FFCP PHASE1:Hg19::chr12:131200116..131200128,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:131200116..131200128,- | |||
|description=CAGE_peak_at_chr12:131200116..131200128,- | |description=CAGE_peak_at_chr12:131200116..131200128,- | ||
|id=chr12:131200116..131200128,- | |id=chr12:131200116..131200128,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000047;8.34e-18;2!CL:0000123;8.34e-18;2!CL:0000242;8.34e-18;2!CL:0000312;6.33e-08;5!CL:0000240;8.25e-07;6!CL:0000311;8.25e-07;6!CL:0000079;8.25e-07;6!CL:0000237;8.25e-07;6 | |ontology_enrichment_celltype_v019=CL:0000047;8.34e-18;2!CL:0000123;8.34e-18;2!CL:0000242;8.34e-18;2!CL:0000312;6.33e-08;5!CL:0000240;8.25e-07;6!CL:0000311;8.25e-07;6!CL:0000079;8.25e-07;6!CL:0000237;8.25e-07;6 | ||
|ontology_enrichment_celltype_v019_2=CL:0000242,7.67e-18,2;CL:0000312,6.13e-08,5;CL:0000240,8.02e-07,6;CL:0000311,8.02e-07,6;CL:0000079,8.02e-07,6;CL:0000237,8.02e-07,6;CL:0000036,8.02e-07,6;CL:0000357,8.02e-07,6;CL:0000114,8.02e-07,6 | |||
|ontology_enrichment_development_v019=UBERON:0006601;1.16e-07;82!CL:0000357;8.25e-07;6!CL:0000114;8.25e-07;6 | |ontology_enrichment_development_v019=UBERON:0006601;1.16e-07;82!CL:0000357;8.25e-07;6!CL:0000114;8.25e-07;6 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!8.86e-49!57;UBERON:0005068!8.86e-49!57;UBERON:0006241!8.86e-49!57;UBERON:0007135!8.86e-49!57;UBERON:0002780!1.18e-48!41;UBERON:0001890!1.18e-48!41;UBERON:0006240!1.18e-48!41;UBERON:0003080!2.30e-47!42;UBERON:0001017!4.70e-47!82;UBERON:0001893!2.32e-45!34;UBERON:0002020!3.61e-45!34;UBERON:0003528!3.61e-45!34;UBERON:0000073!1.65e-44!94;UBERON:0001016!1.65e-44!94;UBERON:0005743!1.69e-44!86;UBERON:0000955!1.90e-44!69;UBERON:0006238!1.90e-44!69;UBERON:0001869!3.60e-44!32;UBERON:0002616!1.24e-43!59;UBERON:0002791!1.53e-42!33;UBERON:0002346!3.81e-42!90;UBERON:0003075!3.14e-39!86;UBERON:0007284!3.14e-39!86;UBERON:0002619!2.04e-37!22;UBERON:0001950!2.42e-36!20;UBERON:0003056!3.84e-36!61;UBERON:0000956!1.28e-32!25;UBERON:0000203!1.28e-32!25;UBERON:0000033!1.47e-28!123;UBERON:0000924!1.10e-27!173;UBERON:0006601!1.10e-27!173;UBERON:0000153!7.74e-27!129;UBERON:0007811!7.74e-27!129;UBERON:0007023!1.09e-25!115;UBERON:0004121!2.03e-25!169;UBERON:0000369!3.02e-15!4;UBERON:0002435!3.02e-15!4;UBERON:0000204!3.02e-15!4;UBERON:0010082!3.02e-15!4;UBERON:0002420!1.58e-14!9;UBERON:0007245!1.58e-14!9;UBERON:0010009!1.58e-14!9;UBERON:0010011!1.58e-14!9;UBERON:0000454!1.58e-14!9;UBERON:0002308!7.86e-14!9;UBERON:0000125!7.86e-14!9;UBERON:0000349!3.23e-12!5;UBERON:0002021!4.06e-12!5;UBERON:0001872!7.36e-12!5;UBERON:0005383!8.98e-12!3;UBERON:0005382!8.98e-12!3;UBERON:0001871!1.04e-11!7;UBERON:0000988!1.48e-10!3;UBERON:0000064!2.47e-10!219;UBERON:0000025!4.83e-10!194;UBERON:0000200!6.74e-10!6;UBERON:0009663!1.02e-08!7;UBERON:0001876!1.24e-08!2;UBERON:0001873!1.39e-08!2;UBERON:0010122!1.39e-08!2;UBERON:0000475!5.23e-08!365;UBERON:0002360!1.45e-07!2;UBERON:0002148!1.45e-07!2;UBERON:0009662!1.45e-07!2;UBERON:0000094!1.45e-07!2;UBERON:0007645!1.45e-07!2;UBERON:0004111!2.22e-07!241;UBERON:0000483!6.16e-07!309;UBERON:0000477!7.85e-07!286;UBERON:0000119!8.59e-07!312;UBERON:0002298!9.03e-07!8 | |ontology_enrichment_uberon=UBERON:0001049!8.86e-49!57;UBERON:0005068!8.86e-49!57;UBERON:0006241!8.86e-49!57;UBERON:0007135!8.86e-49!57;UBERON:0002780!1.18e-48!41;UBERON:0001890!1.18e-48!41;UBERON:0006240!1.18e-48!41;UBERON:0003080!2.30e-47!42;UBERON:0001017!4.70e-47!82;UBERON:0001893!2.32e-45!34;UBERON:0002020!3.61e-45!34;UBERON:0003528!3.61e-45!34;UBERON:0000073!1.65e-44!94;UBERON:0001016!1.65e-44!94;UBERON:0005743!1.69e-44!86;UBERON:0000955!1.90e-44!69;UBERON:0006238!1.90e-44!69;UBERON:0001869!3.60e-44!32;UBERON:0002616!1.24e-43!59;UBERON:0002791!1.53e-42!33;UBERON:0002346!3.81e-42!90;UBERON:0003075!3.14e-39!86;UBERON:0007284!3.14e-39!86;UBERON:0002619!2.04e-37!22;UBERON:0001950!2.42e-36!20;UBERON:0003056!3.84e-36!61;UBERON:0000956!1.28e-32!25;UBERON:0000203!1.28e-32!25;UBERON:0000033!1.47e-28!123;UBERON:0000924!1.10e-27!173;UBERON:0006601!1.10e-27!173;UBERON:0000153!7.74e-27!129;UBERON:0007811!7.74e-27!129;UBERON:0007023!1.09e-25!115;UBERON:0004121!2.03e-25!169;UBERON:0000369!3.02e-15!4;UBERON:0002435!3.02e-15!4;UBERON:0000204!3.02e-15!4;UBERON:0010082!3.02e-15!4;UBERON:0002420!1.58e-14!9;UBERON:0007245!1.58e-14!9;UBERON:0010009!1.58e-14!9;UBERON:0010011!1.58e-14!9;UBERON:0000454!1.58e-14!9;UBERON:0002308!7.86e-14!9;UBERON:0000125!7.86e-14!9;UBERON:0000349!3.23e-12!5;UBERON:0002021!4.06e-12!5;UBERON:0001872!7.36e-12!5;UBERON:0005383!8.98e-12!3;UBERON:0005382!8.98e-12!3;UBERON:0001871!1.04e-11!7;UBERON:0000988!1.48e-10!3;UBERON:0000064!2.47e-10!219;UBERON:0000025!4.83e-10!194;UBERON:0000200!6.74e-10!6;UBERON:0009663!1.02e-08!7;UBERON:0001876!1.24e-08!2;UBERON:0001873!1.39e-08!2;UBERON:0010122!1.39e-08!2;UBERON:0000475!5.23e-08!365;UBERON:0002360!1.45e-07!2;UBERON:0002148!1.45e-07!2;UBERON:0009662!1.45e-07!2;UBERON:0000094!1.45e-07!2;UBERON:0007645!1.45e-07!2;UBERON:0004111!2.22e-07!241;UBERON:0000483!6.16e-07!309;UBERON:0000477!7.85e-07!286;UBERON:0000119!8.59e-07!312;UBERON:0002298!9.03e-07!8 | ||
|ontology_enrichment_uberon_v019=UBERON:0001871;7.84e-20;6!UBERON:0001876;8.34e-18;2!UBERON:0001950;6.69e-15;20!UBERON:0002619;1.12e-13;22!UBERON:0000956;3.44e-12;25!UBERON:0000203;3.44e-12;25!UBERON:0001893;3.90e-10;34!UBERON:0002791;1.32e-09;32!UBERON:0001869;1.32e-09;32!UBERON:0003528;4.49e-09;34!UBERON:0002020;4.49e-09;34!UBERON:0002021;6.33e-08;5!UBERON:0000349;6.33e-08;5!UBERON:0001016;9.93e-07;83 | |ontology_enrichment_uberon_v019=UBERON:0001871;7.84e-20;6!UBERON:0001876;8.34e-18;2!UBERON:0001950;6.69e-15;20!UBERON:0002619;1.12e-13;22!UBERON:0000956;3.44e-12;25!UBERON:0000203;3.44e-12;25!UBERON:0001893;3.90e-10;34!UBERON:0002791;1.32e-09;32!UBERON:0001869;1.32e-09;32!UBERON:0003528;4.49e-09;34!UBERON:0002020;4.49e-09;34!UBERON:0002021;6.33e-08;5!UBERON:0000349;6.33e-08;5!UBERON:0001016;9.93e-07;83 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001871,8.62e-20,6;UBERON:0001876,6.48e-18,2;UBERON:0001950,7.18e-15,20;UBERON:0002619,1.20e-13,22;UBERON:0000956,3.64e-12,25;UBERON:0000203,3.64e-12,25;UBERON:0001017,2.13e-10,81;UBERON:0002791,9.60e-10,32;UBERON:0001869,9.60e-10,32;UBERON:0001016,2.02e-09,89;UBERON:0003528,3.15e-09,34;UBERON:0002020,3.15e-09,34;UBERON:0001893,3.15e-09,34;UBERON:0000955,4.07e-08,68;UBERON:0006238,4.07e-08,68;UBERON:0000349,5.73e-08,5;UBERON:0002021,6.55e-08,5;UBERON:0002780,8.32e-08,41;UBERON:0001890,8.32e-08,41;UBERON:0003080,8.32e-08,41;UBERON:0006240,8.32e-08,41;UBERON:0004121,3.21e-07,171;UBERON:0000924,3.21e-07,171;UBERON:0006601,3.21e-07,171 | |||
|phase1_expression=0,0,0,0,0.446961094427288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.0654895377488563,0,0,0.324547393654683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30139853857622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.9882952955326,0.422008249231538,0,0,0,0,0,0.251932747854276,0,0,0,0,0,0,0,0,0,0,0.371072392647405,1.99613798001194,0,0,0,0,0,0,0.344743373241465,0.291604613383254,0,0.885741385813839,0.482385754501632,0,0,0,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0,0,0,0.134802265961354,0,0.468528891450678,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0846733320657845,0,0.272406812223151,0,0,0,0,0,0.607495566580247,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157054096250234,0,0.854183854313742,0.3755727921195,0,0,0.124192805882767,0,0,0,0,0,0,1.59413131471908,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255788742607303,0,0,0.109209638192014,0,0.212574920101683,0,0,0,0,0,0,0,0.642292250964595,1.41696576325585,0.159633859057151,0,0.504143392443436,0.622415272177961,0.484426936895553,0,0,0,0.183428598521679,0,0,0,0,0,0,0,0,0,0,0.337687923091973,0,0.413373593002368,0.380494861163441,0.546974809018219,0,0,0.175871244359621,0,0,0,0,0.91064876540519,0,0,0,0.135939465953663,0.263091094251396,0,0,0,0.314231179832004,0,0,0,0,0,0.158013611732727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11294608203896,0,0,0,0,0,0,0,0.196308467114945,0,0,0,0,0,0.0999411559249289,0,0,0,0,0,0,0,1.22384682343646,0,0,0,0,0,0,0,0.126698501011437,0,0,0,0,0,0,0.829169439458779,0,0,0,0,0,0,0,0,0,0,0,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0.446961094427288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.0654895377488563,0,0,0.324547393654683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30139853857622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.9882952955326,0.422008249231538,0,0,0,0,0,0.251932747854276,0,0,0,0,0,0,0,0,0,0,0.371