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{{UBERON
{{UBERON
|id=UBERON:0010912
|alt_id=
|name=subdivision of skeleton
|namespace=
|def="Anatomical cluster consisting of the skeletal elements (i.e. bone elements, cartilage elements, cartilage condensations) that are part of an individual subdivision of the organism. Excludes joints." [UBERON:cjm, UBERONREF:0000003]
|xref=FMA:23879;;SCTID:129140006;;VSAO:0000042
|is_a=UBERON:0011216
|synonym="skeletal subdivision" EXACT [VSAO:0000042];;"subdivision of skeleton (in vivo)" RELATED [FMA:23879]
|comment=AO notes: VSAO def logically wrong
|comment=AO notes: VSAO def logically wrong
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Anatomical cluster consisting of the skeletal elements (i.e. bone elements, cartilage elements, cartilage condensations) that are part of an individual subdivision of the organism. Excludes joints." [UBERON:cjm, UBERONREF:0000003]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0010912
|is_a=UBERON:0011216
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=subdivision of skeleton
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000075;;UBERON:0004288
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Anatomical cluster consisting of the skeletal elements that are part of the skeleton.[VSAO]" xsd:string
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Anatomical cluster consisting of the skeletal elements that are part of the skeleton.[VSAO]" xsd:string
|is_obsolete=
|subset=
|preceded_by=
|synonym="skeletal subdivision" EXACT [VSAO:0000042];;"subdivision of skeleton (in vivo)" RELATED [FMA:23879]
|union_of=
|xref=FMA:23879;;SCTID:129140006;;VSAO:0000042
}}
}}

Latest revision as of 18:10, 12 September 2014

Name:subdivision of skeleton
Namespace:FANTOM
Definition:"Anatomical cluster consisting of the skeletal elements (i.e. bone elements, cartilage elements, cartilage condensations) that are part of an individual subdivision of the organism. Excludes joints." [UBERON:cjm, UBERONREF:0000003]
Xrefs:
links:

FMA:23879
SCTID:129140006

VSAO:0000042
Synonyms: "skeletal subdivision" EXACT [VSAO:0000042]
"subdivision of skeleton (in vivo)" RELATED [FMA:23879]
Comments:AO notes: VSAO def logically wrong

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0011216(organ system subdivision)
part_of:UBERON:0000075(subdivision of skeletal system),UBERON:0004288(skeleton)



Children

is a:UBERON:0001708 (jaw skeleton),UBERON:0002091 (appendicular skeleton),UBERON:0003277 (skeleton of upper jaw),UBERON:0010364 (dermal skeleton),UBERON:0010712 (limb skeleton subdivision),UBERON:0011582 (paired limb/fin skeleton),UBERON:0012476 (skeleton of pelvic complex)
disjoint from:UBERON:0002529 (limb segment),UBERON:0010538 (paired limb/fin segment)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

  • 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)
  • 1350-25C3 (bone (os femoris), neonate N20)
  • 1525-43A6 (bone (os femoris), neonate N16)
  • 1985-43F5 (bone (os femoris), neonate N02)
  • 56-12G2 (bone (os femoris), adult)

Mouse (Mus musculus)

