7.52e-10,9;CL:0000790,7.52e-10,9;CL:0000084,5.15e-08,11;CL:0000827,5.15e-08,11;CL:0000624,1.82e-07,8;CL:0000838,2.52e-07,12;CL:0000542,9.66e-07,13;CL:0000051,9.66e-07,13|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000344!1.75e-12!15;UBERON:0001242!5.19e-11!13;UBERON:0000060!5.19e-11!13;UBERON:0001262!5.19e-11!13;UBERON:0004786!5.19e-11!13;UBERON:0003350!3.96e-09!9;UBERON:0004808!3.96e-09!9;UBERON:0001277!3.96e-09!9;UBERON:0004923!4.64e-09!24;UBERON:0000485!8.08e-07!11|ontology_enrichment_uberon_v019_2=UBERON:0003350,1.22e-25,9;UBERON:0004808,1.22e-25,9;UBERON:0001277,1.22e-25,9;UBERON:0000485,9.03e-21,11;UBERON:0000344,1.27e-18,15;UBERON:0001242,2.13e-17,13;UBERON:0001262,2.13e-17,13;UBERON:0004786,2.13e-17,13;UBERON:0004923,4.28e-11,24;UBERON:0000490,1.74e-08,66;UBERON:0003929,1.23e-07,55|phase1_expression=0,4.88565570695105,5.0049916332849,11.7961042409664,18.5331420080148,3.3575854382378,3.50418960893289,1.67860320474049,2.956563165185,3.7450324211519,0.513653904676515,0.398860794976682,2.22560948910567,0.699363219351979,0,0.202475267389826,0,0.473193248037357,0.959801035240171,0.84877930359606,0,0.397163804803541,0.261199789138935,0.799962113967033,1.60586496747019,2.29692785646008,2.58457197695445,1.29282739611533,0.570070258369122,0.252030129759931,0.886922042621219,0,0,0,1.1554064790051,0.664938581433969,1.63335485009895,2.09265815368454,0,3.66466620781659,1.76469446409304,2.04913645487534,1.94204141212461,0,0,0,0,0,0,0.388859798148567,0,0,0.503347818173209,0,1.68046899571232,0,0,0,0,0,0,0,0,0,0,0,0,0.384218305321555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.76823835312181,0,0.679971333707751,0,0,0.448026887097336,0,0.170430322578058,0,0.35333957451034,0,0,0,0,0.432982082022428,0,0,0.34255163915718,0.517875767294343,0.29688427812965,0.173485326766136,0,0.230615497256059,0.904335843315735,0.23517741427141,0.125666591329675,0.247194967734374,0,0,0,0,0,0,0,0,0.766371165625774,0.718890747035522,1.19980546198682,0.127070227073065,0,0,0,0,0,0,0,0,0.124406970610093,0,0,0,0,0,0,0,0,0,0.258703370739016,0,0,0,0,0,0,0.205782136407943,0,0.702213187313235,0,0.568326998791185,0,0,0,0,0,0,0,0,0.116765342367169,0,0,0.0810688095458557,0,0.439100230582101,0.134206418760372,0,0,0.330418782983798,0.793351699990633,0,0,0.128867461322093,0,0,0.190225626112559,0,0.329397909448022,0,0.198956472041151,0.19496408711912,0,0,0.199141273254367,0.189667900953082,0,0,0.203651327845314,0,0,0,0.147610147979602,0.156998727841375,0.123397163921801,0.592905254174298,0,0,0,0.202860121388503,0.241177159752417,0.25462585178142,0,0.162135226775035,0,0,0,0,0.505157755894224,0.179397413521912,0,0,0,0,0,0,0,0.714130922658041,0.195133647857799,0.157635144106191,0,0.159454768657487,0.491589944147214,0.172684981865896,0.578596234326046,0,0,0,0,0,0,0,0.252470927204373,0,0,0,0,0,0,0,0,0,0,0,0.178065603667255,0,0.164970122972535,0,0,0,0,0.295301892880773,0,0.258428293168221,0,0.356497378384721,0.316036757935816,0,2.06271086496374,0,0,0,0.428674070063185,0,0,0,0.304464949114599,0,0,0.882113592219848,0,0.161464426695906,0,0,0.328281799490123,0,0,0,0,0.185194527369712,0.188368457004691,0.410082683163076,0,0.509935289981566,0.69975726161829,0.276399947608848,0,0,0,0,0.209088296014469,0,0,0,0.26175594198403,0.129614973291793,0,0,0,0,0.194451188344048,0.129159823477731,0,0,0.2604087696879,0.104859344425711,0,0.288030006