FFCP PHASE1:Hg19::chr11:10396160..10396175,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr11:10396160..10396175,+
|short_description=p@chr11:10396160..10396175,+
|description=CAGE_peak_at_chr11:10396160..10396175,+
|association_with_transcript=NA
...") |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr11:10396160..10396175,+ | |||
|description=CAGE_peak_at_chr11:10396160..10396175,+ | |||
|id=chr11:10396160..10396175,+ | |||
|ontology_enrichment_celltype=CL:0000055!5.40e-21!180;CL:0000057!7.30e-19!75;CL:0000359!3.51e-17!32;CL:0002334!6.01e-16!12;CL:0000048!5.76e-15!430;CL:0000723!2.07e-14!436;CL:0000680!4.37e-14!57;CL:0000056!4.37e-14!57;CL:0000355!4.37e-14!57;CL:0000034!1.07e-13!444;CL:0000187!7.71e-13!54;CL:0002620!2.09e-12!23;CL:0000192!1.10e-11!42;CL:0000514!1.10e-11!42;CL:0000183!3.67e-11!59;CL:0000393!7.32e-11!60;CL:0000211!7.32e-11!60;CL:0002539!1.31e-08!10;CL:0000144!5.45e-08!625;CL:1000306!1.58e-07!4;CL:0002547!1.58e-07!4;CL:0002371!1.96e-07!591;CL:0000222!4.77e-07!119;CL:0000569!7.93e-07!4;CL:0000011!7.93e-07!4 | |||
|ontology_enrichment_celltype_v019=CL:0002334;6.15e-14;12!CL:0002596;7.33e-11;2!CL:0000359;1.62e-10;32!CL:0002539;2.29e-08;10!CL:0000192;1.48e-07;43!CL:0002580;1.89e-07;3!CL:0002579;1.89e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002334,8.76e-14,12;CL:0000359,4.75e-11,32;CL:0002596,5.21e-11,2;CL:0002539,2.21e-08,10;CL:0000192,8.07e-08,43;CL:0000514,8.07e-08,43;CL:0000057,8.67e-08,76;CL:0000136,1.15e-07,15;CL:0002580,2.49e-07,3;CL:0000048,3.11e-07,427;CL:0002579,3.21e-07,3;CL:0000723,4.97e-07,433;CL:0000034,9.11e-07,441 | |||
|ontology_enrichment_development_v019=CL:0000514;1.48e-07;43 | |||
|ontology_enrichment_disease=DOID:2394!1.49e-14!14;DOID:17!2.23e-08!5;DOID:450!2.23e-08!5;DOID:66!2.23e-08!5;DOID:423!2.23e-08!5;DOID:0080000!2.23e-08!5;DOID:11722!2.23e-08!5 | |||
|ontology_enrichment_disease_v019=DOID:2394;1.47e-21;14!DOID:120;1.48e-10;27!DOID:193;9.68e-10;29!DOID:0060084;3.31e-07;3!DOID:127;3.31e-07;3 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.93e-21,14;DOID:120,1.69e-10,27;DOID:193,1.09e-09,29;DOID:0060084,1.64e-07,3;DOID:127,1.64e-07,3 | |||
|ontology_enrichment_uberon=UBERON:0004573!5.30e-19!33;UBERON:0004571!5.30e-19!33;UBERON:0001637!1.73e-16!42;UBERON:0003509!1.73e-16!42;UBERON:0004572!1.73e-16!42;UBERON:0004290!3.58e-13!70;UBERON:0001134!1.16e-12!61;UBERON:0002036!1.16e-12!61;UBERON:0003082!1.16e-12!61;UBERON:0002385!5.07e-12!63;UBERON:0001015!5.07e-12!63;UBERON:0000383!5.07e-12!63;UBERON:0000914!1.30e-11!83;UBERON:0002329!1.30e-11!83;UBERON:0003077!1.30e-11!83;UBERON:0003059!1.30e-11!83;UBERON:0007282!1.30e-11!83;UBERON:0009618!1.30e-11!83;UBERON:0007285!1.30e-11!83;UBERON:0000486!5.33e-11!82;UBERON:0001981!1.81e-10!60;UBERON:0007500!1.81e-10!60;UBERON:0004537!1.81e-10!60;UBERON:0006965!1.81e-10!60;UBERON:0004872!2.87e-10!84;UBERON:0002199!1.42e-09!45;UBERON:0002416!1.42e-09!45;UBERON:0004237!1.31e-08!10;UBERON:0004695!1.31e-08!10;UBERON:0002111!1.31e-08!10;UBERON:0004178!1.31e-08!10;UBERON:0000947!1.94e-08!21;UBERON:0010191!1.94e-08!21;UBERON:0000992!2.45e-08!13;UBERON:0000055!2.91e-08!69;UBERON:0002119!6.77e-08!4;UBERON:0004531!6.77e-08!4;UBERON:0002097!1.05e-07!40;UBERON:0000415!1.58e-07!4;UBERON:0007240!1.58e-07!4;UBERON:0005742!1.58e-07!4;UBERON:0005734!1.58e-07!4;UBERON:0004664!1.58e-07!4;UBERON:0004663!1.58e-07!4;UBERON:0002118!9.71e-07!