  • 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)
  • 1350-25C3 (bone (os femoris), neonate N20)
  • 1525-43A6 (bone (os femoris), neonate N16)
  • 1985-43F5 (bone (os femoris), neonate N02)
  • 56-12G2 (bone (os femoris), adult)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0010912 (subdivision of skeleton), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr17:54893192..54893195,-#_e65afa4e69e81d10b3d1b435bf09ce7cp14@C17orf67
5.42e-195FFCP PHASE2:Hg19::chr17:54893192..54893195,-#_e65afa4e69e81d10b3d1b435bf09ce7cp14@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893213..54893220,-#_b5fb1371b858e40ca80326f6756e8babp12@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893213..54893220,-#_b5fb1371b858e40ca80326f6756e8babp12@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr8:57353655..57353662,-#_b5fb1371b858e40ca80326f6756e8babp@chr8:57353655..57353662, -
9.37e-99FFCP PHASE1:Hg19::chr17:54893269..54893278,-#_b5fb1371b858e40ca80326f6756e8babp11@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893269..54893278,-#_b5fb1371b858e40ca80326f6756e8babp11@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893292..54893300,-#_b5fb1371b858e40ca80326f6756e8babp13@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893292..54893300,-#_b5fb1371b858e40ca80326f6756e8babp13@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr8:57353655..57353662,-#_b5fb1371b858e40ca80326f6756e8babp@chr8:57353655..57353662, -
2.39e-66FFCP PHASE1:Hg19::chr5:75912402..75912418,-#_d6b7e48d65de67b857ad275cd4d5a90ep@chr5:75912402..75912418, -
2.39e-66FFCP PHASE1:Hg19::chr4:151503647..151503656,+#_d6b7e48d65de67b857ad275cd4d5a90ep14@MAB21L2
2.39e-66FFCP PHASE2:Hg19::chr5:75912402..75912418,-#_d6b7e48d65de67b857ad275cd4d5a90ep@chr5:75912402..75912418, -
2.39e-66FFCP PHASE2:Hg19::chr4:151503647..151503656,+#_d6b7e48d65de67b857ad275cd4d5a90ep14@MAB21L2
4.66e-66FFCP PHASE1:Hg19::chr4:151505582..151505614,+#_8282dc2f06076968cef0d41cb79118d9p@chr4:151505582..151505614, +
4.66e-66FFCP PHASE2:Hg19::chr4:151505582..151505614,+#_8282dc2f06076968cef0d41cb79118d9p@chr4:151505582..151505614, +
1.46e-50FFCP PHASE2:Hg19::chr8:57354278..57354286,+#_cf5ecc009d8fa308bfb7fdd7a6066408p@chr8:57354278..57354286, +
1.46e-50FFCP PHASE1:Hg19::chr17:54893196..54893207,-#_cf5ecc009d8fa308bfb7fdd7a6066408p9@C17orf67
1.46e-50FFCP PHASE2:Hg19::chr17:54893196..54893207,-#_cf5ecc009d8fa308bfb7fdd7a6066408p9@C17orf67
1.46e-50FFCP PHASE2:Hg19::chr3:157823323..157823328,+#_cf5ecc009d8fa308bfb7fdd7a6066408p17@RSRC1
1.46e-50FFCP PHASE1:Hg19::chr3:157823323..157823328,+#_cf5ecc009d8fa308bfb7fdd7a6066408p17@RSRC1
1.46e-50FFCP PHASE1:Hg19::chr8:57354278..57354286,+#_cf5ecc009d8fa308bfb7fdd7a6066408p@chr8:57354278..57354286, +
2.42e-50FFCP PHASE1:Hg19::chr8:57802672..57802682,-#_1669097a203b3c4c7eb83afd5c9447d9p@chr8:57802672..57802682, -