072392647405,1.99613798001194,0,0,0,0,0,0,0.344743373241465,0.291604613383254,0,0.885741385813839,0.482385754501632,0,0,0,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0,0,0,0.134802265961354,0,0.468528891450678,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0846733320657845,0,0.272406812223151,0,0,0,0,0,0.607495566580247,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157054096250234,0,0.854183854313742,0.3755727921195,0,0,0.124192805882767,0,0,0,0,0,0,1.59413131471908,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255788742607303,0,0,0.109209638192014,0,0.212574920101683,0,0,0,0,0,0,0,0.642292250964595,1.41696576325585,0.159633859057151,0,0.504143392443436,0.622415272177961,0.484426936895553,0,0,0,0.183428598521679,0,0,0,0,0,0,0,0,0,0,0.337687923091973,0,0.413373593002368,0.380494861163441,0.546974809018219,0,0,0.175871244359621,0,0,0,0,0.91064876540519,0,0,0,0.135939465953663,0.263091094251396,0,0,0,0.314231179832004,0,0,0,0,0,0.158013611732727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11294608203896,0,0,0,0,0,0,0,0.196308467114945,0,0,0,0,0,0.0999411559249289,0,0,0,0,0,0,0,1.22384682343646,0,0,0,0,0,0,0,0.126698501011437,0,0,0,0,0,0,0.829169439458779,0,0,0,0,0,0,0,0,0,0,0,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr12:131200116..131200128,- | |short_description=p@chr12:131200116..131200128,- | ||
}} | }} |
Latest revision as of 06:46, 24 July 2015
Short description: | p@chr12:131200116..131200128, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:131200116..131200128, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 7.67e-18 | 2 |
keratinocyte | 6.13e-08 | 5 |
stratified squamous epithelial cell | 8.02e-07 | 6 |
keratin accumulating cell | 8.02e-07 | 6 |
stratified epithelial cell | 8.02e-07 | 6 |
keratinizing barrier epithelial cell | 8.02e-07 | 6 |
epithelial fate stem cell | 8.02e-07 | 6 |
stratified epithelial stem cell | 8.02e-07 | 6 |
surface ectodermal cell | 8.02e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
temporal lobe | 8.62e-20 | 6 |
amygdala | 6.48e-18 | 2 |
neocortex | 7.18e-15 | 20 |
regional part of cerebral cortex | 1.20e-13 | 22 |
cerebral cortex | 3.64e-12 | 25 |
pallium | 3.64e-12 | 25 |
central nervous system | 2.13e-10 | 81 |
regional part of telencephalon | 9.60e-10 | 32 |
cerebral hemisphere | 9.60e-10 | 32 |
nervous system | 2.02e-09 | 89 |
brain grey matter | 3.15e-09 | 34 |
gray matter | 3.15e-09 | 34 |
telencephalon | 3.15e-09 | 34 |
brain | 4.07e-08 | 68 |
future brain | 4.07e-08 | 68 |
limbic system | 5.73e-08 | 5 |
occipital lobe | 6.55e-08 | 5 |
regional part of forebrain | 8.32e-08 | 41 |
forebrain | 8.32e-08 | 41 |
anterior neural tube | 8.32e-08 | 41 |
future forebrain | 8.32e-08 | 41 |
ectoderm-derived structure | 3.21e-07 | 171 |
ectoderm | 3.21e-07 | 171 |
presumptive ectoderm | 3.21e-07 | 171 |