FFCP PHASE1:Hg19::chr3:49412915..49412932,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=not supported | |||
|DPIdataset=robust | |||
|EntrezGene=387 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=667 | |||
|TSSclassifier=strong | |||
|UniProt=P61586 | |||
|association_with_transcript=78bp_to_L09159_5end | |||
|description=CAGE_peak_3_at_RHOA_5end | |||
|id=chr3:49412915..49412932,- | |||
|ontology_enrichment_celltype=CL:0000860!4.03e-16!45;CL:0002057!8.84e-16!42;CL:0002194!2.24e-11!63;CL:0000576!2.24e-11!63;CL:0000040!2.24e-11!63;CL:0000559!2.24e-11!63;CL:0002009!6.90e-11!65;CL:0000557!1.13e-07!71;CL:0000766!1.21e-07!76;CL:0000839!1.31e-07!70 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.52e-15;33!CL:0002057;2.52e-15;33!CL:0000473;3.86e-13;39!CL:0000234;3.86e-13;39!CL:0000576;4.07e-08;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,2.01e-17,48;CL:0000234,2.01e-17,48;CL:0000860,1.03e-16,42;CL:0002057,1.03e-16,42;CL:0002194,7.81e-12,59;CL:0000576,7.81e-12,59;CL:0000040,7.81e-12,59;CL:0000559,7.81e-12,59;CL:0002009,4.30e-11,61;CL:0000839,3.46e-08,66;CL:0000766,3.47e-08,72;CL:0000557,4.24e-08,67 | |||
|ontology_enrichment_development_v019=CL:0002057;1.53e-12;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003081!2.68e-07!216;UBERON:0002371!3.37e-07!80 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000926,5.68e-09,315;UBERON:0004120,5.68e-09,315;UBERON:0006603,5.68e-09,315;UBERON:0003081,1.46e-07,203;UBERON:0002371,1.54e-07,76 | |||
|phase1_expression=2.54349730978779,12.417830385677,3.38290569830331,8.00586386825043,4.02264984984559,4.36169262050184,0,0.631719873426831,2.35067065379855,1.72013755551056,6.28021051175185,0.436882744260345,2.37390280405608,0.37129905888014,1.98838425436749,6.05092631806598,3.01347264011988,1.46062018077475,7.80692478064811,1.10808952269109,3.26401105990805,2.19418305034661,1.14494394852423,3.55873505189499,2.25976751270645,2.90370941842215,2.70931945184821,2.20390187678302,2.36018566109342,0.767658796194425,0.619264493264304,4.59710612239464,4.2168828628955,12.201882335504,0.619737604642413,0.568676929949686,0.293600439334847,0,6.21687787157439,3.25516306073778,0,0.971680998056939,1.03030227053675,7.99690313287606,6.04601509902095,2.91100873425379,10.6917356976615,9.04569353648017,7.12324653058738,6.61692502340946,5.89169625016932,3.54723344832878,6.20542225325913,4.51839278508678,5.41705946377367,10.1650863353007,7.36846605156184,5.8428105955722,12.549439587207,4.8139354061414,6.39337125799041,7.25672860410775,9.3747919082167,8.09827026012119,8.70627715885752,9.07816359505824,9.9651559839292,7.28621129244555,9.38669253156363,3.47502151528187,9.08099253950053,4.05105399586321,4.74693581161327,4.43636101255078,4.03948169933583,2.30624510059213,2.69588714751588,1.95229960693958,2.4108838004562,1.14005097496499,3.58050018958362,1.64397738388171,0,1.09227722252426,0,1.28019066769952,0.400395987036012,1.14950487990897,0.661044872784862,0,2.27685187643779,0.587237189370939,2.6759125968766,1.32171328579026,0.560508562981536,0,0.983548850569165,3.93010762749165,2.2616164889946,2.00623794468814,0.651844533267181,1.4203434172042,0,1.22551502573691,1.47302953737419,1.10766947291811,1.08321545506006,2.5618263945135,2.34106825607781,2.30213066445147,1.93445012450094,0.579606171470105,1.4828656316206,0.267540828089713,3.1360657141493,1.35971211