2.42e-50FFCP PHASE2:Hg19::chr8:57802672..57802682,-#_1669097a203b3c4c7eb83afd5c9447d9p@chr8:57802672..57802682, -
3.99e-50FFCP PHASE1:Hg19::chr12:85673913..85673919,+#_64ae8e5826146c33d082c753768dbe3bp7@ALX1
3.99e-50FFCP PHASE1:Hg19::chr17:76930661..76930674,+#_64ae8e5826146c33d082c753768dbe3bp1@AK123925
3.99e-50FFCP PHASE2:Hg19::chr5:75913767..75913778,-#_64ae8e5826146c33d082c753768dbe3bp@chr5:75913767..75913778, -
3.99e-50FFCP PHASE2:Hg19::chr17:76930661..76930674,+#_64ae8e5826146c33d082c753768dbe3bp1@AK123925
3.99e-50FFCP PHASE2:Hg19::chr12:85673913..85673919,+#_64ae8e5826146c33d082c753768dbe3bp7@ALX1
3.99e-50FFCP PHASE1:Hg19::chr5:75913767..75913778,-#_64ae8e5826146c33d082c753768dbe3bp@chr5:75913767..75913778, -
6.58e-50FFCP PHASE1:Hg19::chr13:28961248..28961262,-#_9ad92169fd82d05b3954f3bc6b09098fp23@FLT1
6.58e-50FFCP PHASE1:Hg19::chr2:33519090..33519092,+#_9ad92169fd82d05b3954f3bc6b09098fp@chr2:33519090..33519092, +
6.58e-50FFCP PHASE2:Hg19::chr13:28961248..28961262,-#_9ad92169fd82d05b3954f3bc6b09098fp23@FLT1
6.58e-50FFCP PHASE2:Hg19::chr2:33519090..33519092,+#_9ad92169fd82d05b3954f3bc6b09098fp@chr2:33519090..33519092, +
3.4e-49FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_1bed47d0ec30050f811e40e463f20adbp26@Myo18a
3.4e-49FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_1bed47d0ec30050f811e40e463f20adbp26@Myo18a
4.96e-49FFCP PHASE1:Mm9::chr8:75097542..75097549,+#_272bea4f947ac2c52d43ec6c6f50e806p@chr8:75097542..75097549, +
4.96e-49FFCP PHASE2:Mm9::chr2:32482372..32482381,+#_272bea4f947ac2c52d43ec6c6f50e806p@chr2:32482372..32482381, +
4.96e-49FFCP PHASE2:Mm9::chr9:21934585..21934591,-#_272bea4f947ac2c52d43ec6c6f50e806p@chr9:21934585..21934591, -
4.96e-49FFCP PHASE1:Mm9::chr9:21934585..21934591,-#_272bea4f947ac2c52d43ec6c6f50e806p@chr9:21934585..21934591, -
4.96e-49FFCP PHASE1:Mm9::chr2:32482372..32482381,+#_272bea4f947ac2c52d43ec6c6f50e806p@chr2:32482372..32482381, +
4.96e-49FFCP PHASE2:Mm9::chr8:75097542..75097549,+#_272bea4f947ac2c52d43ec6c6f50e806p@chr8:75097542..75097549, +
3.15e-44FFCP PHASE1:Mm9::chr6:51525810..51525817,+#_ca135afc4680b3f0bf21e567d1daefbcp@chr6:51525810..51525817, +
3.15e-44FFCP PHASE2:Mm9::chr6:51525810..51525817,+#_ca135afc4680b3f0bf21e567d1daefbcp@chr6:51525810..51525817, +
6.62e-41FFCP PHASE1:Hg19::chr8:57353666..57353675,-#_acb75afce4a90d297e0a7085c1613631p@chr8:57353666..57353675, -
6.62e-41FFCP PHASE2:Hg19::chr8:57354143..57354152,+#_acb75afce4a90d297e0a7085c1613631p@chr8:57354143..57354152, +
6.62e-41FFCP PHASE2:Hg19::chr8:57353779..57353790,-#_acb75afce4a90d297e0a7085c1613631p@chr8:57353779..57353790, -
6.62e-41FFCP PHASE2:Hg19::chr8:57353666..57353675,-#_acb75afce4a90d297e0a7085c1613631p@chr8:57353666..57353675, -
6.62e-41FFCP PHASE1:Hg19::chr8:57353779..57353790,-#_acb75afce4a90d297e0a7085c1613631p@chr8:57353779..57353790, -
