FFCP PHASE1:Hg19::chr12:120801381..120801401,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:120801381..120801401,- | |||
|coexpression_cluster_id=C40 | |coexpression_cluster_id=C40 | ||
|description=CAGE_peak_at_chr12:120801381..120801401,- | |description=CAGE_peak_at_chr12:120801381..120801401,- | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000333!1.10e-07!41 | |ontology_enrichment_celltype=CL:0000333!1.10e-07!41 | ||
|ontology_enrichment_celltype_v019=CL:0000243;8.90e-09;15!CL:0000125;8.90e-09;15!CL:0000095;5.94e-08;17 | |ontology_enrichment_celltype_v019=CL:0000243;8.90e-09;15!CL:0000125;8.90e-09;15!CL:0000095;5.94e-08;17 | ||
|ontology_enrichment_celltype_v019_2=CL:0000243,8.90e-09,15;CL:0000125,8.90e-09,15;CL:0000030,8.90e-09,15;CL:0000339,8.90e-09,15;CL:0000095,5.94e-08,17;CL:0000123,5.94e-08,17 | |||
|ontology_enrichment_development_v019=UBERON:0003056;8.74e-45;3!UBERON:0006238;5.10e-13;10!CL:0000339;8.90e-09;15 | |ontology_enrichment_development_v019=UBERON:0003056;8.74e-45;3!UBERON:0006238;5.10e-13;10!CL:0000339;8.90e-09;15 | ||
|ontology_enrichment_disease=DOID:171!3.49e-21!10;DOID:169!3.16e-20!6;DOID:3093!1.17e-10!11;DOID:3095!8.49e-10!22;DOID:2994!8.49e-10!22;DOID:3193!7.03e-08!2;DOID:962!7.03e-08!2 | |ontology_enrichment_disease=DOID:171!3.49e-21!10;DOID:169!3.16e-20!6;DOID:3093!1.17e-10!11;DOID:3095!8.49e-10!22;DOID:2994!8.49e-10!22;DOID:3193!7.03e-08!2;DOID:962!7.03e-08!2 | ||
|ontology_enrichment_disease_v019=DOID:3093;5.08e-12;11!DOID:5409;1.57e-09;4 | |ontology_enrichment_disease_v019=DOID:3093;5.08e-12;11!DOID:5409;1.57e-09;4 | ||
|ontology_enrichment_disease_v019_2=DOID:3093,5.08e-12,11;DOID:5409,1.57e-09,4 | |||
|ontology_enrichment_uberon=UBERON:0001905!1.40e-27!2;UBERON:0002757!1.40e-27!2;UBERON:0010134!1.40e-27!2;UBERON:0002784!1.40e-27!2;UBERON:0005408!1.40e-27!2;UBERON:0001899!1.40e-27!2;UBERON:0000013!3.98e-24!5;UBERON:0002410!3.98e-24!5;UBERON:0001896!1.24e-18!3;UBERON:0005290!1.24e-18!3;UBERON:0010096!1.24e-18!3;UBERON:0000073!2.86e-18!94;UBERON:0001016!2.86e-18!94;UBERON:0003296!2.58e-14!4;UBERON:0010133!2.58e-14!4;UBERON:0002336!3.15e-14!1;UBERON:0001018!3.15e-14!1;UBERON:0002473!3.15e-14!1;UBERON:0005340!3.15e-14!1;UBERON:0002316!3.15e-14!1;UBERON:0003544!3.15e-14!1;UBERON:0001020!3.15e-14!1;UBERON:0005970!3.15e-14!1;UBERON:0002437!3.15e-14!1;UBERON:0000010!1.04e-13!8;UBERON:0000966!7.47e-12!5;UBERON:0005388!7.47e-12!5;UBERON:0001802!7.47e-12!5;UBERON:0005743!2.77e-11!86;UBERON:0000924!3.17e-11!173;UBERON:0006601!3.17e-11!173;UBERON:0000955!3.41e-11!69;UBERON:0006238!3.41e-11!69;UBERON:0002346!7.77e-11!90;UBERON:0004121!1.09e-09!169;UBERON:0001017!2.43e-09!82;UBERON:0003075!5.32e-09!86;UBERON:0007284!5.32e-09!86;UBERON:0001894!1.42e-08!7;UBERON:0006222!1.42e-08!7;UBERON:0001049!7.03e-08!57;UBERON:0005068!7.03e-08!57;UBERON:0006241!7.03e-08!57;UBERON:0007135!7.03e-08!57;UBERON:0003714!7.03e-08!2;UBERON:0001954!8.04e-08!2;UBERON:0003022!8.04e-08!2;UBERON:0002421!8.04e-08!2;UBERON:0002600!8.04e-08!2;UBERON:0005162!9.19e-08!2;UBERON:0000122!9.19e-08!2;UBERON:0000033!1.20e-07!123;UBERON:0002616!1.32e-07!59;UBERON:0002298!1.45e-07!8;UBERON:0003056!2.07e-07!61;UBERON:0000153!3.01e-07!129;UBERON:0007811!3.01e-07!129 | |ontology_enrichment_uberon=UBERON:0001905!1.40e-27!2;UBERON:0002757!1.40e-27!2;UBERON:0010134!1.40e-27!2;UBERON:0002784!1.40e-27!2;UBERON:0005408!1.40e-27!2;UBERON:0001899!1.40e-27!2;UBERON:0000013!3.98e-24!5;UBERON:0002410!3.98e-24!5;UBERON:0001896!1.24e-18!3;UBERON:0005290!1.24e-18!3;UBERON:0010096!1.24e-18!3;UBERON:0000073!2.86e-18!94;UBERON:0001016!2.86e-18!94;UBERON:0003296!2.58e-14!4;UBERON:0010133!2.58e-14!4;UBERON:0002336!3.15e-14!1;UBERON:0001018!3.15e-14!1;UBERON:0002473!3.15e-14!1;UBERON:0005340!3.15e-14!1;UBERON:0002316!3.15e-14!1;UBERON:0003544!3.15e-14!1;UBERON:0001020!3.15e-14!1;UBERON:0005970!3.15e-14!1;UBERON:0002437!3.15e-14!1;UBERON:0000010!1.04e-13!8;UBERON:0000966!7.47e-12!5;UBERON:0005388!7.47e-12!5;UBERON:0001802!7.47e-12!5;UBERON:0005743!2.77e-11!86;UBERON:0000924!3.17e-11!173;UBERON:0006601!3.17e-11!173;UBERON:0000955!3.41e-11!69;UBERON:0006238!3.41e-11!69;UBERON:0002346!7.77e-11!90;UBERON:0004121!1.09e-09!169;UBERON:0001017!2.43e-09!82;UBERON:0003075!5.32e-09!86;UBERON:0007284!5.32e-09!86;UBERON:0001894!1.42e-08!7;UBERON:0006222!1.42e-08!7;UBERON:0001049!7.03e-08!57;UBERON:0005068!7.03e-08!57;UBERON:0006241!7.03e-08!57;UBERON:0007135!7.03e-08!57;UBERON:0003714!7.03e-08!2;UBERON:0001954!8.04e-08!2;UBERON:0003022!8.04e-08!2;UBERON:0002421!8.04e-08!2;UBERON:0002600!8.04e-08!2;UBERON:0005162!9.19e-08!2;UBERON:0000122!9.19e-08!2;UBERON:0000033!1.20e-07!123;UBERON:0002616!1.32e-07!59;UBERON:0002298!1.45e-07!8;UBERON:0003056!2.07e-07!61;UBERON:0000153!3.01e-07!129;UBERON:0007811!3.01e-07!129 | ||
|ontology_enrichment_uberon_v019=UBERON:0000966;2.22e-27;5!UBERON:0005388;2.22e-27;5!UBERON:0001802;2.22e-27;5!UBERON:0001905;1.27e-17;2!UBERON:0002757;1.27e-17;2!UBERON:0010134;1.27e-17;2!UBERON:0005408;1.27e-17;2!UBERON:0001899;1.27e-17;2!UBERON:0000970;1.08e-15;20!UBERON:0002104;5.53e-15;21!UBERON:0000020;9.44e-14;23!UBERON:0001032;3.27e-13;24!UBERON:0004456;3.27e-13;24!UBERON:0003296;1.70e-09;4!UBERON:0010133;1.70e-09;4!UBERON:0002784;1.70e-09;4!UBERON:0000019;5.63e-08;19!UBERON:0000047;5.63e-08;19!UBERON:0004088;5.63e-08;19!UBERON:0010230;5.63e-08;19!UBERON:0001456;2.64e-07;21 | |ontology_enrichment_uberon_v019=UBERON:0000966;2.22e-27;5!UBERON:0005388;2.22e-27;5!UBERON:0001802;2.22e-27;5!UBERON:0001905;1.27e-17;2!UBERON:0002757;1.27e-17;2!UBERON:0010134;1.27e-17;2!UBERON:0005408;1.27e-17;2!UBERON:0001899;1.27e-17;2!UBERON:0000970;1.08e-15;20!UBERON:0002104;5.53e-15;21!UBERON:0000020;9.44e-14;23!UBERON:0001032;3.27e-13;24!UBERON:0004456;3.27e-13;24!UBERON:0003296;1.70e-09;4!UBERON:0010133;1.70e-09;4!UBERON:0002784;1.70e-09;4!UBERON:0000019;5.63e-08;19!UBERON:0000047;5.63e-08;19!UBERON:0004088;5.63e-08;19!UBERON:0010230;5.63e-08;19!UBERON:0001456;2.64e-07;21 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000966,4.86e-23,6;UBERON:0005388,4.86e-23,6;UBERON:0001802,4.86e-23,6;UBERON:0001905,1.27e-17,2;UBERON:0002757,1.27e-17,2;UBERON:0010134,1.27e-17,2;UBERON:0005408,1.27e-17,2;UBERON:0001899,1.27e-17,2;UBERON:0000970,5.40e-15,21;UBERON:0002104,5.40e-15,21;UBERON:0000020,3.20e-13,24;UBERON:0001032,3.20e-13,24;UBERON:0004456,3.20e-13,24;UBERON:0003296,1.70e-09,4;UBERON:0010133,1.70e-09,4;UBERON:0002784,1.70e-09,4;UBERON:0000019,1.25e-07,20;UBERON:0000047,1.25e-07,20;UBERON:0010312,1.25e-07,20;UBERON:0004088,1.25e-07,20;UBERON:0010230,1.25e-07,20;UBERON:0003072,1.25e-07,20;UBERON:0004128,1.25e-07,20;UBERON:0003071,1.25e-07,20;UBERON:0001456,5.09e-07,22 | |||
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|short_description=p@chr12:120801381..120801401,- | |short_description=p@chr12:120801381..120801401,- | ||
}} | }} |
Latest revision as of 05:45, 24 July 2015
Short description: | p@chr12:120801381..120801401, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:120801381..120801401, - |
Coexpression cluster: | C40_eye_retina_Lens_pineal_tongue_retinoblastoma_small |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
glial cell (sensu Vertebrata) | 8.90e-09 | 15 |
glial cell | 8.90e-09 | 15 |
glioblast | 8.90e-09 | 15 |
glioblast (sensu Vertebrata) | 8.90e-09 | 15 |
neuron associated cell | 5.94e-08 | 17 |
neuron associated cell (sensu Vertebrata) | 5.94e-08 | 17 |
Ontology term | p-value | n |
---|---|---|
retina | 4.86e-23 | 6 |
photoreceptor array | 4.86e-23 | 6 |
posterior segment of eyeball | 4.86e-23 | 6 |
pineal body | 1.27e-17 | 2 |
regional part of epithalamus | 1.27e-17 | 2 |
secretory circumventricular organ | 1.27e-17 | 2 |
circumventricular organ | 1.27e-17 | 2 |
epithalamus | 1.27e-17 | 2 |
eye | 5.40e-15 | 21 |
visual system | 5.40e-15 | 21 |
sense organ | 3.20e-13 | 24 |
sensory system | 3.20e-13 | 24 |
entire sense organ system | 3.20e-13 | 24 |
gland of diencephalon | 1.70e-09 | 4 |
neuroendocrine gland | 1.70e-09 | 4 |
regional part of diencephalon | 1.70e-09 | 4 |
camera-type eye | 1.25e-07 | 20 |
simple eye | 1.25e-07 | 20 |
immature eye | 1.25e-07 | 20 |
ocular region | 1.25e-07 | 20 |
eyeball of camera-type eye | 1.25e-07 | 20 |
optic cup | 1.25e-07 | 20 |
optic vesicle | 1.25e-07 | 20 |
eye primordium | 1.25e-07 | 20 |
face | 5.09e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
nervous system cancer | 5.08e-12 | 11 |
lung small cell carcinoma | 1.57e-09 | 4 |