FFCP PHASE1:Hg19::chr12:10516306..10516316,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-51bp_to_ENST00000500682,uc001qya.1_5end | |association_with_transcript=-51bp_to_ENST00000500682,uc001qya.1_5end | ||
|cluster_id=chr12:10516306..10516316,+ | |||
|coexpression_cluster_id=C812 | |||
|description=CAGE_peak_1_at_ENST00000500682_5end,CAGE_peak_1_at_uc001qya.1_5end | |description=CAGE_peak_1_at_ENST00000500682_5end,CAGE_peak_1_at_uc001qya.1_5end | ||
|id=chr12:10516306..10516316,+ | |id=chr12:10516306..10516316,+ | ||
|ontology_enrichment_celltype=CL:0000066!5.41e-15!254;CL:0002076!3.97e-10!43;CL:0000223!3.88e-09!59;CL:0002251!6.94e-07!21 | |ontology_enrichment_celltype=CL:0000066!5.41e-15!254;CL:0002076!3.97e-10!43;CL:0000223!3.88e-09!59;CL:0002251!6.94e-07!21 | ||
|ontology_enrichment_celltype_v019=CL:0002368;1.89e-13;13!CL:0002076;6.48e-13;42!CL:0002159;2.97e-10;14!CL:0000244;2.70e-09;4!CL:0000731;2.70e-09;4!CL:1000507;6.05e-08;10!CL:1000494;6.05e-08;10!CL:0002251;6.18e-08;20!CL:0002202;2.84e-07;9!CL:0002632;2.84e-07;9!CL:0002621;3.48e-07;3!CL:0002166;5.41e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,9.70e-17,42;CL:0000066,3.87e-15,253;CL:0000223,8.69e-15,58;CL:0002368,1.66e-13,13;CL:0002159,3.01e-10,14;CL:0000244,2.72e-09,4;CL:0000731,2.72e-09,4;CL:1000507,4.82e-08,10;CL:1000494,4.82e-08,10;CL:0002251,5.72e-08,20;CL:0002202,2.57e-07,9;CL:0002632,2.57e-07,9;CL:0002621,3.49e-07,3;CL:0002166,5.93e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000223;9.03e-08;58 | |||
|ontology_enrichment_disease=DOID:1749!6.33e-09!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;1.71e-09;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,1.71e-09,14 | |||
|ontology_enrichment_uberon=UBERON:0000119!5.29e-11!312;UBERON:0000483!1.38e-10!309;UBERON:0000481!6.46e-08!347;UBERON:0001008!1.76e-07!45;UBERON:0000922!2.02e-07!612;UBERON:0004119!2.17e-07!169;UBERON:0000925!2.17e-07!169;UBERON:0006595!2.17e-07!169;UBERON:0006554!3.57e-07!44;UBERON:0004111!4.22e-07!241;UBERON:0002050!5.98e-07!605;UBERON:0005423!5.98e-07!605;UBERON:0000923!8.70e-07!604;UBERON:0005291!8.70e-07!604;UBERON:0006598!8.70e-07!604;UBERON:0002532!8.70e-07!604;UBERON:0000477!9.32e-07!286 | |||
|ontology_enrichment_uberon_v019=UBERON:0000365;4.01e-11;5!UBERON:0000486;1.94e-10;12!UBERON:0006554;3.34e-09;30!UBERON:0001008;3.34e-09;30!UBERON:0005910;3.76e-09;6!UBERON:0004211;6.05e-08;10!UBERON:0009773;6.05e-08;10!UBERON:0001231;6.05e-08;10!UBERON:0004810;6.05e-08;10!UBERON:0001949;3.48e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000365,4.25e-11,5;UBERON:0005910,3.93e-09,6;UBERON:0004810,4.82e-08,10;UBERON:0004119,2.39e-07,160;UBERON:0000925,2.39e-07,160;UBERON:0006595,2.39e-07,160;UBERON:0006554,2.62e-07,47;UBERON:0001949,3.49e-07,3;UBERON:0001008,4.54e-07,48 