237079,0,1.37450978193052,1.26509846009751,0.318565414324097,0.651083453856419,1.90090408889675,0.451725357233318,0.511946444617674,1.24930726552346,0.236777252044017,0.821127996921047,0.604820229674197,2.94184215361858,1.44824403882799,0,1.34140171940727,0.383587685530591,1.80719576192283,1.50401373190767,4.05570253090306,0,3.40644409211845,0.756278537312543,2.66075276955077,1.93236528524877,0.851363990735132,1.45718115317017,2.96627554227544,0.324547393654683,1.0447784237956,2.79211717089617,1.43094374583205,0,1.48583000531826,0.596287222100115,3.4409383804245,0.694281003215189,4.52246353539208,3.77549492588915,5.22724279686128,6.68783892917794,0.258416759169329,0,1.00416183829401,0.402829317109147,0,4.63717909341522,1.10298924103761,3.24056779152704,1.07159673940896,2.91888184414021,1.57656072676651,4.5994991239765,2.84779697870439,3.66403487860815,0,0,0.872188104285069,3.97577561356255,2.15271869829786,0.662045904066094,1.72101972449288,5.32002573297536,3.92474320099615,2.1349799145941,2.71334303258876,0,4.84958419450877,4.57693328717684,0.908144565869588,4.60940739583999,1.17160715916898,3.1216007683032,0.570471821544449,2.09228152772521,4.22764195117554,3.39933183173076,4.6348766211742,1.02077085627447,4.05353247128834,2.27316718586684,0,5.43987244412825,0,3.59309070908119,1.0100166837244,3.75355559615892,1.38532057742091,3.07284334616587,7.96868269077451,4.20666564938471,2.1552114800404,2.15267562826634,0.427114777637135,1.27159140695737,1.50045548042201,2.78241828943785,1.8034837803194,1.30281799432113,0.843881661206331,3.31285817548075,1.00973509697646,0.920498986422993,1.77810662500693,1.77504796258307,2.92181084860157,1.01736355386293,0.773043412653187,0.818238361772504,0.573609190778008,1.34171076742555,1.85541675650079,1.51052125730374,2.48786532036889,1.7662459561294,1.45990943630332,6.25798129319264,5.78916844373597,5.52539685409922,3.71494342425583,5.0531563716871,2.01121560067735,2.86593973132773,1.68707720918437,3.08823123650703,2.83243277320128,1.89816495288877,2.56179485504312,2.15843611637881,1.92373578473195,10.3341763647451,1.40241773803446,0.8231480226628,1.47008711385542,3.80265104465493,0,1.77236972004421,3.5317047953172,1.35287282397425,0.171567810298526,1.31700342490351,2.24803506515239,1.70899253099772,1.48141512253647,0,3.11980435583874,2.88662684050547,0.231860809950154,0.352226082707465,1.73239737313289,2.31492756288305,3.99533719692656,1.58040879591855,0,1.72351904261178,0.936017060556951,4.90482835552803,0,1.34385702559088,0.850650583454319,0.806026704325635,0.871901815541886,5.36735750831296,0,0.088048434013226,0.621984346622316,0.288239906833923,0.37872730027914,0.317489471460845,1.14596527667483,1.17217447210047,3.4214489204541,3.39330725920968,1.8020583470635,2.00078502841405,1.00917975910825,2.1798003441664,0.95339771567235,0.517086863031111,0,3.381211010224,0.797814349754612,1.04007436911366,0.771622122786426,4.25547396069835,2.1313774321288,1.57275793023962,1.08524321078289,1.64648067356154,0.977208552881205,0.710783897485092,0.791951872933429,0.602878754119172,1.74306691720059,2.29937879718731,6.08118903205952,3.51579964002488,14.7583757638122,1.4377491329495,5.7430967917057,0,3.04040744001916,6.78071864416265,0.716243852959582,1.45710687191585,0,3.45004119775228,1.54011643535698,1.27047312111232,0,6.18631050222156,0.502548796003046,1.27587750330633,6