FFCP PHASE1:Hg19::chr1:154540296..154540327,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1141 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1962 | |||
|TSSclassifier=strong | |||
|UniProt=P17787,Q5SXY3 | |||
|association_with_transcript=39bp_to_ENST00000368476,NM_000748,uc001ffg.2_5end | |||
|coexpression_cluster_id=C1405 | |||
|description=CAGE_peak_1_at_CHRNB2_5end | |||
|id=chr1:154540296..154540327,+ | |||
|ontology_enrichment_celltype=CL:0000047!1.88e-09!8;CL:0000540!1.51e-07!6;CL:0000031!1.51e-07!6;CL:0000404!1.51e-07!6;CL:0000221!2.83e-07!71 | |||
|ontology_enrichment_celltype_v019=CL:0000540;4.62e-12;6!CL:0000404;4.62e-12;6!CL:0002319;1.06e-08;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,1.85e-15,8;CL:0000540,4.09e-12,6;CL:0000031,4.09e-12,6;CL:0000404,4.09e-12,6;CL:0002319,1.03e-08,25 | |||
|ontology_enrichment_development_v019=UBERON:0006601;2.54e-18;82!CL:0000031;4.62e-12;6!UBERON:0006215;1.67e-07;3 | |||
|ontology_enrichment_disease=DOID:171!5.17e-09!10;DOID:169!7.60e-08!6;DOID:3095!9.21e-08!22;DOID:2994!9.21e-08!22 | |||
|ontology_enrichment_disease_v019=DOID:171;1.16e-07;10!DOID:169;9.71e-07;6 | |||
|ontology_enrichment_disease_v019_2=DOID:171,1.16e-07,10 | |||
|ontology_enrichment_uberon=UBERON:0000073!1.55e-56!94;UBERON:0001016!1.55e-56!94;UBERON:0001017!4.82e-55!82;UBERON:0005743!7.25e-55!86;UBERON:0001049!1.30e-47!57;UBERON:0005068!1.30e-47!57;UBERON:0006241!1.30e-47!57;UBERON:0007135!1.30e-47!57;UBERON:0000955!2.27e-42!69;UBERON:0006238!2.27e-42!69;UBERON:0002616!4.37e-41!59;UBERON:0002780!1.98e-40!41;UBERON:0001890!1.98e-40!41;UBERON:0006240!1.98e-40!41;UBERON:0003080!4.11e-39!42;UBERON:0002346!4.18e-37!90;UBERON:0000924!5.34e-37!173;UBERON:0006601!5.34e-37!173;UBERON:0003075!2.65e-35!86;UBERON:0007284!2.65e-35!86;UBERON:0004121!3.37e-35!169;UBERON:0001893!3.90e-33!34;UBERON:0002020!4.76e-33!34;UBERON:0003528!4.76e-33!34;UBERON:0002791!5.69e-32!33;UBERON:0001869!8.56e-32!32;UBERON:0003056!1.44e-30!61;UBERON:0002619!1.24e-26!22;UBERON:0000033!1.53e-25!123;UBERON:0007023!1.95e-25!115;UBERON:0001950!1.60e-24!20;UBERON:0000956!3.21e-24!25;UBERON:0000203!3.21e-24!25;UBERON:0000153!2.52e-23!129;UBERON:0007811!2.52e-23!129;UBERON:0002420!1.48e-10!9;UBERON:0007245!1.48e-10!9;UBERON:0010009!1.48e-10!9;UBERON:0010011!1.48e-10!9;UBERON:0000454!1.48e-10!9;UBERON:0001871!3.05e-10!7;UBERON:0002308!3.27e-10!9;UBERON:0000125!3.27e-10!9;UBERON:0003076!1.02e-09!15;UBERON:0003057!1.02e-09!15;UBERON:0000475!1.64e-09!365;UBERON:0001894!1.29e-08!7;UBERON:0006222!1.29e-08!7;UBERON:0009663!2.46e-08!7;UBERON:0000025!3.59e-08!194;UBERON:0000200!4.48e-08!6;UBERON:0000064!7.63e-08!219;UBERON:0004733!2.52e-07!12;UBERON:0002028!2.52e-07!12;UBERON:0007277!2.52e-07!12;UBERON:0000119!2.67e-07!312;UBERON:0000483!2.95e-07!309;UBERON:0002021!3.47e-07!5;UBERON:0000349!3.69e-07!5;UBERON:0001