FFCP PHASE1:Hg19::chr16:25160345..25160360,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=100506655 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_NR_039998,uc002dob.1_5end | |||
|coexpression_cluster_id=C34 | |||
|description=CAGE_peak_2_at_LOC100506655_5end | |||
|id=chr16:25160345..25160360,- | |||
|ontology_enrichment_celltype=CL:0000039!7.87e-40!7;CL:0000586!7.87e-40!7;CL:0000064!4.90e-11!3;CL:0005012!4.90e-11!3;CL:0000067!4.90e-11!3;CL:0002304!4.90e-11!3 | |||
|ontology_enrichment_celltype_v019=CL:0000039;6.72e-67;7!CL:0000586;6.72e-67;7!CL:0000650;8.32e-08;2!CL:1000500;8.32e-08;2!CL:1000618;8.32e-08;2!CL:1001318;8.32e-08;2!CL:0002173;8.32e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,5.66e-67,7;CL:0000586,5.66e-67,7;CL:0000650,9.19e-08,2;CL:1000500,9.19e-08,2;CL:1000618,9.19e-08,2;CL:1001318,9.19e-08,2;CL:0002173,9.19e-08,2 | |||
|ontology_enrichment_development_v019=UBERON:0003124;4.73e-15;1!UBERON:0009117;2.39e-12;10!UBERON:0005564;2.39e-12;10 | |||
|ontology_enrichment_disease=DOID:3095!1.50e-16!22;DOID:2994!1.50e-16!22;DOID:1799!2.04e-09!1;DOID:10165!2.04e-09!1;DOID:1798!2.04e-09!1;DOID:178!5.31e-09!1;DOID:326!5.31e-09!1;DOID:3978!5.31e-09!1;DOID:3394!5.31e-09!1;DOID:5844!5.31e-09!1 | |||
|ontology_enrichment_disease_v019=DOID:3095;3.17e-21;22!DOID:2994;3.17e-21;22!DOID:1799;7.13e-15;1!DOID:10165;7.13e-15;1!DOID:1798;7.13e-15;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,3.01e-21,22;DOID:2994,3.01e-21,22;DOID:1799,7.13e-15,1;DOID:10165,7.13e-15,1;DOID:1798,7.13e-15,1 | |||
|ontology_enrichment_uberon=UBERON:0001778!4.90e-11!3;UBERON:0001775!4.90e-11!3;UBERON:0000473!2.61e-09!8;UBERON:0006834!6.72e-09!1;UBERON:0000488!1.70e-08!4;UBERON:0002113!4.96e-07!27;UBERON:0003918!4.96e-07!27;UBERON:0005095!4.96e-07!27;UBERON:0007687!4.96e-07!27;UBERON:0003135!6.78e-07!11 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;2.82e-15;8!UBERON:0003135;2.80e-11;11!UBERON:0002113;4.39e-09;24!UBERON:0011143;4.39e-09;24!UBERON:0003567;8.32e-08;2!UBERON:0003838;8.32e-08;2!UBERON:0003586;8.32e-08;2!UBERON:0005169;8.32e-08;2!UBERON:0002321;8.32e-08;2!UBERON:0005215;8.32e-08;2!UBERON:0002303;8.32e-08;2!UBERON:0002319;8.32e-08;2!UBERON:0000489;1.49e-07;29!UBERON:0006554;2.62e-07;30!UBERON:0001008;2.62e-07;30 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,2.82e-15,8;UBERON:0003135,2.80e-11,11;UBERON:0002113,2.24e-08,26;UBERON:0003918,2.24e-08,26;UBERON:0011143,2.24e-08,26;UBERON:0005095,2.24e-08,26;UBERON:0007687,2.24e-08,26;UBERON:0003567,9.19e-08,2;UBERON:0003838,9.19e-08,2;UBERON:0003586,9.19e-08,2;UBERON:0005169,9.19e-08,2;UBERON:0002321,9.19e-08,2;UBERON:0005215,9.19e-08,2;UBERON:0002303,9.19e-08,2;UBERON:0002319,9.19e-08,2;UBERON:0000489,4.66e-07,31;UBERON:0006554,5.07e-07,47;UBERON:0001008,7.14e-07,48 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.378139268656271,0.221729397462564,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0.211103257785751,0,0,0,0,0,1.00337954770971,0,0,2.0148727924996,0,0,0,0,0,35.8582720534073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,30.9733104555603,0,0,0,0,0,0,0,0,0,0,0,0,4.27296284509893,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236387681767936,0,0,0,0,0,0,0,0,0,0,0,0,0,5.53353370531344,2.87224462111271,3.91130538919229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.599037001496973,0,0,0,0,1.16495949527454,0,0,0,0,0,0,0,0.160753148465019,0,0,0,0,0,0,0,3.14727528809989,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.64292091788694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,96.774285847439,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126698501011437,2.03977659483963,1.06886962106224,1.10273879441814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.244482888365733,0,0,0,0 | |||
|short_description=p2@LOC100506655 | |||
}} |
Revision as of 02:51, 12 January 2014
Short description: | p2@LOC100506655 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LOC100506655_5end |
Coexpression cluster: | C34_placenta_chorionic_choriocarcinoma_mesothelioma_Wilms_Smooth_bile |
Association with transcript: | 0bp_to_NR_039998, uc002dob.1_5end |
EntrezGene: | LOC100506655 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 5.66e-67 | 7 |
germ cell | 5.66e-67 | 7 |
mesangial cell | 9.19e-08 | 2 |
kidney interstitial cell | 9.19e-08 | 2 |
juxtaglomerular complex cell | 9.19e-08 | 2 |
renal interstitial pericyte | 9.19e-08 | 2 |
extraglomerular mesangial cell | 9.19e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
testis | 2.82e-15 | 8 |
male reproductive organ | 2.80e-11 | 11 |
kidney | 2.24e-08 | 26 |
kidney mesenchyme | 2.24e-08 | 26 |
upper urinary tract | 2.24e-08 | 26 |
kidney rudiment | 2.24e-08 | 26 |
kidney field | 2.24e-08 | 26 |
abdomen connective tissue | 9.19e-08 | 2 |
abdominal segment connective tissue | 9.19e-08 | 2 |
trunk connective tissue | 9.19e-08 | 2 |
interstitial tissue | 9.19e-08 | 2 |
extraglomerular mesangium | 9.19e-08 | 2 |
kidney interstitium | 9.19e-08 | 2 |
juxtaglomerular apparatus | 9.19e-08 | 2 |
mesangium | 9.19e-08 | 2 |
cavitated compound organ | 4.66e-07 | 31 |
urinary system structure | 5.07e-07 | 47 |
renal system | 7.14e-07 | 48 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 3.01e-21 | 22 |
germ cell cancer | 3.01e-21 | 22 |
islet cell tumor | 7.13e-15 | 1 |
endocrine pancreas cancer | 7.13e-15 | 1 |
pancreatic endocrine carcinoma | 7.13e-15 | 1 |