.74106321552464,29.9161459204025,1.65766205374414,1.2269149171914,2.00068208423871,1.08506009479894,2.9115920614313,9.27830741745241,2.83864347061082,2.45996971484698,0.601892199455438,15.9185252839189,4.1389228517002,1.99267679560631,4.60922921354258,1.30325421702124,0.391602314925481,5.14715135716284,0,4.74571241800957,2.02782359826544,1.21251028578504,0,3.0239029332968,2.23297027036899,0.767309866440312,12.3490441550552,2.05022638809122,1.53512174720011,3.37793234401576,1.48418066444991,5.08891989548763,2.13074070375753,0.739144404124282,6.23105315020345,5.22946703069817,1.69203229428271,4.81215528727884,1.01289087829486,1.26295892981067,4.37018803216121,3.8026080338233,2.70719767744447,1.23224539367064,1.56869953835371,2.92278449306521,1.37217117560738,5.68666920354483,5.10281115829547,3.23873874153209,4.62681758070868,0,4.01351819083883,0.764628819135115,4.15538004464362,3.80587083027703,0.219259876645935,0.261435451024901,0.256450125116389,0.656029291399411,0.325378394664303,0.618246069886334,3.75434805755208,0.660075999364704,0,8.45078319847478,1.6068392984416,0.676695028044854,4.00526404498075,3.22357716924872,3.30807773962873,1.18162269355101,3.48040065394148,2.30111894023472,0.623224249527161,0.495854746082934,3.45942121257191,0.127612712494584,0.910420027699949,6.04299214086472,1.25924938732256,0,1.54016790088044,0,0,1.66791797193528,8.01499365755151,0.744316738719335,1.58189712359363,2.2875623270859,0,0.855877976067841,2.22742273548156,10.20433232259,0.359744915166629,3.0199073270966,3.18093486333353,1.01091240786658,11.0957224821106,2.10629228119491,0,3.1682753652067,16.9040234810809,2.04749867111979,3.25232493493539,0,1.10273068709225,4.64407282668854,7.45366504931397,0,1.9676842561399,0.811641507850816,8.675057946793,8.169172473435,0.286822704408103,0.982490410131212,1.426684205925,2.48332744849418,2.11107635297664,7.90307743103764,0.379473173765715,0.349934720244983,0.48111056362756,4.69211592875051,7.62236894029258,0.470719003883896,0.86101074534246,1.68471475667626,3.99087138183008,0.459446800413919,2.02979043692868,0,5.69647187174163,0.952927101831156,1.23408681925858,0.648473311192717,2.16012574895246,6.34500141035416,1.70918513803957,0,0.735120647943095,0.371606350251437,0.432807638929335,0.213425530045242,1.11598390910176,3.39284931435788,1.1490322207942,2.11673582723883,2.27235358192189,3.36956613736151,0.912938716132769,2.50687833236837,0,2.03150133361924,2.40882112655549,3.02699560786571,2.12923118845163,3.09154810280188,1.22896305723383,0,0.500547425135725,2.54004524022652,0.835218521685727,1.23087398947712,1.6227340708559,1.99843180798692,0,0.748562161632879,2.4906390476222,0.970884173996107,0.66866030566487,1.42068073403207,0.95497793895076,0.890894042497916,2.15012491469462,0.994147647766298,1.40669416410513,0.222617410045812,0.824019371133798,0.844501632511974,3.58646378851925,3.03912307084262,1.0077309914171,0.613612095012929,0.246169610922139,4.3545542272653,0.269605053441981,0.358042349351218,0.511572370226872,2.17015492401254,4.7896618469388,2.22273980289274,1.93866549219044,0.834912883456661,0,1.04171104434093,0.349839999984783,4.34999745260876,0.682760689712998,0.254253650292766,0.945550727071745,0.689486746482929,1.45802306691627,2.08349993919951,2.65722415744152,2.77371808838438,0,1.10579259931225,2.06883333267483,1.97446857438575,0,0.278847488557207,0.692552