UBERON:0000075

Name:	subdivision of skeletal system
Namespace:	FANTOM
Definition:	"Anatomical cluster consisting of the skeletal elements and articular elements that are part of an individual subdivision of the organism." [UBERON:cjm, UBERONREF:0000003]
Xrefs:	Expandlinks: FMA:85544 galen:ComplexSkeletalStructure ncithesaurus:Skeletal_System_Part SCTID:118966000
Synonyms:	"skeletal system part" RELATED [] "skeletal system subdivision" EXACT [FMA:85544]
Alt_id:	UBERON:0010322

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

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Parents

is_a:	UBERON:0011216(organ system subdivision)
part_of:	UBERON:0001434(skeletal system)

Children

is a:

UBERON:0001130 (vertebral column),UBERON:0002517 (basicranium),UBERON:0003128 (cranium),UBERON:0003129 (skull),UBERON:0004761 (cartilaginous neurocranium),UBERON:0010323 (cranial skeletal system),UBERON:0011137 (axial skeletal system),UBERON:0011138 (post-cranial axial skeletal system),UBERON:0011158 (primary subdivision of skull),UBERON:0011159 (primary subdivision of cranial skeletal system),UBERON:0011249 (appendicular skeletal system)

part of:

UBERON:0010912 (subdivision of skeleton)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

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Human (Homo sapiens)

• 10195-103E6 (olfactory region, adult)
• 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)
• 11219-116B4 (Mesenchymal Stem Cells - Vertebral, donor1)
• 11223-116B8 (Fibroblast - Periodontal Ligament, donor4 (PL29))
• 11238-116D5 (Fibroblast - Periodontal Ligament, donor1)
• 11248-116E6 (Anulus Pulposus Cell, donor1)
• 11252-116F1 (Nucleus Pulposus Cell, donor1)
• 11304-117B8 (Fibroblast - Periodontal Ligament, donor5 (PL30))
• 11319-117D5 (Fibroblast - Periodontal Ligament, donor2)
• 11380-118B3 (Fibroblast - Periodontal Ligament, donor6 (PLH3))

... further results Mouse (Mus musculus)

• 10195-103E6 (olfactory region, adult)
• 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)
• 11219-116B4 (Mesenchymal Stem Cells - Vertebral, donor1)
• 11223-116B8 (Fibroblast - Periodontal Ligament, donor4 (PL29))
• 11238-116D5 (Fibroblast - Periodontal Ligament, donor1)
• 11248-116E6 (Anulus Pulposus Cell, donor1)
• 11252-116F1 (Nucleus Pulposus Cell, donor1)
• 11304-117B8 (Fibroblast - Periodontal Ligament, donor5 (PL30))
• 11319-117D5 (Fibroblast - Periodontal Ligament, donor2)
• 11380-118B3 (Fibroblast - Periodontal Ligament, donor6 (PLH3))

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000075 (subdivision of skeletal system), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

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Search:

P-value	FFCP	Short description

P-value	FFCP	Short description
1.88e-51	FFCP PHASE1:Hg19::chr3:174737010..174737023,+	p@chr3:174737010..174737023, +
1.88e-51	FFCP PHASE2:Hg19::chr3:174737010..174737023,+	p@chr3:174737010..174737023, +
2.62e-44	FFCP PHASE2:Hg19::chr20:21687193..21687206,+	p4@PAX1
2.62e-44	FFCP PHASE1:Hg19::chr20:21687193..21687206,+	p4@PAX1
5.38e-44	FFCP PHASE2:Mm9::chr1:24217213..24217226,+	p@chr1:24217213..24217226, +
5.38e-44	FFCP PHASE1:Mm9::chr1:24217213..24217226,+	p@chr1:24217213..24217226, +
7.83e-38	FFCP PHASE2:Hg19::chr22:23586671..23586679,+	p@chr22:23586671..23586679, +
7.83e-38	FFCP PHASE1:Hg19::chr22:23586671..23586679,+	p@chr22:23586671..23586679, +
1.02e-36	FFCP PHASE2:Hg19::chr14:37126870..37126882,+	p1@ENST00000555639
1.02e-36	FFCP PHASE1:Hg19::chr14:37126870..37126882,+	p1@ENST00000555639
2.1e-35	FFCP PHASE1:Hg19::chr14:37126765..37126799,+	p2@PAX9
2.1e-35	FFCP PHASE2:Hg19::chr14:37126765..37126799,+	p2@PAX9
7.98e-34	FFCP PHASE2:Hg19::chr1:75598362..75598407,-	p1@ENST00000427892, p1@uc001dgp.1
7.98e-34	FFCP PHASE1:Hg19::chr1:75598362..75598407,-	p1@ENST00000427892, p1@uc001dgp.1
9.47e-34	FFCP PHASE2:Hg19::chr14:37126814..37126834,+	p4@PAX9
9.47e-34	FFCP PHASE1:Hg19::chr14:37126814..37126834,+	p4@PAX9
2.03e-33	FFCP PHASE2:Mm9::chr15:78817557..78817567,+	p@chr15:78817557..78817567, +
2.03e-33	FFCP PHASE1:Mm9::chr15:78817557..78817567,+	p@chr15:78817557..78817567, +
3.37e-33	FFCP PHASE1:Mm9::chr11:77624716..77624729,+	p26@Myo18a
3.37e-33	FFCP PHASE2:Mm9::chr11:77624716..77624729,+	p26@Myo18a
4.33e-33	FFCP PHASE1:Mm9::chr9:21934585..21934591,-	p@chr9:21934585..21934591, -
4.33e-33	FFCP PHASE1:Mm9::chr8:75097542..75097549,+	p@chr8:75097542..75097549, +
4.33e-33	FFCP PHASE1:Mm9::chr2:32482372..32482381,+	p@chr2:32482372..32482381, +
4.33e-33	FFCP PHASE2:Mm9::chr8:75097542..75097549,+	p@chr8:75097542..75097549, +
4.33e-33	FFCP PHASE2:Mm9::chr9:21934585..21934591,-	p@chr9:21934585..21934591, -
4.33e-33	FFCP PHASE2:Mm9::chr2:32482372..32482381,+	p@chr2:32482372..32482381, +
1.06e-32	FFCP PHASE2:Hg19::chr14:37126852..37126863,+	p2@ENST00000555639
1.06e-32	FFCP PHASE1:Hg19::chr14:37126852..37126863,+	p2@ENST00000555639
9.32e-32	FFCP PHASE2:Hg19::chr1:75599683..75599699,-	p@chr1:75599683..75599699, -
9.32e-32	FFCP PHASE1:Hg19::chr1:75599683..75599699,-	p@chr1:75599683..75599699, -
2.86e-31	FFCP PHASE2:Hg19::chr5:30104176..30104187,-	p@chr5:30104176..30104187, -
2.86e-31	FFCP PHASE1:Hg19::chr5:30104176..30104187,-	p@chr5:30104176..30104187, -
3.24e-31	FFCP PHASE2:Hg19::chr1:75599672..75599682,-	p@chr1:75599672..75599682, -
3.24e-31	FFCP PHASE1:Hg19::chr1:75599672..75599682,-	p@chr1:75599672..75599682, -
6.66e-30	FFCP PHASE1:Mm9::chrX:154140800..154140810,+	p@chrX:154140800..154140810, +
6.66e-30	FFCP PHASE2:Mm9::chr5:72652660..72652667,+	p@chr5:72652660..72652667, +
6.66e-30	FFCP PHASE1:Mm9::chr9:42207697..42207705,-	p@chr9:42207697..42207705, -
6.66e-30	FFCP PHASE1:Mm9::chr8:13414266..13414279,+	p@chr8:13414266..13414279, +
6.66e-30	FFCP PHASE1:Mm9::chr17:13983179..13983190,+	p@chr17:13983179..13983190, +
6.66e-30	FFCP PHASE1:Mm9::chr8:94180607..94180619,-	p@chr8:94180607..94180619, -
6.66e-30	FFCP PHASE1:Mm9::chr12:109905468..109905474,+	p@chr12:109905468..109905474, +
6.66e-30	FFCP PHASE2:Mm9::chr9:92087926..92087938,+	p2@Plscr5
6.66e-30	FFCP PHASE2:Mm9::chr9:42207965..42207978,-	p5@Tecta
6.66e-30	FFCP PHASE2:Mm9::chr10:81091447..81091464,+	p9@Ankrd24
6.66e-30	FFCP PHASE2:Mm9::chr14:102297728..102297742,+	p@chr14:102297728..102297742, +
6.66e-30	FFCP PHASE1:Mm9::chr4:115556972..115556979,+	p3@Kncn
6.66e-30	FFCP PHASE1:Mm9::chr2:67011956..67011967,+	p1@Gm1322
6.66e-30	FFCP PHASE1:Mm9::chr18:38104702..38104718,-	p@chr18:38104702..38104718, -
6.66e-30	FFCP PHASE2:Mm9::chr5:30710455..30710464,-	p9@Otof
6.66e-30	FFCP PHASE2:Mm9::chr5:21371424..21371435,-	p2@Slc26a5