872!6.48e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;1.27e-47;32!UBERON:0002780;7.68e-47;41!UBERON:0001890;7.68e-47;41!UBERON:0002619;8.08e-46;22!UBERON:0001893;1.87e-45;34!UBERON:0003528;2.16e-45;34!UBERON:0002020;2.16e-45;34!UBERON:0002791;1.36e-44;32!UBERON:0000073;2.00e-42;53!UBERON:0002616;2.00e-42;53!UBERON:0001950;4.42e-42;20!UBERON:0000956;1.08e-39;25!UBERON:0000203;1.08e-39;25!UBERON:0000955;6.16e-32;68!UBERON:0001017;1.24e-31;75!UBERON:0001016;3.21e-28;83!UBERON:0001871;4.72e-15;6!UBERON:0002420;1.30e-14;9!UBERON:0007245;1.30e-14;9!UBERON:0010009;1.30e-14;9!UBERON:0010011;1.30e-14;9!UBERON:0000454;1.30e-14;9!UBERON:0000125;4.25e-14;9!UBERON:0002308;4.25e-14;9!UBERON:0001894;5.72e-14;7!UBERON:0000200;5.40e-13;6!UBERON:0004733;1.12e-12;12!UBERON:0002028;1.12e-12;12!UBERON:0002298;9.89e-12;6!UBERON:0004732;1.47e-11;13!UBERON:0002021;1.75e-11;5!UBERON:0000349;2.05e-11;5!UBERON:0001872;5.06e-11;5!UBERON:0009663;8.50e-11;7!UBERON:0011216;8.66e-11;132!UBERON:0007023;1.04e-10;114!UBERON:0000369;1.05e-09;4!UBERON:0002435;1.05e-09;4!UBERON:0000204;1.05e-09;4!UBERON:0002784;1.17e-08;4!UBERON:0003296;1.93e-08;4!UBERON:0010133;1.93e-08;4!UBERON:0002680;3.27e-08;9!UBERON:0001895;3.27e-08;9!UBERON:0005383;1.58e-07;3!UBERON:0005382;1.58e-07;3!UBERON:0001870;3.15e-07;3!UBERON:0000988;6.82e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.21e-88,81;UBERON:0001016,4.91e-87,89;UBERON:0001049,9.31e-79,56;UBERON:0005068,9.31e-79,56;UBERON:0006241,9.31e-79,56;UBERON:0007135,9.31e-79,56;UBERON:0000073,3.90e-77,53;UBERON:0002616,3.90e-77,53;UBERON:0000955,6.36e-71,68;UBERON:0006238,6.36e-71,68;UBERON:0002780,1.18e-65,41;UBERON:0001890,1.18e-65,41;UBERON:0003080,1.18e-65,41;UBERON:0006240,1.18e-65,41;UBERON:0002346,1.51e-55,86;UBERON:0003075,3.73e-54,82;UBERON:0007284,3.73e-54,82;UBERON:0001869,4.20e-53,32;UBERON:0001893,8.44e-53,34;UBERON:0003528,1.19e-52,34;UBERON:0002020,1.19e-52,34;UBERON:0002791,3.20e-49,32;UBERON:0002619,7.35e-46,22;UBERON:0003056,1.59e-45,61;UBERON:0004121,2.69e-45,171;UBERON:0000924,2.69e-45,171;UBERON:0006601,2.69e-45,171;UBERON:0010371,6.81e-44,104;UBERON:0001950,4.06e-42,20;UBERON:0000956,9.97e-40,25;UBERON:0000203,9.97e-40,25;UBERON:0011216,8.16e-33,223;UBERON:0007023,5.79e-32,114;UBERON:0010314,1.10e-29,132;UBERON:0000025,3.23e-16,192;UBERON:0001871,4.02e-15,6;UBERON:0002420,1.17e-14,9;UBERON:0007245,1.17e-14,9;UBERON:0010009,1.17e-14,9;UBERON:0010011,1.17e-14,9;UBERON:0000454,1.17e-14,9;UBERON:0003076,2.34e-14,15;UBERON:0003057,2.34e-14,15;UBERON:0000125,4.17e-14,9;UBERON:0002308,4.17e-14,9;UBERON:0001894,5.43e-14,7;UBERON:0006222,5.43e-14,7;UBERON:0000200,4.85e-13,6;UBERON:0004733,1.18e-12,12;UBERON:0002028,1.18e-12,12;UBERON:0007277,1.18e-12,12;UBERON:0002298,1.06e-11,6;UBERON:0004732,1.55e-11,13;UBERON:0002021,1.77e-11,5;UBERON:0000349,1.97e-11,5;UBERON:0001872,5.