326534174,0.455768223388005,0.46112780877612,0.269272933229316,0.977826347298073,2.23300811812344,0.824378340616761,6.92945208824225,9.19739683761629,0.784901281975124,0.997270091400938,1.1279783030859,0.392125068635479,2.01385904371011,0,0.317873157960757,3.58696709697646,0.489698424477443,0.565412285735763,0.216388639742091,1.99052386215701,0.973033209536731,1.22206028986725,0.889563386041866,0.247127877893006,0.939797545549098,0.876214728748802,0.802577647298789,3.51396668588009,5.47364367646998,0.19566461893209,0.971121518136371,1.97292201424695,1.20990716048664,1.53036380815245,1.13735843331278,0.150323419414493,0.933193722575224,1.32930774541437,2.97892760287949,1.56966459203613,0,0.853828638089378,0.832048038078832,6.07459084172958,0,0.261177619741208,3.84398670132466,1.54787429224455,4.06376591414158,2.19267951258557,2.79192553980911,2.03676934625681,0.441280633457501,2.93774963014692,1.50746117111426,1.58971689362392,0.379864775735272,0,1.04206466326994,1.06726497369676,3.39676336289621,0.72045208577053,0.114536596165916,2.23073497220554,0.720273989940749,0.372757606696298,1.64985824231757,0,0.418411385249333,0.509991088181609,0.866851769704557,1.20084057741958,1.36905378891993,0,5.15718529703949,0.525774708558629,3.6306712165393,1.60412296808179,0,4.5926170114768,6.00916467391199,0.669514372325618,0.671834724867263,1.08089965062721,0,1.81201319306614,2.30764403467266,1.95470277177136,0.196854963029498,1.01607998478941,0,2.72406812223151,1.92903778158023,2.75078873194468,5.40072439437941,0.899895566206002,1.5476039091159,0.121499113316049,0.670869375198532,1.41850273138557,0.209818352539992,0.211200673038813,2.86859742932552,0.191915197319445,4.2881719582402,2.64836788146173,1.27134268827375,3.80099721227599,15.5559868416228,8.81785872295405,3.59190574687462,0.738832686744051,1.87426823963964,1.35974509824151,0.879313402068495,2.65013777824443,1.16354660725395,2.90911723833918,0.855434189421647,2.81926008926669,1.06787412567695,0.314408610199332,2.89967338743037,5.45782623993146,0.790446527591777,0.487170393523584,0,0.544017803369474,1.5041393641362,0.612691153526923,1.63936315354902,0,0,2.92863035764712,1.502291168478,1.72022758707021,1.22021956690538,0.745156835296601,3.32036723846954,0.624902039810533,0.454947352624943,0.856396000634902,5.64637967275612,3.27834434064817,2.3187364577732,2.98509605773748,1.40227985908335,4.43844689202091,1.7046270474758,1.76097531226803,6.22867855117575,2.28840068396924,2.41969478021182,2.48699520932449,2.66139269981341,3.02663857611035,2.69881867298163,2.48420731002015,4.14706207840855,5.84851772027589,2.60872530905867,1.95334891696384,4.18885733385675,6.10306099806992,4.36436782086143,3.00749559718968,6.96050639817741,4.37905477568478,12.8008884692209,3.09056134664514,4.04099386519103,0,1.34833881285112,0.214441591374926,1.82696004375648,3.17388295717181,2.54674721756217,4.16052397660995,3.76086566271124,4.94082315457555,2.41212454536578,2.65033718918822,1.73622634443823,1.01365464391844,4.09986429740715,2.07258205038719,2.73473960559644,1.65910123382077,5.65094895634227,2.5244319659539,1.79921933681429,3.27609848846413,5.89854981008926,0.211312123358627,0.59996218756479,0.960225567247268,0.344429959321631,1.13503190713367,0.736423801007363,0,0,0,0.215649622793364,0.157265941855896,0.436838552768056,0.509197589862076,2.76347396132188,1.61116493536