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MCL coexpression mm9:254: Difference between revisions

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{{MCL_coexpression_mm9
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|gostat_on_MCL_coexpression=
}}

Latest revision as of 14:58, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr10:75400042..75400078,+p@chr10:75400042..75400078
+
Mm9::chr10:79145051..79145067,+p6@Cdc34
Mm9::chr11:7097807..7097814,+p2@Igfbp1
Mm9::chr11:77694689..77694695,-p@chr11:77694689..77694695
-
Mm9::chr12:105652032..105652072,+p@chr12:105652032..105652072
+
Mm9::chr12:88504721..88504747,+p@chr12:88504721..88504747
+
Mm9::chr14:51724838..51724856,+p@chr14:51724838..51724856
+
Mm9::chr14:52530380..52530414,-p@chr14:52530380..52530414
-
Mm9::chr15:10288437..10288460,-p@chr15:10288437..10288460
-
Mm9::chr15:82286766..82286778,+p@chr15:82286766..82286778
+
Mm9::chr16:22939457..22939468,+p@chr16:22939457..22939468
+
Mm9::chr17:12586030..12586040,+p@chr17:12586030..12586040
+
Mm9::chr17:34998096..34998110,-p@chr17:34998096..34998110
-
Mm9::chr17:56260036..56260043,-p@chr17:56260036..56260043
-
Mm9::chr17:71439709..71439713,+p@chr17:71439709..71439713
+
Mm9::chr17:71553871..71553894,+p7@Lpin2
Mm9::chr18:20828571..20828599,+p@chr18:20828571..20828599
+
Mm9::chr1:132660649..132660660,-p@chr1:132660649..132660660
-
Mm9::chr2:32279527..32279549,-p2@Slc25a25
Mm9::chr2:4848530..4848543,+p@chr2:4848530..4848543
+
Mm9::chr4:150228125..150228159,+p4@Errfi1
Mm9::chr4:150228162..150228172,+p5@Errfi1
Mm9::chr4:150239482..150239517,+p@chr4:150239482..150239517
+
Mm9::chr4:150240485..150240505,+p@chr4:150240485..150240505
+
Mm9::chr4:150240916..150240941,+p@chr4:150240916..150240941
+
Mm9::chr4:150241156..150241181,+p@chr4:150241156..150241181
+
Mm9::chr5:136206163..136206180,+p@chr5:136206163..136206180
+
Mm9::chr5:65815567..65815578,-p@chr5:65815567..65815578
-
Mm9::chr7:147959034..147959049,+p@chr7:147959034..147959049
+
Mm9::chr8:121966378..121966412,+p@chr8:121966378..121966412
+
Mm9::chr9:107557382..107557401,-p@chr9:107557382..107557401
-
Mm9::chr9:46038187..46038279,+p@chr9:46038187..46038279
+
Mm9::chrX:98571698..98571712,+p5@Gjb1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
metabolising cell2.42e-085
endopolyploid cell2.42e-085
parenchymal cell2.42e-085
polyploid cell2.42e-085
hepatocyte2.42e-085

Uber Anatomy
Ontology termp-valuen
liver7.86e-3122
epithelial sac7.86e-3122
digestive gland7.86e-3122
epithelium of foregut-midgut junction7.86e-3122
anatomical boundary7.86e-3122
hepatobiliary system7.86e-3122
foregut-midgut junction7.86e-3122
hepatic diverticulum7.86e-3122
liver primordium7.86e-3122
septum transversum7.86e-3122
liver bud7.86e-3122
digestive tract diverticulum2.79e-2923
sac2.79e-2923
exocrine gland1.49e-2625
exocrine system1.49e-2625
abdomen element5.19e-2149
abdominal segment element5.19e-2149
abdominal segment of trunk5.19e-2149
abdomen5.19e-2149
subdivision of trunk8.30e-1766
mesenchyme1.11e-1561
entire embryonic mesenchyme1.11e-1561
trunk mesenchyme3.08e-1445
trunk region element5.54e-1379
epithelial tube6.28e-1247
trunk1.27e-1090
gut epithelium1.54e-0955
endocrine gland1.75e-0960
subdivision of digestive tract7.60e-09114
digestive system1.41e-08116
digestive tract1.41e-08116
primitive gut1.41e-08116
endo-epithelium1.51e-0869
foregut1.83e-0880
gland2.14e-0865
endoderm-derived structure2.54e-08118
endoderm2.54e-08118
presumptive endoderm2.54e-08118
unilaminar epithelium3.18e-0766
endocrine system3.86e-0772
immaterial anatomical entity7.24e-0779


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.00279653
MA0004.10.249193
MA0006.10.0844843
MA0007.10.0650029
MA0009.10.34692
MA0014.10.00423676
MA0017.11.12994
MA0019.10.213233
MA0024.10.312998
MA0025.10.541743
MA0027.11.90418
MA0028.10.0922372
MA0029.10.296544
MA0030.10.301487
MA0031.10.275007
MA0038.10.441799
MA0040.10.3568
MA0041.10.671813
MA0042.10.351952
MA0043.10.425142
MA0046.11.74017
MA0048.10.498149
MA0050.10.297005
MA0051.10.148819
MA0052.10.363203
MA0055.10.055379
MA0056.10
MA0057.10.0155586
MA0058.10.146267
MA0059.10.158166
MA0060.10.225289
MA0061.10.142247
MA0063.10
MA0066.10.137327
MA0067.10.640638
MA0068.10.100855
MA0069.10.363473
MA0070.10.355772
MA0071.10.616103
MA0072.10.349077
MA0073.11.84024e-09
MA0074.10.375328
MA0076.10.0292731
MA0077.10.332127
MA0078.10.168681
MA0081.10.407252
MA0083.10.424485
MA0084.10.946331
MA0087.10.389127
MA0088.10.0834936
MA0089.10
MA0090.10.209755
MA0091.10.560893
MA0092.10.800018
MA0093.10.0986498
MA0095.10
MA0098.10
MA0100.10.359474
MA0101.10.167077
MA0103.10.510552
MA0105.10.0404555
MA0106.10.173498
MA0107.10.264307
MA0108.20.228803
MA0109.10
MA0111.10.843673
MA0113.10.156275
MA0114.11.41522
MA0115.11.91816
MA0116.10.673063
MA0117.10.400878
MA0119.10.0436907
MA0122.10.417182
MA0124.10.59287
MA0125.10.527588
MA0130.10
MA0131.10.210184
MA0132.10
MA0133.10
MA0135.10.4556
MA0136.10.128392
MA0139.10.490261
MA0140.10.359318
MA0141.11.73661
MA0142.10.264434
MA0143.10.166176
MA0144.10.759985
MA0145.10.175368
MA0146.10.063962
MA0147.10.0596042
MA0148.11.97894
MA0149.10.0453
MA0062.20.0130026
MA0035.20.365734
MA0039.27.15257e-07
MA0138.20.591583
MA0002.20.312207
MA0137.21.27133
MA0104.20.0306359
MA0047.20.86636
MA0112.20.0999019
MA0065.20.580006
MA0150.10.49998
MA0151.10
MA0152.10.440841
MA0153.11.18451
MA0154.10.200359
MA0155.10.501538
MA0156.10.287664
MA0157.10.677848
MA0158.10
MA0159.10.864986
MA0160.10.970678
MA0161.10
MA0162.10.00220627
MA0163.10.00154218
MA0164.10.403627
MA0080.20.265803
MA0018.20.417406
MA0099.20.200722
MA0079.27.23246e-15
MA0102.20.996522
MA0258.10.254714
MA0259.10.0533374
MA0442.10
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