28e-11,5;UBERON:0009663,7.92e-11,7;UBERON:0004111,2.44e-10,240;UBERON:0000369,9.86e-10,4;UBERON:0002435,9.86e-10,4;UBERON:0000204,9.86e-10,4;UBERON:0010082,9.86e-10,4;UBERON:0002784,1.04e-08,4;UBERON:0003296,1.85e-08,4;UBERON:0010133,1.85e-08,4;UBERON:0002680,3.50e-08,9;UBERON:0001895,3.50e-08,9;UBERON:0010092,3.50e-08,9;UBERON:0000483,4.88e-08,306;UBERON:0000119,7.81e-08,309;UBERON:0005383,1.48e-07,3;UBERON:0005382,1.48e-07,3;UBERON:0001870,3.22e-07,3;UBERON:0000988,7.49e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50133791063589,0,0,0,0.0945348171640679,0,0,2.35762335895883,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0.275118041940067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151357427644931,0,0,0,0.570471821544449,0,0,0.161872944368132,0,0,0,0.103325781175765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.731842236777572,0.397589304964456,0.464775771478074,1.14027160516907,0.252320850875628,1.45990943630332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0,0.109750285408626,0,0.100528972411631,0.0925884451585296,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126995788584338,0,2.34434894420094,0,0,0.600686115687835,0.285826432630578,0,0,0.1466765716419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0,1.52456774533478,11.712586847186,10.8260433788877,14.908947614757,12.1208362814101,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,1.03473071292505,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280660094433074,0,0,0.160853921143607,0,0,0.177561725313127,0,0,0,0,0.200506470303285,0,0,0,0,0.451199612907412,0,0.784349769176855,0,0,0,0,0,0,0,0.501689773854853,0,0,0,0,0,0,0,0.325378394664303,0,0,0,0.574265537996172,0.650060246036521,0,0,0,0,0,0,0,0.0852266274161009,0.0890320356467374,0.330569830721956,0.192190067365106,0.510450849978337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.274537029736055,0,0.202182481573316,0,0.421258456238981,0,0,0,0,0,0,0,0,0,0,0.655894752046633,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,22.8653958986249,6.6114625712941,0,0,1.26675244876796,0,0.276283915531148,7.55798243562828,0,0,0,0,0,0,0.197286811273867,0,0,13.5706584453331,10.4827950922892,13.9729658600836,0,0,0,0,0,0,9.65281445076101,4.37406920074882,9.72299971626437,11.5146380155799,10.6124865990359,15.2581736317083,9.50981635408532,13.5951904718632,11.4080406520066,0,0.139423744278603,0,0,0,0,0.108647371922008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.68502832451693,0,18.5068912123018,0,0.19566461893209,0,0,2.41981432097328,20.2008022676123,0.189559738885464,0.751617097072463,0.103688191397247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176512253383001,4.51961481561065,0.411125773940253,0,13.4218887426463,0,0,0,0,0,0,26.0824396750186,0,0,0,0,0,0,0.288950589901519,4.20294202096853,1.64286454670392,