UBERON:0000062: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| (One intermediate revision by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment=note that CARO does not include a generic 'organ' class, only simple and compound organ | |comment=note that CARO does not include a generic 'organ' class, only simple and compound organ | ||
|created_by= | |created_by= | ||
| | |def="Anatomical structure that performs a specific function or group of functions [WP]. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions[GO]." [Wikipedia:Organ_(anatomy)] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0000062 | |||
|is_a=UBERON:0010000 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=organ | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0000467 | |part_of=UBERON:0000467 | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;RO:0002161 NCBITaxon:110815 | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;RO:0002161 NCBITaxon:110815 | ||
| | |subset= | ||
| | |synonym= | ||
|union_of= | |||
|xref=EFO:0000634;;FMA:67498;;MA:0003001;;ncithesaurus:Organ;;NIF_GrossAnatomy:birnlex_4;;OpenCyc:Mx4rv5XMb5wpEbGdrcN5Y29ycA;;OpenCyc:Mx4rwP3iWpwpEbGdrcN5Y29ycA | |||
}} | }} | ||
Latest revision as of 17:05, 12 September 2014
| Name: | organ | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Anatomical structure that performs a specific function or group of functions [WP]. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions[GO]." [Wikipedia:Organ_(anatomy)] | ||
| Xrefs: |
| ||
| Comments: | note that CARO does not include a generic 'organ' class, only simple and compound organ |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0010000(multicellular anatomical structure) |
|---|---|
| part_of: | UBERON:0000467(anatomical system) |
Children
| is a: | UBERON:0000020 (sense organ),UBERON:0000057 (urethra),UBERON:0000094 (membrane organ),UBERON:0000171 (respiration organ),UBERON:0000955 (brain),UBERON:0000997 (mammalian vulva),UBERON:0001630 (muscle organ),UBERON:0001849 (membranous labyrinth),UBERON:0001987 (placenta),UBERON:0002097 (skin of body),UBERON:0002530 (gland),UBERON:0003103 (compound organ),UBERON:0003133 (reproductive organ),UBERON:0004177 (hemopoietic organ),UBERON:0004765 (skeletal element),UBERON:0005057 (immune organ),UBERON:0005174 (dorsal region element),UBERON:0005177 (trunk region element),UBERON:0005906 (serous sac),UBERON:0007196 (tracheobronchial tree),UBERON:0013765 (digestive system element) |
|---|---|
| part of: | UBERON:0000064 (organ part),UBERON:0006876 (vasculature of organ) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10011-101C2 (bladder, adult, pool1)
- 10012-101C3 (brain, adult, pool1)
- 10013-101C4 (cervix, adult, pool1)
- 10014-101C5 (colon, adult, pool1)
- 10015-101C6 (esophagus, adult, pool1)
- 10016-101C7 (heart, adult, pool1)
- 10017-101C8 (kidney, adult, pool1)
- 10018-101C9 (liver, adult, pool1)
- 10019-101D1 (lung, adult, pool1)
- 10020-101D2 (ovary, adult, pool1)
... further results Mouse (Mus musculus)
- 10011-101C2 (bladder, adult, pool1)
- 10012-101C3 (brain, adult, pool1)
- 10013-101C4 (cervix, adult, pool1)
- 10014-101C5 (colon, adult, pool1)
- 10015-101C6 (esophagus, adult, pool1)
- 10016-101C7 (heart, adult, pool1)
- 10017-101C8 (kidney, adult, pool1)
- 10018-101C9 (liver, adult, pool1)
- 10019-101D1 (lung, adult, pool1)
- 10020-101D2 (ovary, adult, pool1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000062 (organ), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
No analysis results