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0.655324116390517,0.791300934685361,0.247532705920093,0.331397375727916,0.672325146451775,0.602694528023977,0.730310090387373,0.975865597581014,0.123121058076788,0,0,0,0.136874425072884,0.125542639594803,7.33568695180332,6.97855010324539,5.90330859852594,0,0,0,4.59710612239464,6.024118375565,2.9580320813343,0,0,0.293600439334847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.403213486449465,0,0.144824403882799,0,1.34140171940727,0.639312809217652,0,0,0.144846518960824,0,0,1.51255707462509,0.886917589850256,0.175669571386252,0.261958150995425,4.73583874780305,8.15725774125745,0,0,0,0,0,0,0.39752481473341,0,0.347140501607594,0,0.419499436209906,0,0.835979866147242,0,0,0,0,0,0,0,0,0.17859945656816,0,0.450445921933289,3.06633274931766,3.79706263827252,5.1296488300514,0,0,1.3082821564276,0,0,0,0,0,0,0,0.98667019366864,0,0.538842688278752,0.490385709340376,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,0,0,0.910161361938026,0,0,0.125118519871964,0,0,0,0.150238058906597,0.680593098960126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.8226077771446,10.0916064618609,11.4721838155602,0.243947412259191,0,0.232387885739037,0.518305275076852,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.8231480226628,2.94017422771084,0,0,0,0,1.47586126251736,0.686271241194102,9.98727597218493,0,3.11639814476056,0.833296006426766,0,0,0,0.34779121492523,0.939269553886573,0.144366447761074,0,0.190254152234598,0,0,0,0,0,9.3733833986777,9.40699917913613,9.07360622351273,1.43293636324557,0.581267877027924,2.68367875415648,0,0,0,0,0,0.063497894292169,0.763976851116555,0,1.71072446022705,0,0.600686115687835,0.285826432630578,0.224262168690721,0.43596006883328,0.1466765716419,1.55126058909333,0,0,0,0,0.257207374262142,0,1.0656887160644,0,0,0.823240336780769,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0.410952645100767,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0.500170521059677,0.271265023699736,0,0,0.157702415033935,0,0.601892199455438,2.27407504055985,1.03473071292505,0,0.737476674166813,0.173767228936166,0.391602314925481,0,0,0,0,0.909382714338778,0,0.30239029332968,0.496215615637554,0,0,0,0,0,0,0,0.710246901252508,0,0,0.116210378459959,0.604297247958111,69.5757451952398,1.19705285616665,0.114814448164607,0,0.262248829918848,1.80479845162965,1.15523005656622,0.784349769176855,0,4.11651352682215,0,0,0.863663664408557,0,7.04460737614017,8.52872615553251,0.509752546090077,1.66215201785745,4.47749509444357,0.438519753291869,0,0.256450125116389,0.328014645699706,0,0.103041011647722,0.183138929636687,0.082509499920588,5.74265537996172,25.3523495954243,0,0,0.154048617114644,0,0,0.429680979473094,0.145016693914229,0,0.0890320356467374,9.75181000629771,10.3782636377157,11.7403695495017,2.4277867405332,0,0,0,0,0,0,0,0,0,0.949138274156178,0.38126038784765,0,0,0,0,0.539617372749944,1.37268514868027,0.942499218765491,0,0,0,0.975267478179181,0,0,0,0.282810863907425,0,0,0,0,0,0,2.84074527747786,4.02770547529675,0.281695602532241,0.286822704408103,0.687743287091848,1.426684205925,0.354761064070598,0.211107635297664,0,0,0,6.15821521443277,6.70302275535787,5.44454924306613,0.282431402330337,22.8167847515752,37.0637246468776,10.1988935313435,17.4589784157289,0,0,0,0,0,0,0,0,0,0,8.33136734335508,0.185803175125719,0,0.426851060090485,0,2.79411120005943,0,0,0,0,0,0,5.01268954180134,0,0.321176150207399,0,0,0,0,0,0,0,0,0,4.05683517713975