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{{UBERON
{{UBERON
|id=UBERON:0010532
|alt_id=
|name=primitive nephron
|namespace=
|def=
|xref=
|is_a=UBERON:0001285;;UBERON:0003914;;UBERON:0004819;;UBERON:0006555
|synonym="developing nephron" BROAD [];;"primitive nephron" BROAD []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=UBERON:0004209
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0010532
|is_a=UBERON:0003914 ;;UBERON:0004819 ;;UBERON:0006555 ;;UBERON:0007497
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=primitive nephron
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0002113
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="developing nephron" BROAD [];;"primitive nephron" BROAD []
|union_of=
|xref=
}}
}}

Latest revision as of 18:09, 12 September 2014

Name:primitive nephron
Namespace:FANTOM
Synonyms: "developing nephron" BROAD []
"primitive nephron" BROAD []

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0003914(epithelial tube),UBERON:0004819(kidney epithelium),UBERON:0006555(excretory tube),UBERON:0007497(developing epithelial placode)
develops_from:UBERON:0004209(renal vesicle)
part_of:UBERON:0002113(kidney)



Children

is a:UBERON:0004198 (comma-shaped body),UBERON:0004199 (S-shaped body)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0010532 (primitive nephron), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
6.87e-64FFCP PHASE2:Hg19::chr2:120409486..120409492,+#_377d69737d5585a09a0e8eb7d72c31dap@chr2:120409486..120409492, +
6.87e-64FFCP PHASE1:Hg19::chr2:120409486..120409492,+#_377d69737d5585a09a0e8eb7d72c31dap@chr2:120409486..120409492, +
9.62e-40FFCP PHASE1:Hg19::chr1:94713418..94713436,+#_5c2bdc82a7f6f1d06735e9d6f1a279b8p1@ENST00000413103
9.62e-40FFCP PHASE2:Hg19::chr1:94713418..94713436,+#_5c2bdc82a7f6f1d06735e9d6f1a279b8p1@ENST00000413103
1.16e-36FFCP PHASE2:Hg19::chr17:79426453..79426462,+#_790109663b0e3c0ba86ed2ea1904b32bp@chr17:79426453..79426462, +
1.16e-36FFCP PHASE1:Hg19::chr17:79426453..79426462,+#_790109663b0e3c0ba86ed2ea1904b32bp@chr17:79426453..79426462, +
1.31e-36FFCP PHASE1:Hg19::chr8:77557753..77557755,-#_123d29227f17e25d17c80344f878f63cp@chr8:77557753..77557755, -
1.31e-36FFCP PHASE2:Hg19::chr8:77557753..77557755,-#_123d29227f17e25d17c80344f878f63cp@chr8:77557753..77557755, -
5.58e-32FFCP PHASE2:Hg19::chr1:32042764..32042776,+#_4b52cb1d6a73fd272c70983686b00971p6@TINAGL1
5.58e-32FFCP PHASE1:Hg19::chr1:32042764..32042776,+#_4b52cb1d6a73fd272c70983686b00971p6@TINAGL1
1.53e-30FFCP PHASE1:Hg19::chr15:91416076..91416089,+#_2acd2197ab57f8b24a0763955bcb4702p9@FURIN
1.53e-30FFCP PHASE2:Hg19::chr15:91416076..91416089,+#_2acd2197ab57f8b24a0763955bcb4702p9@FURIN
3.83e-30FFCP PHASE1:Hg19::chr20:6034598..6034603,-#_0e1ceeb620dc34bec844e653926b15e5p7@LRRN4
3.83e-30FFCP PHASE2:Hg19::chr20:6034598..6034603,-#_0e1ceeb620dc34bec844e653926b15e5p7@LRRN4
1.78e-29FFCP PHASE2:Hg19::chr1:42777312..42777314,+#_db06bad19f2f7a3e88399b2c4e57c752p@chr1:42777312..42777314, +
1.78e-29FFCP PHASE1:Hg19::chr22:47030082..47030087,+#_db06bad19f2f7a3e88399b2c4e57c752p@chr22:47030082..47030087, +