5;UBERON:0004532!9.71e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0002118;3.85e-16;5!UBERON:0004573;1.28e-14;33!UBERON:0004571;1.28e-14;33!UBERON:0000992;3.88e-13;13!UBERON:0005396;7.33e-11;2!UBERON:0000991;1.55e-10;21!UBERON:0005406;2.13e-10;2!UBERON:0004237;2.29e-08;10!UBERON:0004695;2.29e-08;10!UBERON:0002111;2.29e-08;10!UBERON:0004178;2.29e-08;10!UBERON:0000947;4.07e-08;21!UBERON:0010191;4.07e-08;21!UBERON:0003688;8.79e-08;6!UBERON:0002358;8.79e-08;6!UBERON:0003684;8.79e-08;6!UBERON:0001178;8.79e-08;6!UBERON:0001637;1.63e-07;42!UBERON:0003509;1.63e-07;42!UBERON:0004572;1.63e-07;42!UBERON:0003134;8.30e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002118,5.20e-16,5;UBERON:0004573,5.45e-16,33;UBERON:0004571,5.45e-16,33;UBERON:0000992,4.54e-13,13;UBERON:0001637,4.34e-12,42;UBERON:0003509,4.34e-12,42;UBERON:0004572,4.34e-12,42;UBERON:0005396,5.21e-11,2;UBERON:0005406,9.88e-11,2;UBERON:0000991,1.52e-10,21;UBERON:0009196,1.52e-10,21;UBERON:0009117,1.52e-10,21;UBERON:0005564,1.52e-10,21;UBERON:0004176,5.06e-10,22;UBERON:0002323,1.30e-08,46;UBERON:0004237,2.21e-08,10;UBERON:0004695,2.21e-08,10;UBERON:0002111,2.21e-08,10;UBERON:0004178,2.21e-08,10;UBERON:0000947,4.47e-08,21;UBERON:0010191,4.47e-08,21;UBERON:0007500,5.51e-08,59;UBERON:0001981,5.51e-08,59;UBERON:0004537,5.51e-08,59;UBERON:0006965,5.51e-08,59;UBERON:0004458,5.63e-08,49;UBERON:0003688,1.61e-07,6;UBERON:0002358,1.61e-07,6;UBERON:0003684,1.61e-07,6;UBERON:0001178,1.61e-07,6;UBERON:0004872,2.92e-07,83;UBERON:0003134,2.98e-07,37;UBERON:0000474,2.98e-07,37;UBERON:0003886,4.50e-07,54 | |||
|phase1_expression=1.09007027562334,0,1.12763523276777,0,0,1.74467704820074,0,1.89515962028049,0,0,0,0,0,0,0,0,0.602694528023977,0.730310090387373,0.487932798790507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.379891534993739,5.03154887090231,1.14734648299525,0.354668382198357,0,0,0,0,0,0,0,0,0,0.624320153660641,0,0.149448680551801,0,0,0,0.204154171254893,0,0.103325781175765,0,0,0,0,0,0,0.554128230968366,0,0,0,0,1.25572744982203,0.213557388818567,1.27159140695737,0.300091096084402,0.412210116953756,1.03056216018252,0.37223371266318,1.5189869901714,0.0974370051611986,0.252433774244115,0.460249493211497,0.323292113637624,0,0.403008392910561,0,0,0,0,0,0,0,0,0,0,0,0.643240938192885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0.845302752556,0.531876233169741,0,0,0,0.532844358032199,0,0,0,0.325736184293735,0,0,0.904318131178758,0.871533458600294,0.599837947092342,0,0,0,0,0,0,0.144781306667579,0,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.415941723061614,1.42743191037729,0.315404830067869,0.937131319941706,0,0,0,0,0,0.260650843404249,0,0,0,0,0,0,0,0,2.97729369382532,1.07423381301644,0.280660094433074,2.05022638809122,1.02341449813341,0.321707842287215,1.48418066444991,0.308419387605311,0.710246901252508,1.47828880824856,0,0.348631135379878,0,0.200506470303285,0,0,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,1.6068392984416,0.096670718292122,0,0,0.137836572484531,0.107420244868274,0.145016693914229,0.340906509664404,0,0,0,0,0,3.71876439437829,5.35180989612088,2.0911118104818,0,0,2.60979897622522,0.55597265731176,0.429374660225974,0,0,0,0,0,3.5002357271853,1.56989728039846,0,0,0,1.41527737101321,0,0.421258456238981,0,0.243713489631284,0,0,0,0,0.551365343546124,1.99031692572366,1.31535265576129,0,0,0,0.30982349809975,0,0.143411352204052