,0,0,0,0,0,0,0,0,0.296964680832639,0,0.994147647766298,1.1253553312841,1.8922479853894,0,14.1454023445756,0.398495976502139,0,0.251932747854276,2.96579179256249,0.861593638227486,0,0.449341755736634,0,0,0.295930216910801,0,0,0,0,0,0,0,0,1.365521379426,0,0.709163045303809,0,0,0,0,0.964771509003264,0,0.110579259931225,0,0.438770794307945,0,2.09135616417905,0.461701551022782,1.02547850262301,0,0.179515288819544,0,0,0,0,0,0.784901281975124,0.166211681900156,0.225595660617181,0,0.503464760927528,0,0.635746315921515,0,0,0.141353071433941,0.216388639742091,0,0.0884575645033392,0,14.8260564340311,17.2989514525104,20.6755460020802,1.07841812769083,0,0.702793337176017,0,1.36965233252463,0,0,2.41981432097328,0.30607276163049,0.189559738885464,1.80388103297391,8.50243169457427,0,0,0,0,0,0,0,1.37189356380129,4.35296032902013,1.04836000945218,0,0.967563312890852,0.584714536689484,0.985385484638511,0.387956065953678,4.41280633457501,0,0,0,0.949661939338181,0.586654148204409,0,0,5.19504984913539,0.288180834308212,0,0,0,0,0,0.135904206073614,0,0.203996435272644,0,1.20084057741958,1.09524303113594,0,0.429765441419957,0.262887354279314,0,0,0,0,0,0,0.134366944973453,0,1.16495949527454,0.157566364614447,0,0.202210631562555,1.27955725969173,0,0,0.817220436669454,0,0,0.415440338029185,0,0,0.303747783290123,2.68347750079413,0.551639951094387,0.262272940674991,1.05600336519407,0,0.383830394638891,0,0,0,0,0,0,0,0.246277562248017,0,0.339936274560377,0,0,0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| ||
|short_description=p1@ENST00000500682,p1@uc001qya.1 | |short_description=p1@ENST00000500682,p1@uc001qya.1 | ||
}} | }} |
Latest revision as of 04:21, 24 July 2015
Short description: | p1@ENST00000500682, p1@uc001qya.1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ENST00000500682_5end, CAGE_peak_1_at_uc001qya.1_5end |
Coexpression cluster: | C812_Prostate_Urothelial_Mallassezderived_Sebocyte_Keratinocyte_Gingival_Small |
Association with transcript: | -51bp_to_ENST00000500682, uc001qya.1_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 9.70e-17 | 42 |
epithelial cell | 3.87e-15 | 253 |
endodermal cell | 8.69e-15 | 58 |
respiratory epithelial cell | 1.66e-13 | 13 |
general ecto-epithelial cell | 3.01e-10 | 14 |
transitional epithelial cell | 2.72e-09 | 4 |
urothelial cell | 2.72e-09 | 4 |
kidney tubule cell | 4.82e-08 | 10 |
nephron tubule epithelial cell | 4.82e-08 | 10 |
epithelial cell of alimentary canal | 5.72e-08 | 20 |
epithelial cell of tracheobronchial tree | 2.57e-07 | 9 |
epithelial cell of lower respiratory tract | 2.57e-07 | 9 |
gingival epithelial cell | 3.49e-07 | 3 |
epithelial cell of Malassez | 5.93e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
urothelium | 4.25e-11 | 5 |
transitional epithelium | 3.93e-09 | 6 |
nephron tubule epithelium | 4.82e-08 | 10 |
endoderm-derived structure | 2.39e-07 | 160 |
endoderm | 2.39e-07 | 160 |
presumptive endoderm | 2.39e-07 | 160 |
urinary system structure | 2.62e-07 | 47 |
gingival epithelium | 3.49e-07 | 3 |
renal system | 4.54e-07 | 48 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 1.71e-09 | 14 |