1.78e-29FFCP PHASE2:Hg19::chr2:26700984..26700993,-#_db06bad19f2f7a3e88399b2c4e57c752p7@OTOF
1.78e-29FFCP PHASE2:Hg19::chr6:18225523..18225534,-#_db06bad19f2f7a3e88399b2c4e57c752p@chr6:18225523..18225534, -
1.78e-29FFCP PHASE2:Hg19::chr2:26700331..26700340,-#_db06bad19f2f7a3e88399b2c4e57c752p@chr2:26700331..26700340, -
1.78e-29FFCP PHASE1:Hg19::chr1:42777312..42777314,+#_db06bad19f2f7a3e88399b2c4e57c752p@chr1:42777312..42777314, +
1.78e-29FFCP PHASE1:Hg19::chr2:26700984..26700993,-#_db06bad19f2f7a3e88399b2c4e57c752p7@OTOF
1.78e-29FFCP PHASE1:Hg19::chr6:18225523..18225534,-#_db06bad19f2f7a3e88399b2c4e57c752p@chr6:18225523..18225534, -
1.78e-29FFCP PHASE2:Hg19::chr22:47030082..47030087,+#_db06bad19f2f7a3e88399b2c4e57c752p@chr22:47030082..47030087, +
1.78e-29FFCP PHASE1:Hg19::chr2:26700331..26700340,-#_db06bad19f2f7a3e88399b2c4e57c752p@chr2:26700331..26700340, -
7.96e-27FFCP PHASE2:Hg19::chr10:3477893..3477912,-#_025d2c07e8b0277d6e7b150b2809381dp@chr10:3477893..3477912, -
7.96e-27FFCP PHASE1:Hg19::chr10:3477893..3477912,-#_025d2c07e8b0277d6e7b150b2809381dp@chr10:3477893..3477912, -
6.29e-26FFCP PHASE1:Hg19::chr1:172926077..172926120,-#_2836667f555f7220b22dfcfd9cb90c8cp@chr1:172926077..172926120, -
6.29e-26FFCP PHASE2:Hg19::chr1:172926077..172926120,-#_2836667f555f7220b22dfcfd9cb90c8cp@chr1:172926077..172926120, -
6.32e-26FFCP PHASE1:Hg19::chrX:128782722..128782738,-#_cedfe584c3fc3b4be23b9f5b8a578a2dp5@APLN
6.32e-26FFCP PHASE2:Hg19::chrX:128782722..128782738,-#_cedfe584c3fc3b4be23b9f5b8a578a2dp5@APLN
9.89e-26FFCP PHASE1:Hg19::chr2:693380..693398,+#_51b579c510ff8c5aa074caddbd8046f7p@chr2:693380..693398, +
9.89e-26FFCP PHASE2:Hg19::chr2:693380..693398,+#_51b579c510ff8c5aa074caddbd8046f7p@chr2:693380..693398, +
1.28e-23FFCP PHASE1:Hg19::chr2:133426030..133426041,-#_8013f769dbad6afead745de1a63760acp@chr2:133426030..133426041, -
1.28e-23FFCP PHASE2:Hg19::chr6:84849252..84849259,+#_8013f769dbad6afead745de1a63760acp@chr6:84849252..84849259, +
1.28e-23FFCP PHASE2:Hg19::chr2:133426030..133426041,-#_8013f769dbad6afead745de1a63760acp@chr2:133426030..133426041, -
1.28e-23FFCP PHASE1:Hg19::chr6:84849252..84849259,+#_8013f769dbad6afead745de1a63760acp@chr6:84849252..84849259, +
1.44e-23FFCP PHASE2:Hg19::chr1:51791596..51791607,-#_825d704d72c8013a4b1c0466ae333c54p23@TTC39A
1.44e-23FFCP PHASE2:Hg19::chr7:28998254..28998261,-#_825d704d72c8013a4b1c0466ae333c54p10@TRIL
1.44e-23FFCP PHASE1:Hg19::chr1:51791596..51791607,-#_825d704d72c8013a4b1c0466ae333c54p23@TTC39A
1.44e-23FFCP PHASE1:Hg19::chr7:28998254..28998261,-#_825d704d72c8013a4b1c0466ae333c54p10@TRIL
1.61e-23FFCP PHASE2:Hg19::chr15:85403302..85403304,+#_bbe5341046866b74bf1575ba6afbc23fp@chr15:85403302..85403304, +
1.61e-23FFCP PHASE1:Hg19::chr7:4051097..4051112,+#_bbe5341046866b74bf1575ba6afbc23fp@chr7:4051097..4051112, +
1.61e-23FFCP PHASE1:Hg19::chr15:85403302..85403304,+#_bbe5341046866b74bf1575ba6afbc23fp@chr15:85403302..85403304, +
1.61e-23FFCP PHASE2:Hg19::chr7:4051097..4051112,+#_bbe5341046866b74bf1575ba6afbc23fp@chr7:4051097..4051112, +