6.62e-41FFCP PHASE1:Hg19::chr8:57354143..57354152,+#_acb75afce4a90d297e0a7085c1613631p@chr8:57354143..57354152, +
1.48e-40FFCP PHASE2:Hg19::chr20:49253452..49253461,-#_2cf6a12954f7353e314f26ca3277bb1dp12@FAM65C
1.48e-40FFCP PHASE1:Hg19::chr1:75600308..75600316,+#_2cf6a12954f7353e314f26ca3277bb1dp8@LHX8
1.48e-40FFCP PHASE1:Hg19::chr1:6615391..6615401,+#_2cf6a12954f7353e314f26ca3277bb1dp2@TAS1R1
1.48e-40FFCP PHASE2:Hg19::chr1:6615391..6615401,+#_2cf6a12954f7353e314f26ca3277bb1dp2@TAS1R1
1.48e-40FFCP PHASE2:Hg19::chr1:75600308..75600316,+#_2cf6a12954f7353e314f26ca3277bb1dp8@LHX8
1.48e-40FFCP PHASE1:Hg19::chr20:49253452..49253461,-#_2cf6a12954f7353e314f26ca3277bb1dp12@FAM65C
2.21e-40FFCP PHASE1:Hg19::chr5:75912831..75912842,-#_0e92d60c63e7c80b99c032d30cf880a4p@chr5:75912831..75912842, -
2.21e-40FFCP PHASE2:Hg19::chr5:75912831..75912842,-#_0e92d60c63e7c80b99c032d30cf880a4p@chr5:75912831..75912842, -
2.21e-40FFCP PHASE1:Hg19::chr16:67687543..67687559,-#_0e92d60c63e7c80b99c032d30cf880a4p@chr16:67687543..67687559, -
2.21e-40FFCP PHASE2:Hg19::chr16:67687543..67687559,-#_0e92d60c63e7c80b99c032d30cf880a4p@chr16:67687543..67687559, -
3.3e-40FFCP PHASE1:Hg19::chr9:125165007..125165016,+#_4cf92d3eb870506b7e9f08e354698737p@chr9:125165007..125165016, +
3.3e-40FFCP PHASE1:Hg19::chr6:46190219..46190230,-#_4cf92d3eb870506b7e9f08e354698737p@chr6:46190219..46190230, -
3.3e-40FFCP PHASE2:Hg19::chr9:125165007..125165016,+#_4cf92d3eb870506b7e9f08e354698737p@chr9:125165007..125165016, +
3.3e-40FFCP PHASE2:Hg19::chr6:46190219..46190230,-#_4cf92d3eb870506b7e9f08e354698737p@chr6:46190219..46190230, -
9.78e-40FFCP PHASE1:Mm9::chr19:4876870..4876880,-#_33c3385048cf118c0d648ae911d97deap@chr19:4876870..4876880, -
9.78e-40FFCP PHASE2:Mm9::chr19:4876870..4876880,-#_33c3385048cf118c0d648ae911d97deap@chr19:4876870..4876880, -
1.15e-39FFCP PHASE2:Mm9::chr6:4490674..4490679,+#_e9337534b889ef68b395634fc8a55c2bp@chr6:4490674..4490679, +
1.15e-39FFCP PHASE1:Mm9::chr1:174140324..174140335,-#_e9337534b889ef68b395634fc8a55c2bp@chr1:174140324..174140335, -
1.15e-39FFCP PHASE2:Mm9::chr16:24096441..24096449,+#_e9337534b889ef68b395634fc8a55c2bp@chr16:24096441..24096449, +
1.15e-39FFCP PHASE1:Mm9::chr16:24096441..24096449,+#_e9337534b889ef68b395634fc8a55c2bp@chr16:24096441..24096449, +
1.15e-39FFCP PHASE1:Mm9::chr6:4490674..4490679,+#_e9337534b889ef68b395634fc8a55c2bp@chr6:4490674..4490679, +
1.15e-39FFCP PHASE1:Mm9::chr11:67063327..67063335,+#_e9337534b889ef68b395634fc8a55c2bp@chr11:67063327..67063335, +
1.15e-39FFCP PHASE2:Mm9::chr1:174140324..174140335,-#_e9337534b889ef68b395634fc8a55c2bp@chr1:174140324..174140335, -
1.15e-39FFCP PHASE2:Mm9::chr11:67063327..67063335,+#_e9337534b889ef68b395634fc8a55c2bp@chr11:67063327..67063335, +
1.55e-39FFCP PHASE1:Mm9::chr1:174143249..174143260,-#_d4f366fc53dfb99cd9b6dfc374d69c41p@chr1:174143249..174143260, -
