FFCP PHASE1:Hg19::chr12:3475309..3475320,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr12:3475309..3475320,- to FFCP PHASE1:Hg19::chr12:3475309..3475320,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr12:3475309..3475320,- | |||
|description=CAGE_peak_at_chr12:3475309..3475320,- | |||
|id=chr12:3475309..3475320,- | |||
|ontology_enrichment_celltype=CL:0000082!2.05e-08!19;CL:0002322!4.00e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:0000322;1.55e-09;3!CL:0000082;2.43e-08;19!CL:0002553;4.56e-08;1!CL:0000167;6.35e-08;1!CL:0000164;6.35e-08;1!CL:0000502;6.35e-08;1!CL:0000172;6.35e-08;1!CL:0000173;6.35e-08;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000322,1.66e-09,3;CL:0000082,2.72e-08,19;CL:0002553,4.57e-08,1;CL:0000167,5.96e-08,1;CL:0000164,5.96e-08,1;CL:0000502,5.96e-08,1;CL:0000172,5.96e-08,1;CL:0000173,5.96e-08,1;CL:0002351,5.96e-08,1 | |||
|ontology_enrichment_development_v019=CL:0002351;6.35e-08;1 | |||
|ontology_enrichment_disease=DOID:0050687!1.44e-13!143;DOID:1325!1.12e-11!7;DOID:3904!1.12e-11!7;DOID:305!1.29e-11!106;DOID:0050615!7.80e-11!16;DOID:1324!1.81e-09!15;DOID:3905!1.01e-08!9;DOID:171!5.73e-08!10;DOID:1749!9.18e-08!14;DOID:5409!2.04e-07!4 | |||
|ontology_enrichment_disease_v019=DOID:171;1.05e-15;10!DOID:1325;6.53e-15;7!DOID:3904;6.53e-15;7!DOID:0050615;5.79e-14;16!DOID:3910;7.34e-14;2!DOID:3905;1.25e-11;9!DOID:1324;1.24e-10;15!DOID:169;4.74e-10;6!DOID:4430;6.35e-08;1!DOID:0050619;1.58e-07;1!DOID:3151;1.58e-07;1!DOID:1357;1.58e-07;1!DOID:3149;1.58e-07;1!DOID:5409;2.35e-07;4!DOID:3095;5.13e-07;22!DOID:2994;5.13e-07;22 | |||
|ontology_enrichment_disease_v019_2=DOID:171,1.48e-15,10;DOID:1325,8.44e-15,7;DOID:3904,8.44e-15,7;DOID:0050615,5.43e-14,16;DOID:3910,8.12e-14,2;DOID:3905,1.52e-11,9;DOID:1324,1.44e-10,15;DOID:169,5.22e-10,6;DOID:0050687,4.53e-08,143;DOID:4430,5.96e-08,1;DOID:0050619,8.28e-08,1;DOID:1357,8.28e-08,1;DOID:3151,9.44e-08,1;DOID:3149,9.44e-08,1;DOID:5409,2.80e-07,4;DOID:3095,5.94e-07,22;DOID:2994,5.94e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0001950!2.43e-20!20;UBERON:0002619!4.26e-20!22;UBERON:0001893!1.70e-19!34;UBERON:0001869!1.92e-19!32;UBERON:0000073!7.01e-19!94;UBERON:0001016!7.01e-19!94;UBERON:0001017!1.41e-18!82;UBERON:0005743!2.78e-18!86;UBERON:0002791!3.18e-18!33;UBERON:0001049!7.60e-18!57;UBERON:0005068!7.60e-18!57;UBERON:0006241!7.60e-18!57;UBERON:0007135!7.60e-18!57;UBERON:0000956!4.10e-17!25;UBERON:0000203!4.10e-17!25;UBERON:0000955!1.64e-16!69;UBERON:0006238!1.64e-16!69;UBERON:0002780!1.70e-16!41;UBERON:0001890!1.70e-16!41;UBERON:0006240!1.70e-16!41;UBERON:0002020!5.04e-16!34;UBERON:0003528!5.04e-16!34;UBERON:0003080!6.13e-16!42;UBERON:0002616!1.23e-15!59;UBERON:0002346!2.32e-15!90;UBERON:0000924!4.19e-14!173;UBERON:0006601!4.19e-14!173;UBERON:0003075!4.12e-13!86;UBERON:0007284!4.12e-13!86;UBERON:0004121!2.61e-12!169;UBERON:0003056!1.05e-10!61;UBERON:0000200!2.26e-10!6;UBERON:0007023!6.22e-10!115;UBERON:0000033!6.34e-10!123;UBERON:0000153!1.13e-09!129;UBERON:0007811!1.13e-09!129;UBERON:0004802!2.05e-08!19;UBERON:0000115!2.05e-08!19;UBERON:0005153!3.30e-07!37;UBERON:0001871!4.36e-07!7;UBERON:0002048!6.65e-07!22;UBERON:0000117!6.65e-07!22;UBERON:0000171!6.65e-07!22;UBERON:0000170!6.65e-07!22;UBERON:0005597!6.65e-07!22;UBERON:0000118!6.65e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0001950;1.58e-22;20!UBERON:0002619;1.91e-20;22!UBERON:0000956;6.37e-18;25!UBERON:0000203;6.37e-18;25!UBERON:0001869;8.31e-15;32!UBERON:0001893;3.89e-14;34!UBERON:0004903;7.34e-14;2!UBERON:0002173;7.34e-14;2!UBERON:0002186;7.34e-14;2!UBERON:0002791;2.99e-12;32!UBERON:0002021;5.82e-12;5!UBERON:0001872;9.81e-12;5!UBERON:0003528;8.97e-11;34!UBERON:0002020;8.97e-11;34!UBERON:0004821;1.55e-09;3!UBERON:0007499;1.55e-09;3!UBERON:0003215;1.55e-09;3!UBERON:0010368;1.55e-09;3!UBERON:0009911;1.55e-09;3!UBERON:0002299;1.55e-09;3!UBERON:0006524;1.55e-09;3!UBERON:0008874;1.55e-09;3!UBERON:0002169;1.55e-09;3!UBERON:0004894;1.55e-09;3!UBERON:0002780;2.25e-09;41!UBERON:0001890;2.25e-09;41!UBERON:0004802;2.43e-08;19!UBERON:0000115;2.43e-08;19!UBERON:0002902;6.35e-08;1!UBERON:0009899;6.35e-08;1!UBERON:0002581;1.58e-07;1!UBERON:0002022;1.58e-07;1!UBERON:0001764;1.58e-07;1!UBERON:0001825;1.58e-07;1!UBERON:0007190;1.58e-07;1!UBERON:0009856;2.35e-07;4!UBERON:0002346;2.63e-07;4!UBERON:0000923;2.63e-07;4!UBERON:0010316;2.63e-07;4!UBERON:0005291;2.63e-07;4!UBERON:0002048;3.63e-07;22!UBERON:0004807;3.63e-07;22!UBERON:0000117;3.63e-07;22!UBERON:0000171;3.63e-07;22!UBERON:0000170;3.63e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001950,1.44e-22,20;UBERON:0002619,1.75e-20,22;UBERON:0000956,5.90e-18,25;UBERON:0000203,5.90e-18,25;UBERON:0001869,4.72e-17,32;UBERON:0001893,5.57e-16,34;UBERON:0002791,7.64e-14,32;UBERON:0004903,8.12e-14,2;UBERON:0002173,8.12e-14,2;UBERON:0002186,8.12e-14,2;UBERON:0002780,4.95e-13,41;UBERON:0001890,4.95e-13,41;UBERON:0003080,4.95e-13,41;UBERON:0006240,4.95e-13,41;UBERON:0003528,5.70e-13,34;UBERON:0002020,5.70e-13,34;UBERON:0002021,5.03e-12,5;UBERON:0001872,6.07e-12,5;UBERON:0000073,9.31e-10,53;UBERON:0002616,9.31e-10,53;UBERON:0004821,1.66e-09,3;UBERON:0003215,1.66e-09,3;UBERON:0010368,1.66e-09,3;UBERON:0009911,1.66e-09,3;UBERON:0002299,1.66e-09,3;UBERON:0006524,1.66e-09,3;UBERON:0008874,1.66e-09,3;UBERON:0002169,1.66e-09,3;UBERON:0004894,1.66e-09,3;UBERON:0001049,3.73e-09,56;UBERON:0005068,3.73e-09,56;UBERON:0006241,3.73e-09,56;UBERON:0007135,3.73e-09,56;UBERON:0001016,7.99e-09,89;UBERON:0000955,1.05e-08,68;UBERON:0006238,1.05e-08,68;UBERON:0004802,2.72e-08,19;UBERON:0000115,2.72e-08,19;UBERON:0003056,2.79e-08,61;UBERON:0002346,5.23e-08,86;UBERON:0002902,6.80e-08,1;UBERON:0009899,6.80e-08,1;UBERON:0004121,6.92e-08,171;UBERON:0000924,6.92e-08,171;UBERON:0006601,6.92e-08,171;UBERON:0001764,8.28e-08,1;UBERON:0001825,8.28e-08,1;UBERON:0002581,8.84e-08,1;UBERON:0002022,1.07e-07,1;UBERON:0007190,2.47e-07,1;UBERON:0002048,3.99e-07,22;UBERON:0000117,3.99e-07,22;UBERON:0000171,3.99e-07,22;UBERON:0000170,3.99e-07,22;UBERON:0005597,3.99e-07,22;UBERON:0000118,3.99e-07,22;UBERON:0001017,4.85e-07,81 | |||
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| ||
|short_description=p@chr12:3475309..3475320,- | |||
}} | }} |
Latest revision as of 08:16, 24 July 2015
Short description: | p@chr12:3475309..3475320, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:3475309..3475320, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pneumocyte | 1.66e-09 | 3 |
epithelial cell of lung | 2.72e-08 | 19 |
lung fibroblast | 4.57e-08 | 1 |
peptide hormone secreting cell | 5.96e-08 | 1 |
enteroendocrine cell | 5.96e-08 | 1 |
type D enteroendocrine cell | 5.96e-08 | 1 |
somatostatin secreting cell | 5.96e-08 | 1 |
pancreatic D cell | 5.96e-08 | 1 |
progenitor cell of endocrine pancreas | 5.96e-08 | 1 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 1.48e-15 | 10 |
bronchus cancer | 8.44e-15 | 7 |
bronchogenic carcinoma | 8.44e-15 | 7 |
respiratory system cancer | 5.43e-14 | 16 |
lung adenocarcinoma | 8.12e-14 | 2 |
lung carcinoma | 1.52e-11 | 9 |
lung cancer | 1.44e-10 | 15 |
neuroendocrine tumor | 5.22e-10 | 6 |
cell type cancer | 4.53e-08 | 143 |
somatostatinoma | 5.96e-08 | 1 |
paranasal sinus cancer | 8.28e-08 | 1 |
maxillary sinus cancer | 8.28e-08 | 1 |
skin squamous cell carcinoma | 9.44e-08 | 1 |
keratoacanthoma | 9.44e-08 | 1 |
lung small cell carcinoma | 2.80e-07 | 4 |
germ cell and embryonal cancer | 5.94e-07 | 22 |
germ cell cancer | 5.94e-07 | 22 |