FFCP PHASE1:Hg19::chr12:31881948..31881965,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=196394 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=27281 | |||
|TSSclassifier=strong | |||
|UniProt=E9PHB0,B7Z7J3,F5GWF7,F5H7U5 | |||
|association_with_transcript=0bp_to_ENST00000457428,ENST00000536761,ENST00000537960,ENST00000541541,ENST00000542781_5end | |||
|description=CAGE_peak_1_at_AMN1_5end | |||
|id=chr12:31881948..31881965,- | |||
|ontology_enrichment_celltype=CL:0002057!5.94e-08!42;CL:0000236!3.97e-07!14;CL:0000860!4.10e-07!45;CL:0000738!4.40e-07!140;CL:0000945!4.59e-07!24;CL:0000826!4.59e-07!24 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.49e-09;33!CL:0002057;2.49e-09;33!CL:0000945;4.80e-07;24!CL:0000236;4.98e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,5.93e-08,42;CL:0002057,5.93e-08,42;CL:0000738,1.09e-07,136;CL:0002087,2.87e-07,115;CL:0000236,3.97e-07,14;CL:0000945,4.59e-07,24;CL:0000826,4.59e-07,24 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.22e-26!115;UBERON:0005743!1.53e-18!86;UBERON:0000073!6.92e-18!94;UBERON:0001016!6.92e-18!94;UBERON:0001017!1.48e-17!82;UBERON:0001049!1.60e-16!57;UBERON:0005068!1.60e-16!57;UBERON:0006241!1.60e-16!57;UBERON:0007135!1.60e-16!57;UBERON:0003080!5.95e-16!42;UBERON:0002780!8.69e-16!41;UBERON:0001890!8.69e-16!41;UBERON:0006240!8.69e-16!41;UBERON:0000955!4.41e-15!69;UBERON:0006238!4.41e-15!69;UBERON:0002616!4.75e-14!59;UBERON:0002346!3.10e-12!90;UBERON:0001893!5.64e-12!34;UBERON:0002020!5.72e-12!34;UBERON:0003528!5.72e-12!34;UBERON:0003075!6.23e-12!86;UBERON:0007284!6.23e-12!86;UBERON:0002791!1.61e-11!33;UBERON:0003056!3.16e-11!61;UBERON:0001869!5.07e-11!32;UBERON:0002619!2.29e-10!22;UBERON:0001950!1.25e-09!20;UBERON:0000956!7.81e-09!25;UBERON:0000203!7.81e-09!25;UBERON:0000153!6.23e-07!129;UBERON:0007811!6.23e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;1.19e-11;41!UBERON:0001890;1.19e-11;41!UBERON:0002619;1.96e-10;22!UBERON:0001893;2.62e-10;34!UBERON:0003528;3.99e-10;34!UBERON:0002020;3.99e-10;34!UBERON:0001869;5.36e-10;32!UBERON:0002791;5.37e-10;32!UBERON:0001950;1.08e-09;20!UBERON:0000073;1.30e-09;53!UBERON:0002616;1.30e-09;53!UBERON:0000956;7.35e-09;25!UBERON:0000203;7.35e-09;25!UBERON:0001017;1.55e-07;75!UBERON:0007023;1.86e-07;114!UBERON:0000955;6.47e-07;68 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,6.47e-26,114;UBERON:0001017,2.34e-17,81;UBERON:0001016,1.05e-16,89;UBERON:0001049,2.45e-16,56;UBERON:0005068,2.45e-16,56;UBERON:0006241,2.45e-16,56;UBERON:0007135,2.45e-16,56;UBERON:0002780,8.66e-16,41;UBERON:0001890,8.66e-16,41;UBERON:0003080,8.66e-16,41;UBERON:0006240,8.66e-16,41;UBERON:0000073,1.88e-15,53;UBERON:0002616,1.88e-15,53;UBERON:0000955,6.89e-15,68;UBERON:0006238,6.89e-15,68;UBERON:0001893,5.62e-12,34;UBERON:0003528,5.70e-12,34;UBERON:0002020,5.70e-12,34;UBERON:0002346,5.88e-12,86;UBERON:0003075,1.17e-11,82;UBERON:0007284,1.17e-11,82;UBERON:0003056,2.27e-11,61;UBERON:0002791,3.95e-11,32;UBERON:0001869,5.06e-11,32;UBERON:0002619,2.29e-10,22;UBERON:0001950,1.25e-09,20;UBERON:0000956,7.80e-09,25;UBERON:0000203,7.80e-09,25;UBERON:0011216,1.68e-07,223 | |||
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| |||
|short_description=p1@AMN1 | |||
}} |
Revision as of 12:53, 11 January 2014
Short description: | p1@AMN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_AMN1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000457428, ENST00000536761, ENST00000537960, ENST00000541541, ENST00000542781_5end |
EntrezGene: | AMN1 |
HGNC: | 27281 |
UniProt: | E9PHB0B7Z7J3F5GWF7F5H7U5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 5.93e-08 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.93e-08 | 42 |
leukocyte | 1.09e-07 | 136 |
nongranular leukocyte | 2.87e-07 | 115 |
B cell | 3.97e-07 | 14 |
lymphocyte of B lineage | 4.59e-07 | 24 |
pro-B cell | 4.59e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
adult organism | 6.47e-26 | 114 |
central nervous system | 2.34e-17 | 81 |
nervous system | 1.05e-16 | 89 |
neural tube | 2.45e-16 | 56 |
neural rod | 2.45e-16 | 56 |
future spinal cord | 2.45e-16 | 56 |
neural keel | 2.45e-16 | 56 |
regional part of forebrain | 8.66e-16 | 41 |
forebrain | 8.66e-16 | 41 |
anterior neural tube | 8.66e-16 | 41 |
future forebrain | 8.66e-16 | 41 |
regional part of nervous system | 1.88e-15 | 53 |
regional part of brain | 1.88e-15 | 53 |
brain | 6.89e-15 | 68 |
future brain | 6.89e-15 | 68 |
telencephalon | 5.62e-12 | 34 |
brain grey matter | 5.70e-12 | 34 |
gray matter | 5.70e-12 | 34 |
neurectoderm | 5.88e-12 | 86 |
neural plate | 1.17e-11 | 82 |
presumptive neural plate | 1.17e-11 | 82 |
pre-chordal neural plate | 2.27e-11 | 61 |
regional part of telencephalon | 3.95e-11 | 32 |
cerebral hemisphere | 5.06e-11 | 32 |
regional part of cerebral cortex | 2.29e-10 | 22 |
neocortex | 1.25e-09 | 20 |
cerebral cortex | 7.80e-09 | 25 |
pallium | 7.80e-09 | 25 |
organ system subdivision | 1.68e-07 | 223 |