1.55e-39FFCP PHASE2:Mm9::chr1:174143249..174143260,-#_d4f366fc53dfb99cd9b6dfc374d69c41p@chr1:174143249..174143260, -
3.03e-39FFCP PHASE1:Mm9::chr6:51525869..51525891,+#_897037edf0d784d7d1d0ae11a70692bdp@chr6:51525869..51525891, +
3.03e-39FFCP PHASE2:Mm9::chr6:51525869..51525891,+#_897037edf0d784d7d1d0ae11a70692bdp@chr6:51525869..51525891, +
9.31e-39FFCP PHASE1:Mm9::chr11:102130083..102130092,+#_044e6d7050ee2805f20b8d87bdfa827dp3@Asb16
9.31e-39FFCP PHASE2:Mm9::chr11:102130083..102130092,+#_044e6d7050ee2805f20b8d87bdfa827dp3@Asb16
2.41e-35FFCP PHASE1:Mm9::chr7:133604286..133604297,-#_fc93a779d55ca5699127e920bdad43c5p@chr7:133604286..133604297, -
2.41e-35FFCP PHASE2:Mm9::chr7:133604286..133604297,-#_fc93a779d55ca5699127e920bdad43c5p@chr7:133604286..133604297, -
2.95e-35FFCP PHASE1:Mm9::chr4:138365748..138365759,-#_b080f9c477c4d6b5782bec3587ec80a2p5@Pla2g5
2.95e-35FFCP PHASE2:Mm9::chr4:138365748..138365759,-#_b080f9c477c4d6b5782bec3587ec80a2p5@Pla2g5
1.84e-34FFCP PHASE2:Hg19::chr8:57359557..57359570,-#_2980b43b1d26238154ed90865e39dbddp5@PENK
1.84e-34FFCP PHASE1:Hg19::chr4:8594472..8594473,+#_2980b43b1d26238154ed90865e39dbddp4@CPZ
1.84e-34FFCP PHASE1:Hg19::chr10:15760985..15760992,-#_2980b43b1d26238154ed90865e39dbddp@chr10:15760985..15760992, -
1.84e-34FFCP PHASE2:Hg19::chr4:8594472..8594473,+#_2980b43b1d26238154ed90865e39dbddp4@CPZ
1.84e-34FFCP PHASE1:Hg19::chr8:57359557..57359570,-#_2980b43b1d26238154ed90865e39dbddp5@PENK
1.84e-34FFCP PHASE2:Hg19::chr10:15760985..15760992,-#_2980b43b1d26238154ed90865e39dbddp@chr10:15760985..15760992, -
2.58e-34FFCP PHASE1:Hg19::chr14:61125018..61125037,-#_7faa7adcef287dce5ad94534dc810b93p9@SIX1
2.58e-34FFCP PHASE2:Hg19::chr14:61125018..61125037,-#_7faa7adcef287dce5ad94534dc810b93p9@SIX1
5.05e-34FFCP PHASE2:Hg19::chr6:134327986..134327991,-#_0176910b868671e121828f2c60bd518bp@chr6:134327986..134327991, -
5.05e-34FFCP PHASE1:Hg19::chr6:134327986..134327991,-#_0176910b868671e121828f2c60bd518bp@chr6:134327986..134327991, -
7.06e-34FFCP PHASE1:Hg19::chr13:58291223..58291226,+#_62fd4e8a6e835696d1a0a7ef15d091d9p@chr13:58291223..58291226, +
7.06e-34FFCP PHASE1:Hg19::chr8:57353676..57353688,-#_62fd4e8a6e835696d1a0a7ef15d091d9p@chr8:57353676..57353688, -
7.06e-34FFCP PHASE2:Hg19::chr13:58291223..58291226,+#_62fd4e8a6e835696d1a0a7ef15d091d9p@chr13:58291223..58291226, +
7.06e-34FFCP PHASE2:Hg19::chr8:57353676..57353688,-#_62fd4e8a6e835696d1a0a7ef15d091d9p@chr8:57353676..57353688, -
9.53e-34FFCP PHASE1:Mm9::chr8:74049600..74049612,-#_9137eb4b1a96f25435bac9bff1dcd16ap2@uc009mdq.1
9.53e-34FFCP PHASE2:Mm9::chr8:74049600..74049612,-#_9137eb4b1a96f25435bac9bff1dcd16ap2@uc009mdq.1










Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical cluster consisting of the skeletal elements that are part of the skeleton.[VSAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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