1.8e-23FFCP PHASE2:Hg19::chr16:2141529..2141537,+#_e152b8f24d18c194390abc7825505f70p@chr16:2141529..2141537, +
1.8e-23FFCP PHASE1:Hg19::chr16:2141529..2141537,+#_e152b8f24d18c194390abc7825505f70p@chr16:2141529..2141537, +
2.92e-22FFCP PHASE2:Hg19::chr5:74244100..74244117,+#_afb5b7044de3556475e8a0c37ee794c4p@chr5:74244100..74244117, +
2.92e-22FFCP PHASE1:Hg19::chr5:74244100..74244117,+#_afb5b7044de3556475e8a0c37ee794c4p@chr5:74244100..74244117, +
5.69e-22FFCP PHASE2:Hg19::chr5:148651758..148651769,-#_3e0bff10c681dda0b51203d6cbaa8446p@chr5:148651758..148651769, -
5.69e-22FFCP PHASE1:Hg19::chr5:148651758..148651769,-#_3e0bff10c681dda0b51203d6cbaa8446p@chr5:148651758..148651769, -
2.9e-21FFCP PHASE2:Hg19::chr16:86768403..86768437,+#_3410fdb2939d43cb9e84a75d0a6f6d0bp@chr16:86768403..86768437, +
2.9e-21FFCP PHASE1:Hg19::chr16:86768403..86768437,+#_3410fdb2939d43cb9e84a75d0a6f6d0bp@chr16:86768403..86768437, +
4.78e-21FFCP PHASE2:Hg19::chr17:2076002..2076026,-#_677c1fde1e83612cac874b1922f85ce9p@chr17:2076002..2076026, -
4.78e-21FFCP PHASE1:Hg19::chr17:2076002..2076026,-#_677c1fde1e83612cac874b1922f85ce9p@chr17:2076002..2076026, -
1.26e-20FFCP PHASE2:Hg19::chr1:32712897..32712909,+#_55077ee4ec6e49b255abfdd59e8ecf12p3@FAM167B
1.26e-20FFCP PHASE1:Hg19::chr1:32712897..32712909,+#_55077ee4ec6e49b255abfdd59e8ecf12p3@FAM167B
2.32e-20FFCP PHASE1:Hg19::chr11:124628392..124628427,-#_de868b3747c69ad668c501268df8b705p@chr11:124628392..124628427, -
2.32e-20FFCP PHASE2:Hg19::chr11:124628392..124628427,-#_de868b3747c69ad668c501268df8b705p@chr11:124628392..124628427, -
3.42e-20FFCP PHASE1:Hg19::chr3:98591021..98591026,-#_ff0362b52751bedb7891302505869bf4p1@ENST00000487339
3.42e-20FFCP PHASE2:Hg19::chr3:98591021..98591026,-#_ff0362b52751bedb7891302505869bf4p1@ENST00000487339
3.44e-20FFCP PHASE2:Hg19::chr19:47231340..47231383,-#_7a6e647fe95bcd9366ff9e0778eb3d4cp@chr19:47231340..47231383, -
3.44e-20FFCP PHASE1:Hg19::chr19:47231340..47231383,-#_7a6e647fe95bcd9366ff9e0778eb3d4cp@chr19:47231340..47231383, -
3.58e-20FFCP PHASE2:Hg19::chr19:1826957..1826984,-#_902cc13b8cc8612e74a3d6eeeda82309p@chr19:1826957..1826984, -
3.58e-20FFCP PHASE1:Hg19::chr19:1826957..1826984,-#_902cc13b8cc8612e74a3d6eeeda82309p@chr19:1826957..1826984, -
4.39e-20FFCP PHASE2:Hg19::chr4:38057595..38057624,-#_481a87cc481a48225981242c64ad4316p@chr4:38057595..38057624, -
4.39e-20FFCP PHASE1:Hg19::chr4:38057595..38057624,-#_481a87cc481a48225981242c64ad4316p@chr4:38057595..38057624, -
7.13e-20FFCP PHASE1:Hg19::chr2:133426106..133426117,-#_54af4e3931d139b93305c0e0f58426bfp@chr2:133426106..133426117, -
7.13e-20FFCP PHASE2:Hg19::chr2:133426106..133426117,-#_54af4e3931d139b93305c0e0f58426bfp@chr2:133426106..133426117, -
7.84e-20FFCP PHASE2:Hg19::chr9:35753821..35753835,-#_e3845e8f7740c0ef08b40e7b2f6579b0p@chr9:35753821..35753835, -
7.84e-20FFCP PHASE1:Hg19::chr15:36653709..36653720,-#_e3845e8f7740c0ef08b40e7b2f6579b0p@chr15:36653709..36653720, -
7.84e-20FFCP PHASE2:Hg19::chr15:36653709..36653720,-#_e3845e8f7740c0ef08b40e7b2f6579b0p@chr15:36653709..36653720, -
7.84e-20FFCP PHASE1:Hg19::chr9:35753821..35753835,-#_e3845e8f7740c0ef08b40e7b2f6579b0p@chr9:35753821..35753835, -
