UBERON:0000062: Difference between revisions
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|located_in= | |located_in= | ||
|name=organ | |name=organ | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0000467 | |part_of=UBERON:0000467 | ||
Latest revision as of 17:05, 12 September 2014
| Name: | organ | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Anatomical structure that performs a specific function or group of functions [WP]. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions[GO]." [Wikipedia:Organ_(anatomy)] | ||
| Xrefs: |
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| Comments: | note that CARO does not include a generic 'organ' class, only simple and compound organ |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0010000(multicellular anatomical structure) |
|---|---|
| part_of: | UBERON:0000467(anatomical system) |
Children
| is a: | UBERON:0000020 (sense organ),UBERON:0000057 (urethra),UBERON:0000094 (membrane organ),UBERON:0000171 (respiration organ),UBERON:0000955 (brain),UBERON:0000997 (mammalian vulva),UBERON:0001630 (muscle organ),UBERON:0001849 (membranous labyrinth),UBERON:0001987 (placenta),UBERON:0002097 (skin of body),UBERON:0002530 (gland),UBERON:0003103 (compound organ),UBERON:0003133 (reproductive organ),UBERON:0004177 (hemopoietic organ),UBERON:0004765 (skeletal element),UBERON:0005057 (immune organ),UBERON:0005174 (dorsal region element),UBERON:0005177 (trunk region element),UBERON:0005906 (serous sac),UBERON:0007196 (tracheobronchial tree),UBERON:0013765 (digestive system element) |
|---|---|
| part of: | UBERON:0000064 (organ part),UBERON:0006876 (vasculature of organ) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10011-101C2 (bladder, adult, pool1)
- 10012-101C3 (brain, adult, pool1)
- 10013-101C4 (cervix, adult, pool1)
- 10014-101C5 (colon, adult, pool1)
- 10015-101C6 (esophagus, adult, pool1)
- 10016-101C7 (heart, adult, pool1)
- 10017-101C8 (kidney, adult, pool1)
- 10018-101C9 (liver, adult, pool1)
- 10019-101D1 (lung, adult, pool1)
- 10020-101D2 (ovary, adult, pool1)
... further results Mouse (Mus musculus)
- 10011-101C2 (bladder, adult, pool1)
- 10012-101C3 (brain, adult, pool1)
- 10013-101C4 (cervix, adult, pool1)
- 10014-101C5 (colon, adult, pool1)
- 10015-101C6 (esophagus, adult, pool1)
- 10016-101C7 (heart, adult, pool1)
- 10017-101C8 (kidney, adult, pool1)
- 10018-101C9 (liver, adult, pool1)
- 10019-101D1 (lung, adult, pool1)
- 10020-101D2 (ovary, adult, pool1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000062 (organ), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
No analysis results
