FFCP PHASE1:Hg19::chr11:2152575..2152590,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr11:2152575..2152590,+ | |||
|coexpression_cluster_id=C172 | |||
|description=CAGE_peak_at_chr11:2152575..2152590,+ | |description=CAGE_peak_at_chr11:2152575..2152590,+ | ||
|id=chr11:2152575..2152590,+ | |id=chr11:2152575..2152590,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000349;6.52e-20;19!CL:0002541;2.28e-09;3!CL:0002564;1.53e-08;3!CL:0002575;2.52e-07;2!CL:0002536;2.96e-07;2!CL:0000669;3.48e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,6.68e-20,19;CL:0002541,2.87e-09,3;CL:0002564,1.10e-08,3;CL:0002575,2.52e-07,2;CL:0002536,3.02e-07,2;CL:0000669,3.05e-07,4 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!1.71e-14!14;UBERON:0000158!1.71e-14!14;UBERON:0000478!2.39e-12!24;UBERON:0003124!2.84e-09!7;UBERON:0004119!1.12e-07!169;UBERON:0000925!1.12e-07!169;UBERON:0006595!1.12e-07!169;UBERON:0005256!2.97e-07!143;UBERON:0000481!4.66e-07!347;UBERON:0000305!6.10e-07!7 | |ontology_enrichment_uberon=UBERON:0005631!1.71e-14!14;UBERON:0000158!1.71e-14!14;UBERON:0000478!2.39e-12!24;UBERON:0003124!2.84e-09!7;UBERON:0004119!1.12e-07!169;UBERON:0000925!1.12e-07!169;UBERON:0006595!1.12e-07!169;UBERON:0005256!2.97e-07!143;UBERON:0000481!4.66e-07!347;UBERON:0000305!6.10e-07!7 | ||
|ontology_enrichment_uberon_v019=UBERON:0000478;9.60e-21;24!UBERON:0005631;5.30e-18;10!UBERON:0000158;5.30e-18;10!UBERON:0000305;9.18e-11;7!UBERON:0003124;2.28e-09;3!UBERON:0000920;2.28e-09;3!UBERON:0011135;9.04e-09;5!UBERON:0002216;9.04e-09;5!UBERON:0011134;9.04e-09;5!UBERON:0002209;9.04e-09;5!UBERON:0002213;9.04e-09;5!UBERON:0007844;9.04e-09;5!UBERON:0011138;9.04e-09;5!UBERON:0001130;9.04e-09;5!UBERON:0001066;9.04e-09;5!UBERON:0001468;9.04e-09;5!UBERON:0002242;1.53e-08;3!UBERON:0001987;2.44e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.45e-23,14;UBERON:0000158,1.45e-23,14;UBERON:0000478,9.91e-21,24;UBERON:0003124,1.17e-14,7;UBERON:0000305,9.88e-11,7;UBERON:0004871,2.49e-09,8;UBERON:0000920,2.87e-09,3;UBERON:0011135,7.11e-09,5;UBERON:0002216,7.11e-09,5;UBERON:0011134,7.11e-09,5;UBERON:0002209,7.11e-09,5;UBERON:0002213,7.11e-09,5;UBERON:0005856,7.11e-09,5;UBERON:0005866,7.11e-09,5;UBERON:0005863,7.11e-09,5;UBERON:0007844,7.11e-09,5;UBERON:0011138,7.11e-09,5;UBERON:0001130,7.11e-09,5;UBERON:0001066,7.11e-09,5;UBERON:0001468,7.11e-09,5;UBERON:0002242,1.10e-08,3;UBERON:0003068,1.10e-08,3;UBERON:0002328,1.10e-08,3;UBERON:0004880,1.10e-08,3;UBERON:0001987,2.47e-07,4;UBERON:0004340,2.47e-07,4 | |||
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| ||
|short_description=p@chr11:2152575..2152590,+ | |short_description=p@chr11:2152575..2152590,+ | ||
}} | }} |
Latest revision as of 20:59, 23 July 2015
Short description: | p@chr11:2152575..2152590, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr11:2152575..2152590, + |
Coexpression cluster: | C172_chorionic_skeletal_tongue_amniotic_liver_gastrointestinal_Pericytes |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 6.68e-20 | 19 |
chorionic membrane mesenchymal stem cell | 2.87e-09 | 3 |
nucleus pulposus cell of intervertebral disc | 1.10e-08 | 3 |
central nervous system pericyte | 2.52e-07 | 2 |
amniotic epithelial cell | 3.02e-07 | 2 |
pericyte cell | 3.05e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 1.45e-23 | 14 |
membranous layer | 1.45e-23 | 14 |
extraembryonic structure | 9.91e-21 | 24 |
chorion | 1.17e-14 | 7 |
amnion | 9.88e-11 | 7 |
somatic layer of lateral plate mesoderm | 2.49e-09 | 8 |
egg chorion | 2.87e-09 | 3 |
intervertebral cartilage | 7.11e-09 | 5 |
symphysis | 7.11e-09 | 5 |
nonsynovial joint | 7.11e-09 | 5 |
fibrous joint | 7.11e-09 | 5 |
cartilaginous joint | 7.11e-09 | 5 |
developing mesenchymal condensation | 7.11e-09 | 5 |
pre-cartilage condensation | 7.11e-09 | 5 |
cartilaginous condensation | 7.11e-09 | 5 |
cartilage element | 7.11e-09 | 5 |
post-cranial axial skeletal system | 7.11e-09 | 5 |
vertebral column | 7.11e-09 | 5 |
intervertebral disk | 7.11e-09 | 5 |
intervertebral joint | 7.11e-09 | 5 |
nucleus pulposus | 1.10e-08 | 3 |
axial mesoderm | 1.10e-08 | 3 |
notochord | 1.10e-08 | 3 |
chordamesoderm | 1.10e-08 | 3 |
placenta | 2.47e-07 | 4 |
allantois | 2.47e-07 | 4 |