703,0,1.59002175326709,0.47317047000752,2.40171224485641,2.46873160583479,4.8999276376512,0.0642292250964595,0,2.39450788585727,3.07674546361133,2.01657356977374,0.414943514785307,2.90656162137332,2.85538840518309,0.392590874004102,0.471878893390961,4.76914356156365,1.73288499225507,1.52552838186867,0.690359926060101,0.397832444232549,0.676892955143315,0.80682027481408,0.781514011233092,1.83334686136996,8.02482395799474,0.591424344868181,0.472763092328763,1.56215619722769,1.65349437200947,0.253663240775627,1.09394961803644,3.83780436800028,2.97726707033577,0.879356221798103,1.14986184875636,0.535701835878287,0.672567444437648,1.82089681270989,0.682986574053893,0.620916591138472,1.95897778844825,1.02892805662451,0.543757863814654,0.328863867814245,0.709163045303809,0,0.627944742804112,2.19961825882403,0.560544326627578,0.913158720509496,0.647782773655864,0,1.1436247068265,0.632054446930906,1.04617282831313,0.521574816907738,0,2.07216164163037,2.7314956335032,1.38251932362818,1.29068207646083,0.236664001461131,0.681707238073262,3.38709640152743,3.43660302816075,2.79185747097888,1.91107787795487,0.559277158988962,0.294450700845729,0.365753774946808,0,1.12929087541872,3.4794432940146,5.82853191670967,1.40363678077263,2.58636007709779,2.37840181555137,0.5647304101948,1.75904826792687,0.603851374266694,0.231522474323834,4.15263164957519,4.23285566725371,3.43207650455468,0,2.1593931382644,1.18818560130834,3.8039015482506,1.52934403219035,0.563903507879121,0.322289439867886,0.599646935549574,0,0.705789743431384,0,1.46067277649303,4.12856355064087,2.15009374727177,0.631086248772738,0.611923411718232,3.05445483238264,3.1741610430924,10.0438654905023,6.00828317220844,9.08515780459957,1.7663299476911,0.874124575709564,1.14028650910293,1.73381010561369,0.801652215796681,1.37842349302267,4.76344324655513,0.757786982182394,3.48353369203032,3.31667775783512,1.86179392551411,5.75731751132648,2.85677317756488,0.710478008196067,0.248298857183432,1.12131862580613,0.954707374172474,1.81905470062397,5.87835219321796,3.08009970976753,0.404112318087525,0.78894425931944,3.32660356546013,0.325613074443898,0.426909383510862,0,0.179650404213174,2.34640942403454,0.977931553462932,5.69654649642034,3.99454064511308,3.8242020782295,1.28227396921293 | |||
|short_description=p3@RHOA | |||
}} |
Revision as of 18:55, 21 January 2014
Short description: | p3@RHOA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | No |
Description: | CAGE_peak_3_at_RHOA_5end |
Coexpression cluster: | NA |
Association with transcript: | 78bp_to_L09159_5end |
EntrezGene: | RHOA |
HGNC: | 667 |
UniProt: | P61586 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 2.01e-17 | 48 |
phagocyte | 2.01e-17 | 48 |
classical monocyte | 1.03e-16 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.03e-16 | 42 |
monopoietic cell | 7.81e-12 | 59 |
monocyte | 7.81e-12 | 59 |
monoblast | 7.81e-12 | 59 |
promonocyte | 7.81e-12 | 59 |
macrophage dendritic cell progenitor | 4.30e-11 | 61 |
myeloid lineage restricted progenitor cell | 3.46e-08 | 66 |
myeloid leukocyte | 3.47e-08 | 72 |
granulocyte monocyte progenitor cell | 4.24e-08 | 67 |
Ontology term | p-value | n |
---|---|---|
mesoderm | 5.68e-09 | 315 |
mesoderm-derived structure | 5.68e-09 | 315 |
presumptive mesoderm | 5.68e-09 | 315 |
lateral plate mesoderm | 1.46e-07 | 203 |
bone marrow | 1.54e-07 | 76 |