,0,0.35667105148125,0,0,0.658589785919804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111308705022906,0.824019371133798,0,0,0,0,0,0,2.48831670129446,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31900115973192,0.915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.72844298240254,1.95952416065645,0,0,0.170388021785422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.5013797880454,0.612691153526923,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189403005275089,0.50313580350515,0.889811221596536,0.228840068396924,0.756154618816195,0.15543720058278,1.18284119991707,2.23015474029183,1.34940933649081,0.621051827505038,0.829412415681711,0.265841714557995,2.08698024724694,0,4.56966254602554,1.22061219961398,1.27294061441792,0,4.64033759878494,8.36001366267094,0,1.37358282073117,0,0,0,0,0,0,0,0,0,0,0.219284049578707,0.353378291891762,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21023041222112,0,0,0,0,0,0,0,0,0,0,0,0.175871244359621,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118332000730565,0.0852134047591577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.339854229375634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.924351257262837,1.29787968637137,0,0.109265571963696,0,0,0,0,0,0,0,0,0,0,0,0,0.0620747142958579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=1.09007027562334,0,1.12763523276777,0,0,1.74467704820074,0,1.89515962028049,0,0,0,0,0,0,0,0,0.602694528023977,0.730310090387373,0.487932798790507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.379891534993739,5.03154887090231,1.14734648299525,0.354668382198357,0,0,0,0,0,0,0,0,0,0.624320153660641,0,0.149448680551801,0,0,0,0.204154171254893,0,0.103325781175765,0,0,0,0,0,0,0.554128230968366,0,0,0,0,1.25572744982203,0.213557388818567,1.27159140695737,0.300091096084402,0.412210116953756,1.03056216018252,0.37223371266318,1.5189869901714,0.0974370051611986,0.252433774244115,0.460249493211497,0.323292113637624,0,0.403008392910561,0,0,0,0,0,0,0,0,0,0,0,0.643240938192885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0.845302752556,0.531876233169741,0,0,0,0.532844358032199,0,0,0,0.325736184293735,0,0,0.904318131178758,0.871533458600294,0.599837947092342,0,0,0,0,0,0,0.144781306667579,0,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.415941723061614,1.42743191037729,0.315404830067869,0.937131319941706,0,0,0,0,0,0.260650843404249,0,0,0,0,0,0,0,0,2.97729369382532,1.07423381301644,0.280660094433074,2.05022638809122,1.02341449813341,0.321707842287215,1.48418066444991,0.308419387605311,0.710246901252508,1.47828880824856,0,0.348631135379878,0,0.200506470303285,0,0,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,1.6068392984416,0.096670718292122,0,0,0.137836572484531,0.107420244868274,0.145016693914229,0.340906509664404,0,0,0,0,0,3.71876439437829,5.35180989612088,2.0911118104818,0,0,2.60979897622522,0.55597265731176,0.429374660225974,0,0,0,0,0,3.5002357271853,1.56989728039846,0,0,0,1.41527737101321,0,0.421258456238981,0,0.243713489631284,0,0,0,0,0.551365343546124,1.99031692572366,1.31535265576129,0,0,0,0.30982349809975,0,0.143411352204052,0,0.35667105148125,0,0,0.658589785919804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111308705022906,0.824019371133798,0,0,0,0,0,0,2.48831670129446,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31900115973192,0.915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