257865,0,0,0,0.129920822977795,0,0,0,0.147689527174577,0.302899349844443,0,0.201652370273681,0,0,0.116876902181569,0,0,0,0,0,0.187682475451182,0.36630324853453,0,0.501572104035363,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486213434136588,0.209613162627982,0,0,0,0,0,0,0,0.187283014939765,0,0.114870937911227,0,0,0,0,0,0,0,0,0,0,0.0846146078916765,0.365855945745545,0,0,0,0,0.0985044823755635,0,0,0,0,0,0.214871054048298,0,0,0|short_description=p@chr9:7872951..7872976,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=88 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr9:7872951..7872976,+ | |||
|id=chr9:7872951..7872976,+ | |||
|ontology_enrichment_celltype=CL:0000063!5.33e-10!66;CL:0002563!3.96e-09!9;CL:0002251!3.96e-09!9;CL:0000838!1.48e-07!12;CL:0000239!4.81e-07!6;CL:0000677!4.81e-07!6;CL:0000212!4.81e-07!6;CL:0000584!4.81e-07!6;CL:0000084!5.28e-07!11;CL:0000827!5.28e-07!11 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,1.22e-25,9;CL:0002251,1.22e-25,9;CL:0000239,3.97e-23,6;CL:0000677,3.97e-23,6;CL:0000584,3.97e-23,6;CL:0000075,9.59e-20,7;CL:0000066,3.31e-19,25;CL:0002076,6.39e-15,15;CL:0000223,7.18e-14,20;CL:0000682,3.28e-11,3;CL:0000791,7.52e-10,9;CL:0000789,7.52e-10,9;CL:0002420,7.52e-10,9;CL:0002419,7.52e-10,9;CL:0000790,7.52e-10,9;CL:0000084,5.15e-08,11;CL:0000827,5.15e-08,11;CL:0000624,1.82e-07,8;CL:0000838,2.52e-07,12;CL:0000542,9.66e-07,13;CL:0000051,9.66e-07,13 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000344!1.75e-12!15;UBERON:0001242!5.19e-11!13;UBERON:0000060!5.19e-11!13;UBERON:0001262!5.19e-11!13;UBERON:0004786!5.19e-11!13;UBERON:0003350!3.96e-09!9;UBERON:0004808!3.96e-09!9;UBERON:0001277!3.96e-09!9;UBERON:0004923!4.64e-09!24;UBERON:0000485!8.08e-07!11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003350,1.22e-25,9;UBERON:0004808,1.22e-25,9;UBERON:0001277,1.22e-25,9;UBERON:0000485,9.03e-21,11;UBERON:0000344,1.27e-18,15;UBERON:0001242,2.13e-17,13;UBERON:0001262,2.13e-17,13;UBERON:0004786,2.13e-17,13;UBERON:0004923,4.28e-11,24;UBERON:0000490,1.74e-08,66;UBERON:0003929,1.23e-07,55 | |||
|phase1_expression=0,4.88565570695105,5.0049916332849,11.7961042409664,18.5331420080148,3.3575854382378,3.50418960893289,1.67860320474049,2.956563165185,3.7450324211519,0.513653904676515,0.398860794976682,2.22560948910567,0.699363219351979,0,0.202475267389826,0,0.473193248037357,0.959801035240171,0.84877930359606,0,0.397163804803541,0.261199789138935,0.799962113967033,1.60586496747019,2.29692785646008,2.58457197695445,1.29282739611533,0.570070258369122,0.252030129759931,0.886922042621219,0,0,0,1.1554064790051,0.664938581433969,1.63335485009895,2.09265815368454,0,3.66466620781659,1.76469446409304,2.04913645487534,1.94204141212461,0,0,0,0,0,0,0.388859798148567,0,0,0.503347818173209,0,1.68046899571232,0,0,0,0,0,0,0,0,0,0,0,0,0.384218305321555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.76823835312181,0,0.679971333707751,0,0,0.448026887097336,0,0.170430322578058,0,0.35333957451034,0,0,0,0,0.432982082022428,0,0,0.34255163915718,0.517875767294343,0.29688427812965,0.173485326766136,0,0.230615497256059,0.904335843315735,0.23517741427141,0.125666591329675,0.247194967734374,0,0,0,0,0,0,0,0,0.766371165625774,0.718890747035522,1.19980546198682,0.127070227073065,0,0,0,0,0,0,0,0,0.124406970610093,0,0,0,0,0,0,0,0,0,0.258703370739016,0,0,0,0,0,0,0.205782136407943