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0.0824158583811665,0,0.0984274815147488,0,13.5189047267582,5.5843396505746,1.76828463311521,2.06309154895851,4.56984371832104,0,0,18.5286147806975,0,0.157611414598396,0.0524545881349981,0,0,0,0,0,0.25426853765475,0,0,0,0,0,0,0.226624183040251,0,0,5.04203529810047,4.23144325576608,0,0,0,0,0,0,0,0,0,0,0,0,0,0.314108192500469,10.6328181596038,13.7889679339218,6.50992839673799,2.29363678276028,2.66229723688445,8.94188202355922,6.36403720706662,0,0.303298235083296,0.856396000634902,0,17.3283915148546,31.3029421799382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.08795433572169,0,0,0,0.179088841081487,2.77921302444875,0.219284049578707,0,0.192914038270915,0,0.256241518587947,0,0,4.70078682915885,0,0,0,0,0,0,0,0,0,0,0,0,0,13.3010146155798,27.0640276605671,0.786329709279482,17.4735421107222,0.33946505990805,2.76347396132188,0,0.558644917973244,0,0,24.0171224485641,0,0,19.3972259791308,15.5866233958143,3.35231104020018,12.3069818544453,17.3929470392986,18.8799299227315,10.1729656748066,0,0,0,0,0,0,0,0,0,0.60511520611056,1.56302802246618,0,0.163771917510097,0,14.6556558621916,6.24862478891078,6.20060389503552,14.9027153955681,7.65764732625507,0,0,5.45200857514824,0,10.7140367175657,6.72567444437648,3.03482802118316,3.41493287026946,0,0,0,11.1470362082004,17.6928760884064,0,0,0.078493092850514,17.9111772504242,0,0.913158720509496,1.07963795609311,0,3.50235066465616,9.00677586876542,0,0.173858272302579,0,0,0,0,0.430227358820278,0,0,0,0,0,0,0,0,0.121917924982269,0,0,0,0.971421986118279,17.0775808327337,17.7066189893618,0.356760272332706,0,5.16720428703517,27.7771632162679,0.231522474323834,0.874238242015829,32.9222107453066,0,23.0963016159593,1.17785080268967,0.891139200981258,3.8039015482506,0,0.0939839179798536,0.0644578879735772,0,0,0,0,1.46067277649303,0.458729283404541,0.143339583151451,0.473314686579554,20.3294555670835,14.8359234715728,2.1161073620616,0,0,0,0.126166424835079,0.218531143927391,0.506794004045748,0.407955318967927,0,0.0918948995348449,0,0.0757786982182394,0,9.95003327350535,3.41328886344254,0,0,0,0,0,0,0,0.217716747896961,0,0,0,0.332660356546013,0,0,0,0,0,0.122241444182866,0,0,0,0 | |||
|short_description=p1@CHRNB2 | |||
}} |
Revision as of 21:10, 10 January 2014
Short description: | p1@CHRNB2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CHRNB2_5end |
Coexpression cluster: | C1405_smallcell_pineal_small_occipital_somatostatinoma_medial_amygdala |
Association with transcript: | 39bp_to_ENST00000368476, NM_000748, uc001ffg.2_5end |
EntrezGene: | CHRNB2 |
HGNC: | 1962 |
UniProt: | P17787Q5SXY3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 1.85e-15 | 8 |
neuron | 4.09e-12 | 6 |
neuroblast | 4.09e-12 | 6 |
electrically signaling cell | 4.09e-12 | 6 |
neural cell | 1.03e-08 | 25 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 1.16e-07 | 10 |