.72844298240254,1.95952416065645,0,0,0.170388021785422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.5013797880454,0.612691153526923,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189403005275089,0.50313580350515,0.889811221596536,0.228840068396924,0.756154618816195,0.15543720058278,1.18284119991707,2.23015474029183,1.34940933649081,0.621051827505038,0.829412415681711,0.265841714557995,2.08698024724694,0,4.56966254602554,1.22061219961398,1.27294061441792,0,4.64033759878494,8.36001366267094,0,1.37358282073117,0,0,0,0,0,0,0,0,0,0,0.219284049578707,0.353378291891762,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21023041222112,0,0,0,0,0,0,0,0,0,0,0,0.175871244359621,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118332000730565,0.0852134047591577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.339854229375634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.924351257262837,1.29787968637137,0,0.109265571963696,0,0,0,0,0,0,0,0,0,0,0,0,0.0620747142958579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr11:10396160..10396175,+ | |||
}} | }} |
Latest revision as of 17:37, 23 July 2015
Short description: | p@chr11:10396160..10396175, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr11:10396160..10396175, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
preadipocyte | 8.76e-14 | 12 |
vascular associated smooth muscle cell | 4.75e-11 | 32 |
smooth muscle cell of the carotid artery | 5.21e-11 | 2 |
aortic smooth muscle cell | 2.21e-08 | 10 |
smooth muscle cell | 8.07e-08 | 43 |
smooth muscle myoblast | 8.07e-08 | 43 |
fibroblast | 8.67e-08 | 76 |
fat cell | 1.15e-07 | 15 |
preadipocyte of the breast | 2.49e-07 | 3 |
multi fate stem cell | 3.11e-07 | 427 |
omentum preadipocyte | 3.21e-07 | 3 |
somatic stem cell | 4.97e-07 | 433 |
stem cell | 9.11e-07 | 441 |
Ontology term | p-value | n |
---|---|---|
right ovary | 5.20e-16 | 5 |
systemic artery | 5.45e-16 | 33 |
systemic arterial system | 5.45e-16 | 33 |
female gonad | 4.54e-13 | 13 |
artery | 4.34e-12 | 42 |
arterial blood vessel | 4.34e-12 | 42 |
arterial system | 4.34e-12 | 42 |
carotid artery segment | 5.21e-11 | 2 |
perirenal fat | 9.88e-11 | 2 |
gonad | 1.52e-10 | 21 |
indifferent external genitalia | 1.52e-10 | 21 |
indifferent gonad | 1.52e-10 | 21 |
gonad primordium | 1.52e-10 | 21 |
external genitalia | 5.06e-10 | 22 |
body cavity | 1.30e-08 | 46 |
blood vessel smooth muscle | 2.21e-08 | 10 |
arterial system smooth muscle | 2.21e-08 | 10 |
artery smooth muscle tissue | 2.21e-08 | 10 |
aorta smooth muscle tissue | 2.21e-08 | 10 |
aorta | 4.47e-08 | 21 |
aortic system | 4.47e-08 | 21 |
epithelial tube open at both ends | 5.51e-08 | 59 |
blood vessel | 5.51e-08 | 59 |
blood vasculature | 5.51e-08 | 59 |
vascular cord | 5.51e-08 | 59 |
body cavity or lining | 5.63e-08 | 49 |
omentum | 1.61e-07 | 6 |
peritoneum | 1.61e-07 | 6 |
abdominal cavity | 1.61e-07 | 6 |
visceral peritoneum | 1.61e-07 | 6 |
splanchnic layer of lateral plate mesoderm | 2.92e-07 | 83 |
female reproductive organ | 2.98e-07 | 37 |
female reproductive system | 2.98e-07 | 37 |
body cavity precursor | 4.50e-07 | 54 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.93e-21 | 14 |
female reproductive organ cancer | 1.69e-10 | 27 |
reproductive organ cancer | 1.09e-09 | 29 |
cell type benign neoplasm | 1.64e-07 | 3 |
leiomyoma | 1.64e-07 | 3 |