6.66e-30	FFCP PHASE1:Mm9::chr7:141605556..141605563,-	p@chr7:141605556..141605563, -
6.66e-30	FFCP PHASE2:Mm9::chr9:56208792..56208814,-	p@chr9:56208792..56208814, -
6.66e-30	FFCP PHASE2:Mm9::chr11:75421384..75421397,+	p@chr11:75421384..75421397, +
6.66e-30	FFCP PHASE1:Mm9::chr4:154208086..154208123,+	p@chr4:154208086..154208123, +
6.66e-30	FFCP PHASE1:Mm9::chr14:20649897..20649907,+	p@chr14:20649897..20649907, +
6.66e-30	FFCP PHASE2:Mm9::chr9:42206784..42206793,-	p@chr9:42206784..42206793, -
6.66e-30	FFCP PHASE2:Mm9::chr10:80806047..80806059,-	p4@Gipc3
6.66e-30	FFCP PHASE1:Mm9::chr3:154459231..154459240,+	p@chr3:154459231..154459240, +
6.66e-30	FFCP PHASE2:Mm9::chr18:42158627..42158630,-	p@chr18:42158627..42158630, -
6.66e-30	FFCP PHASE1:Mm9::chr11:4689837..4689845,-	p@chr11:4689837..4689845, -
6.66e-30	FFCP PHASE1:Mm9::chr5:68423014..68423037,+	p1@Grxcr1
6.66e-30	FFCP PHASE1:Mm9::chr1:172843885..172843890,-	p@chr1:172843885..172843890, -
6.66e-30	FFCP PHASE2:Mm9::chr1:93218694..93218705,+	p1@Espnl
6.66e-30	FFCP PHASE1:Mm9::chr2:170417150..170417155,-	p@chr2:170417150..170417155, -
6.66e-30	FFCP PHASE1:Mm9::chr17:31335903..31335921,-	p2@Tmprss3
6.66e-30	FFCP PHASE1:Mm9::chr15:97806034..97806061,+	p@chr15:97806034..97806061, +
6.66e-30	FFCP PHASE1:Mm9::chr3:81012915..81012923,+	p@chr3:81012915..81012923, +
6.66e-30	FFCP PHASE2:Mm9::chrX:154140781..154140788,+	p@chrX:154140781..154140788, +
6.66e-30	FFCP PHASE1:Mm9::chr5:144115382..144115389,+	p@chr5:144115382..144115389, +
6.66e-30	FFCP PHASE1:Mm9::chr15:12848147..12848162,+	p@chr15:12848147..12848162, +
6.66e-30	FFCP PHASE2:Mm9::chr13:78257454..78257465,+	p@chr13:78257454..78257465, +
6.66e-30	FFCP PHASE2:Mm9::chr1:63733478..63733491,-	p1@Dytn
6.66e-30	FFCP PHASE2:Mm9::chr1:172843796..172843799,-	p@chr1:172843796..172843799, -
6.66e-30	FFCP PHASE1:Mm9::chr9:42207887..42207960,-	p1@Tecta
6.66e-30	FFCP PHASE2:Mm9::chr1:43454162..43454170,-	p@chr1:43454162..43454170, -
6.66e-30	FFCP PHASE2:Mm9::chr6:29428397..29428407,-	p@chr6:29428397..29428407, -
6.66e-30	FFCP PHASE1:Mm9::chr3:100724698..100724706,+	p@chr3:100724698..100724706, +
6.66e-30	FFCP PHASE1:Mm9::chr10:81091447..81091464,+	p9@Ankrd24
6.66e-30	FFCP PHASE2:Mm9::chr18:66033526..66033539,-	p@chr18:66033526..66033539, -
6.66e-30	FFCP PHASE2:Mm9::chr18:59222033..59222043,+	p7@A730017C20Rik
6.66e-30	FFCP PHASE2:Mm9::chr4:101908153..101908163,+	p@chr4:101908153..101908163, +
6.66e-30	FFCP PHASE2:Mm9::chr5:144115382..144115389,+	p@chr5:144115382..144115389, +
6.66e-30	FFCP PHASE2:Mm9::chr10:107349378..107349390,-	p1@Otogl
6.66e-30	FFCP PHASE1:Mm9::chr19:4140290..4140321,+	p2@Gpr152
6.66e-30	FFCP PHASE1:Mm9::chr12:13572961..13572974,+	p@chr12:13572961..13572974, +
6.66e-30	FFCP PHASE2:Mm9::chr17:13983160..13983167,+	p@chr17:13983160..13983167, +
6.66e-30	FFCP PHASE2:Mm9::chr3:154459231..154459240,+	p@chr3:154459231..154459240, +
6.66e-30	FFCP PHASE2:Mm9::chr2:121206677..121206683,-	p3@Strc
6.66e-30	FFCP PHASE1:Mm9::chr10:107349378..107349390,-	p1@Otogl
6.66e-30	FFCP PHASE2:Mm9::chr5:68423014..68423037,+	p1@Grxcr1
6.66e-30	FFCP PHASE2:Mm9::chr16:96494788..96494801,+	p12@B3galt5
6.66e-30	FFCP PHASE1:Mm9::chr10:67371994..67372010,+	p@chr10:67371994..67372010, +
6.66e-30	FFCP PHASE2:Mm9::chr19:22767090..22767099,+	p18@Trpm3
6.66e-30	FFCP PHASE1:Mm9::chr6:113251614..113251623,+	p@chr6:113251614..113251623, +
6.66e-30	FFCP PHASE2:Mm9::chr9:42207792..42207805,-	p11@Tecta
6.66e-30	FFCP PHASE2:Mm9::chr7:27964761..27964768,+	p@chr7:27964761..27964768, +
6.66e-30	FFCP PHASE1:Mm9::chr3:35012425..35012439,+	p@chr3:35012425..35012439, +
6.66e-30	FFCP PHASE1:Mm9::chr2:29935952..29935993,+	p7@Pkn3
6.66e-30	FFCP PHASE1:Mm9::chr1:60561636..60561645,-	p@chr1:60561636..60561645, -
6.66e-30	FFCP PHASE1:Mm9::chr19:55255206..55255223,+	p1@Tectb

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