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UBERON:0003672: Difference between revisions

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|located_in=
|located_in=
|name=dentition
|name=dentition
|namespace=
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=UBERON:0010323
|part_of=UBERON:0010323

Latest revision as of 17:41, 12 September 2014

Name:dentition
Namespace:FANTOM
Xrefs:
links:

AAO:0000126
FMA:75150
GAID:1249
MESH:A.14.254
ncithesaurus:Dentition
OpenCyc:Mx4rvVi65JwpEbGdrcN5Y29ycA

SCTID:245543004
Synonyms: "dentes" EXACT [FMA:75150, FMA:TA]
"set of teeth" EXACT [FMA:75150]
"teeth" EXACT [FMA:75150]
"teeth" RELATED []
"teeth set" EXACT [FMA:75150]
Comments:In FMA this is an anatomical set

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0000477(anatomical cluster),UBERON:0010314(structure with developmental contribution from neural crest)
part_of:UBERON:0010323(cranial skeletal system)



Children

part of:UBERON:0001758 (periodontium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

  • 11223-116B8 (Fibroblast - Periodontal Ligament, donor4 (PL29))
  • 11238-116D5 (Fibroblast - Periodontal Ligament, donor1)
  • 11304-117B8 (Fibroblast - Periodontal Ligament, donor5 (PL30))
  • 11319-117D5 (Fibroblast - Periodontal Ligament, donor2)
  • 11380-118B3 (Fibroblast - Periodontal Ligament, donor6 (PLH3))
  • 11395-118C9 (Fibroblast - Periodontal Ligament, donor3)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003672 (dentition), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data











Property "Property value" (as page type) with input value "UBPROP:0000001 "Dentition refers to set of teeth, especially with regard to their number, kind, and arrangement, in the mouth.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.