8.62e-20FFCP PHASE2:Hg19::chr4:145568170..145568180,-#_9f46560ed00ec074691003d6539b626dp@chr4:145568170..145568180, -
8.62e-20FFCP PHASE1:Hg19::chr4:145568170..145568180,-#_9f46560ed00ec074691003d6539b626dp@chr4:145568170..145568180, -
1.04e-19FFCP PHASE1:Hg19::chr19:38397228..38397266,-#_b98c3a3d607518fbd57ff88e55434041p1@WDR87
1.04e-19FFCP PHASE2:Hg19::chr19:38397228..38397266,-#_b98c3a3d607518fbd57ff88e55434041p1@WDR87
1.15e-19FFCP PHASE2:Hg19::chr14:91270270..91270281,-#_088ccf9aa16b7c45bd131aad148e5cbdp@chr14:91270270..91270281, -
1.15e-19FFCP PHASE1:Hg19::chr14:91270270..91270281,-#_088ccf9aa16b7c45bd131aad148e5cbdp@chr14:91270270..91270281, -
2.44e-19FFCP PHASE1:Hg19::chr12:52306196..52306215,+#_64f2c31eb2b072db1f1bcdbcfc280949p6@ACVRL1
2.44e-19FFCP PHASE2:Hg19::chr12:52306196..52306215,+#_64f2c31eb2b072db1f1bcdbcfc280949p6@ACVRL1
3.27e-19FFCP PHASE1:Hg19::chr3:43538305..43538325,-#_5c033260e364faa073e2c2f96522cedap@chr3:43538305..43538325, -
3.27e-19FFCP PHASE2:Hg19::chr3:43538305..43538325,-#_5c033260e364faa073e2c2f96522cedap@chr3:43538305..43538325, -
4.64e-19FFCP PHASE2:Hg19::chr17:171147..171161,+#_910081fb64daf4aa4853d46d25af8b2bp@chr17:171147..171161, +
4.64e-19FFCP PHASE1:Hg19::chr17:171147..171161,+#_910081fb64daf4aa4853d46d25af8b2bp@chr17:171147..171161, +
5.39e-19FFCP PHASE2:Hg19::chr1:22211913..22211920,+#_3393c0ad3d2594074462210c228bad95p@chr1:22211913..22211920, +
5.39e-19FFCP PHASE1:Hg19::chr1:22211913..22211920,+#_3393c0ad3d2594074462210c228bad95p@chr1:22211913..22211920, +
1.99e-18FFCP PHASE2:Hg19::chr7:27219833..27219845,-#_b319e5086a1d826591a0f38f2ffa8a9cp7@HOXA10
1.99e-18FFCP PHASE1:Hg19::chr7:27219833..27219845,-#_b319e5086a1d826591a0f38f2ffa8a9cp7@HOXA10
2.69e-18FFCP PHASE1:Hg19::chr1:32041957..32041990,+#_2036299e692d87e97fe2651539559debp3@TINAGL1
2.69e-18FFCP PHASE2:Hg19::chr1:32041957..32041990,+#_2036299e692d87e97fe2651539559debp3@TINAGL1
4.1e-18FFCP PHASE1:Hg19::chr6:132270228..132270243,-#_923189d2f2657bb3edc7e5a90ca8ffd8p17@CTGF
4.1e-18FFCP PHASE2:Hg19::chr6:132270228..132270243,-#_923189d2f2657bb3edc7e5a90ca8ffd8p17@CTGF
5.7e-18FFCP PHASE1:Hg19::chr11:940729..940745,+#_8fb52c7dfdf917326cc275ddf57cf98cp5@AP2A2
5.7e-18FFCP PHASE2:Hg19::chr11:940729..940745,+#_8fb52c7dfdf917326cc275ddf57cf98cp5@AP2A2
6.5e-18FFCP PHASE1:Hg19::chr19:42007093..42007107,-#_106d4b951848c8ea911dd89ac084e571p@chr19:42007093..42007107, -
6.5e-18FFCP PHASE2:Hg19::chr19:42007093..42007107,-#_106d4b951848c8ea911dd89ac084e571p@chr19:42007093..42007107, -
6.99e-18FFCP PHASE1:Hg19::chrX:128781853..128781866,-#_969117dfa6819d00cf4989ca260c4627p@chrX:128781853..128781866, -
6.99e-18FFCP PHASE2:Hg19::chrX:128781853..128781866,-#_969117dfa6819d00cf4989ca260c4627p@chrX:128781853..128781866, -
1.24e-17FFCP PHASE2:Hg19::chr16:86604624..86604648,+#_98f271f7c6db484b969f40ecd9b05b56p@chr16:86604624..86604648, +
1.24e-17FFCP PHASE1:Hg19::chr16:86604624..86604648,+#_98f271f7c6db484b969f40ecd9b05b56p@chr16:86604624..86604648, +

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