Personal tools

UBERON:0002185: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
Line 14: Line 14:
|located_in=
|located_in=
|name=bronchus
|name=bronchus
|namespace=
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=UBERON:0007196
|part_of=UBERON:0007196

Latest revision as of 17:27, 12 September 2014

Name:bronchus
Namespace:FANTOM
Definition:"A portion of the airway that connects to the lungs[GO]." [Wikipedia:Bronchus]
Xrefs:
links:

BTO:0001340
EFO:0000932
EV:0100041
FMA:7409
GAID:346
[1]
[ 200px-Respiratory_system_complete_numbered.svg.png 200px-Respiratory_system_complete_numbered.svg.png]
MA:0000436
MAT:0000133
MESH:A.04.411.125
MIAA:0000133
ncithesaurus:Bronchus
SCTID:181215002
VHOG:0000262

XAO:0000121
Synonyms: "bronchi" EXACT PLURAL []
"bronchial tissue" RELATED [BTO:0001340]
"bronchial trunk" EXACT []
Alt_id: UBERON:FMA_7409-MA_0000436-MIAA_0000133-XAO_0000121
Subset: organ_slim
uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0000117(respiratory tube)
part_of:UBERON:0007196(tracheobronchial tree)



Children

part of:UBERON:0002031 (epithelium of bronchus),CL:0002328 (bronchial epithelial cell),CL:0002598 (bronchial smooth muscle cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002185 (bronchus), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data