,0,0.702213187313235,0,0.568326998791185,0,0,0,0,0,0,0,0,0.116765342367169,0,0,0.0810688095458557,0,0.439100230582101,0.134206418760372,0,0,0.330418782983798,0.793351699990633,0,0,0.128867461322093,0,0,0.190225626112559,0,0.329397909448022,0,0.198956472041151,0.19496408711912,0,0,0.199141273254367,0.189667900953082,0,0,0.203651327845314,0,0,0,0.147610147979602,0.156998727841375,0.123397163921801,0.592905254174298,0,0,0,0.202860121388503,0.241177159752417,0.25462585178142,0,0.162135226775035,0,0,0,0,0.505157755894224,0.179397413521912,0,0,0,0,0,0,0,0.714130922658041,0.195133647857799,0.157635144106191,0,0.159454768657487,0.491589944147214,0.172684981865896,0.578596234326046,0,0,0,0,0,0,0,0.252470927204373,0,0,0,0,0,0,0,0,0,0,0,0.178065603667255,0,0.164970122972535,0,0,0,0,0.295301892880773,0,0.258428293168221,0,0.356497378384721,0.316036757935816,0,2.06271086496374,0,0,0,0.428674070063185,0,0,0,0.304464949114599,0,0,0.882113592219848,0,0.161464426695906,0,0,0.328281799490123,0,0,0,0,0.185194527369712,0.188368457004691,0.410082683163076,0,0.509935289981566,0.69975726161829,0.276399947608848,0,0,0,0,0.209088296014469,0,0,0,0.26175594198403,0.129614973291793,0,0,0,0,0.194451188344048,0.129159823477731,0,0,0.2604087696879,0.104859344425711,0,0.288030006257865,0,0,0,0.129920822977795,0,0,0,0.147689527174577,0.302899349844443,0,0.201652370273681,0,0,0.116876902181569,0,0,0,0,0,0.187682475451182,0.36630324853453,0,0.501572104035363,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486213434136588,0.209613162627982,0,0,0,0,0,0,0,0.187283014939765,0,0.114870937911227,0,0,0,0,0,0,0,0,0,0,0.0846146078916765,0.365855945745545,0,0,0,0,0.0985044823755635,0,0,0,0,0,0.214871054048298,0,0,0 | |||
|short_description=p@chr9:7872951..7872976,+ | |||
}} |
Revision as of 18:51, 14 September 2013
Short description: | p@chr9:7872951..7872976, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr9:7872951..7872976, + |
Coexpression cluster: | MCL_coexpression_mm9:88 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 1.22e-25 | 9 |
epithelial cell of alimentary canal | 1.22e-25 | 9 |
brush border epithelial cell | 3.97e-23 | 6 |
gut absorptive cell | 3.97e-23 | 6 |
enterocyte | 3.97e-23 | 6 |
columnar/cuboidal epithelial cell | 9.59e-20 | 7 |
epithelial cell | 3.31e-19 | 25 |
endo-epithelial cell | 6.39e-15 | 15 |
endodermal cell | 7.18e-14 | 20 |
M cell of gut | 3.28e-11 | 3 |
mature alpha-beta T cell | 7.52e-10 | 9 |
alpha-beta T cell | 7.52e-10 | 9 |
immature T cell | 7.52e-10 | 9 |
mature T cell | 7.52e-10 | 9 |
immature alpha-beta T cell | 7.52e-10 | 9 |
T cell | 5.15e-08 | 11 |
pro-T cell | 5.15e-08 | 11 |
CD4-positive, alpha-beta T cell | 1.82e-07 | 8 |
lymphoid lineage restricted progenitor cell | 2.52e-07 | 12 |
lymphocyte | 9.66e-07 | 13 |
common lymphoid progenitor | 9.66e-07 | 13 |
Ontology term | p-value | n |
---|---|---|
epithelium of mucosa | 1.22e-25 | 9 |
gastrointestinal system epithelium | 1.22e-25 | 9 |
intestinal epithelium | 1.22e-25 | 9 |
simple columnar epithelium | 9.03e-21 | 11 |
mucosa | 1.27e-18 | 15 |
intestinal mucosa | 2.13e-17 | 13 |
wall of intestine | 2.13e-17 | 13 |
gastrointestinal system mucosa | 2.13e-17 | 13 |
organ component layer | 4.28e-11 | 24 |
unilaminar epithelium | 1.74e-08 | 66 |
gut epithelium | 1.23e-07 | 55 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.