FFCP PHASE1:Hg19::chr10:129979383..129979404,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_uc001lkg.1_5end | |association_with_transcript=0bp_to_uc001lkg.1_5end | ||
|cluster_id=chr10:129979383..129979404,+ | |||
|coexpression_cluster_id=C974 | |||
|description=CAGE_peak_3_at_uc001lkg.1_5end | |description=CAGE_peak_3_at_uc001lkg.1_5end | ||
|id=chr10:129979383..129979404,+ | |id=chr10:129979383..129979404,+ | ||
|ontology_enrichment_celltype=CL:0000084!1.17e-20!25;CL:0000827!1.17e-20!25;CL:0000791!2.22e-14!18;CL:0000789!2.22e-14!18;CL:0002420!2.22e-14!18;CL:0002419!2.22e-14!18;CL:0000790!2.22e-14!18;CL:0000838!5.35e-13!52;CL:0000542!1.04e-12!53;CL:0000051!1.04e-12!53;CL:0000893!3.31e-12!2;CL:0002489!3.31e-12!2;CL:0000809!3.31e-12!2;CL:0000808!3.31e-12!2;CL:0000894!3.31e-12!2;CL:0000806!3.31e-12!2;CL:0000807!3.31e-12!2;CL:0000805!3.31e-12!2;CL:0002425!3.31e-12!2;CL:0000898!2.16e-08!3;CL:0000625!2.93e-08!11;CL:0002127!3.57e-07!1;CL:0000914!3.57e-07!1;CL:0000911!3.57e-07!1;CL:0000814!3.57e-07!1;CL:0002042!3.57e-07!1;CL:0002039!3.57e-07!1;CL:0002040!3.57e-07!1;CL:0002041!3.57e-07!1 | |ontology_enrichment_celltype=CL:0000084!1.17e-20!25;CL:0000827!1.17e-20!25;CL:0000791!2.22e-14!18;CL:0000789!2.22e-14!18;CL:0002420!2.22e-14!18;CL:0002419!2.22e-14!18;CL:0000790!2.22e-14!18;CL:0000838!5.35e-13!52;CL:0000542!1.04e-12!53;CL:0000051!1.04e-12!53;CL:0000893!3.31e-12!2;CL:0002489!3.31e-12!2;CL:0000809!3.31e-12!2;CL:0000808!3.31e-12!2;CL:0000894!3.31e-12!2;CL:0000806!3.31e-12!2;CL:0000807!3.31e-12!2;CL:0000805!3.31e-12!2;CL:0002425!3.31e-12!2;CL:0000898!2.16e-08!3;CL:0000625!2.93e-08!11;CL:0002127!3.57e-07!1;CL:0000914!3.57e-07!1;CL:0000911!3.57e-07!1;CL:0000814!3.57e-07!1;CL:0002042!3.57e-07!1;CL:0002039!3.57e-07!1;CL:0002040!3.57e-07!1;CL:0002041!3.57e-07!1 | ||
|ontology_enrichment_celltype_v019=CL:0002127;6.98e-21;1!CL:0000911;6.98e-21;1!CL:0000814;6.98e-21;1!CL:0000784;6.13e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002127,9.43e-21,1;CL:0000914,9.43e-21,1;CL:0000911,9.43e-21,1;CL:0000814,9.43e-21,1;CL:0002042,9.43e-21,1;CL:0002039,9.43e-21,1;CL:0002040,9.43e-21,1;CL:0002041,9.43e-21,1;CL:0000893,4.52e-11,2;CL:0002489,4.52e-11,2;CL:0000809,4.52e-11,2;CL:0000808,4.52e-11,2;CL:0000894,4.52e-11,2;CL:0000806,4.52e-11,2;CL:0000807,4.52e-11,2;CL:0000805,4.52e-11,2;CL:0002425,4.52e-11,2;CL:0000784,6.34e-08,3 | |||
|ontology_enrichment_development_v019=CL:0002425;3.89e-11;2 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002370!2.07e-23!4;UBERON:0005058!2.07e-23!4;UBERON:0009113!2.07e-23!4;UBERON:0003295!2.07e-23!4;UBERON:0005562!2.07e-23!4;UBERON:0004177!4.09e-20!7;UBERON:0003351!1.14e-15!6;UBERON:0000974!1.92e-09!10;UBERON:0003408!1.92e-09!10;UBERON:0001042!1.92e-09!10;UBERON:0009145!1.92e-09!10;UBERON:0006562!1.36e-08!11;UBERON:0009722!1.36e-08!11;UBERON:0007690!1.36e-08!11;UBERON:0000989!8.49e-07!1;UBERON:0008811!8.49e-07!1;UBERON:0006258!8.49e-07!1;UBERON:0005876!8.49e-07!1;UBERON:0004874!8.49e-07!1;UBERON:0007029!8.98e-07!1 