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{{UBERON
{{UBERON
|id=UBERON:0000075
|alt_id=UBERON:0010322
|name=subdivision of skeletal system
|comment=
|namespace=
|created_by=
|def=
|def="Anatomical cluster consisting of the skeletal elements and articular elements that are part of an individual subdivision of the organism." [UBERON:cjm, UBERONREF:0000003]
|xref=FMA:23879;;FMA:85544;;galen:ComplexSkeletalStructure;;ncithesaurus:Skeletal_System_Part;;SCTID:118966000
|is_a=UBERON:0000480;;UBERON:0004120
|synonym="skeletal system part" RELATED [];;"skeletal system subdivision" EXACT [FMA:85544];;"skeleton part" RELATED [];;"subdivision of skeleton" RELATED [];;"subdivision of skeleton (in vivo)" EXACT [FMA:23879]
|comment=note we consciously merge the two FMA classes below
|alt_id=
|disjoint_from=
|union_of=
|created_by=cjm
|obo_creation_date=2009-07-30T03:53:53Z
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0000075
|is_a=UBERON:0011216
|is_obsolete=
|located_in=
|located_in=
|name=subdivision of skeletal system
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001434
|part_of=UBERON:0001434
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="skeletal system part" RELATED [];;"skeletal system subdivision" EXACT [FMA:85544]
|union_of=
|xref=FMA:85544;;galen:ComplexSkeletalStructure;;ncithesaurus:Skeletal_System_Part;;SCTID:118966000
}}
}}

Latest revision as of 17:05, 12 September 2014

Name:subdivision of skeletal system
Namespace:FANTOM
Definition:"Anatomical cluster consisting of the skeletal elements and articular elements that are part of an individual subdivision of the organism." [UBERON:cjm, UBERONREF:0000003]
Xrefs:
links:

FMA:85544
galen:ComplexSkeletalStructure
ncithesaurus:Skeletal_System_Part

SCTID:118966000
Synonyms: "skeletal system part" RELATED []
"skeletal system subdivision" EXACT [FMA:85544]
Alt_id: UBERON:0010322

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0011216(organ system subdivision)
part_of:UBERON:0001434(skeletal system)



Children

is a:UBERON:0001130 (vertebral column),UBERON:0002517 (basicranium),UBERON:0003128 (cranium),UBERON:0003129 (skull),UBERON:0004761 (cartilaginous neurocranium),UBERON:0010323 (cranial skeletal system),UBERON:0011137 (axial skeletal system),UBERON:0011138 (post-cranial axial skeletal system),UBERON:0011158 (primary subdivision of skull),UBERON:0011159 (primary subdivision of cranial skeletal system),UBERON:0011249 (appendicular skeletal system)
part of:UBERON:0010912 (subdivision of skeleton)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000075 (subdivision of skeletal system), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

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