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;1.34e-40;2!UBERON:0005058;1.34e-40;2!UBERON:0009113;1.34e-40;2!UBERON:0004177;6.40e-17;5!UBERON:0005057;6.40e-17;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,6.58e-45,4;UBERON:0005058,6.58e-45,4;UBERON:0009113,6.58e-45,4;UBERON:0003295,6.58e-45,4;UBERON:0005562,6.58e-45,4;UBERON:0003351,3.08e-30,6;UBERON:0004177,4.87e-26,7;UBERON:0005057,4.87e-26,7;UBERON:0000974,1.83e-18,10;UBERON:0003408,1.83e-18,10;UBERON:0001042,1.83e-18,10;UBERON:0009145,1.83e-18,10;UBERON:0006562,7.48e-17,11;UBERON:0009722,7.48e-17,11;UBERON:0007690,7.48e-17,11;UBERON:0008814,1.46e-10,18;UBERON:0001557,4.87e-10,19;UBERON:0004807,5.36e-07,28;UBERON:0000077,8.95e-07,29 | |||
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|short_description=p3@uc001lkg.1 | |short_description=p3@uc001lkg.1 | ||
}} | }} |
Latest revision as of 11:39, 23 July 2015
Short description: | p3@uc001lkg.1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_uc001lkg.1_5end |
Coexpression cluster: | C974_Dendritic_CD8_CD4_Natural_NK_B_Basophils |
Association with transcript: | 0bp_to_uc001lkg.1_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
innate effector T cell | 9.43e-21 | 1 |
immature NK T cell | 9.43e-21 | 1 |
effector T cell | 9.43e-21 | 1 |
mature NK T cell | 9.43e-21 | 1 |
immature NK T cell stage IV | 9.43e-21 | 1 |
immature NK T cell stage I | 9.43e-21 | 1 |
immature NK T cell stage II | 9.43e-21 | 1 |
immature NK T cell stage III | 9.43e-21 | 1 |
thymocyte | 4.52e-11 | 2 |
double negative thymocyte | 4.52e-11 | 2 |
double-positive, alpha-beta thymocyte | 4.52e-11 | 2 |
DN4 thymocyte | 4.52e-11 | 2 |
DN1 thymic pro-T cell | 4.52e-11 | 2 |
DN2 thymocyte | 4.52e-11 | 2 |
DN3 thymocyte | 4.52e-11 | 2 |
immature single positive thymocyte | 4.52e-11 | 2 |
early T lineage precursor | 4.52e-11 | 2 |
plasmacytoid dendritic cell | 6.34e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
thymus | 6.58e-45 | 4 |
hemolymphoid system gland | 6.58e-45 | 4 |
thymic region | 6.58e-45 | 4 |
pharyngeal gland | 6.58e-45 | 4 |
thymus primordium | 6.58e-45 | 4 |
pharyngeal epithelium | 3.08e-30 | 6 |
hemopoietic organ | 4.87e-26 | 7 |
immune organ | 4.87e-26 | 7 |
neck | 1.83e-18 | 10 |
gland of gut | 1.83e-18 | 10 |
chordate pharynx | 1.83e-18 | 10 |
pharyngeal region of foregut | 1.83e-18 | 10 |
pharynx | 7.48e-17 | 11 |
entire pharyngeal arch endoderm | 7.48e-17 | 11 |
early pharyngeal endoderm | 7.48e-17 | 11 |
pharyngeal arch system | 1.46e-10 | 18 |
upper respiratory tract | 4.87e-10 | 19 |
respiratory system epithelium | 5.36e-07 | 28 |
mixed endoderm/mesoderm-derived structure | 8.95e-07 | 29 |