FFCP PHASE1:Hg19::chr13:52555605..52555624,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr13:52555605..52555624,- | |||
|coexpression_cluster_id=C84 | |||
|description=CAGE_peak_at_chr13:52555605..52555624,- | |description=CAGE_peak_at_chr13:52555605..52555624,- | ||
|id=chr13:52555605..52555624,- | |id=chr13:52555605..52555624,- | ||
|ontology_enrichment_celltype=CL:0000077!1.32e-09!19 | |ontology_enrichment_celltype=CL:0000077!1.32e-09!19 | ||
|ontology_enrichment_celltype_v019=CL:0002541;4.30e-16;3!CL:0000039;3.52e-15;7!CL:0000586;3.52e-15;7!CL:0000077;1.68e-14;19!CL:0002563;6.92e-12;4!CL:0002097;4.83e-07;2!CL:0002253;8.06e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002541,3.98e-16,3;CL:0000039,3.61e-15,7;CL:0000586,3.61e-15,7;CL:0000077,1.55e-14,19;CL:0002563,6.37e-12,4;CL:0002097,4.83e-07,2;CL:0002253,7.61e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0004140;2.20e-12;1!UBERON:0005425;3.64e-12;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:1799;1.25e-12;1!DOID:10165;1.25e-12;1!DOID:1798;1.25e-12;1!DOID:170;1.61e-08;6 | |||
|ontology_enrichment_disease_v019_2=DOID:1799,1.25e-12,1;DOID:10165,1.25e-12,1;DOID:1798,1.25e-12,1;DOID:170,1.61e-08,6 | |||
|ontology_enrichment_uberon=UBERON:0005631!5.77e-10!14;UBERON:0000158!5.77e-10!14;UBERON:0004923!4.76e-09!57 | |||
|ontology_enrichment_uberon_v019=UBERON:0003124;4.30e-16;3!UBERON:0000920;4.30e-16;3!UBERON:0000941;3.64e-12;1!UBERON:0001785;3.64e-12;1!UBERON:0002464;3.64e-12;1!UBERON:0004904;3.64e-12;1!UBERON:0001021;3.64e-12;1!UBERON:0001242;6.92e-12;4!UBERON:0001262;6.92e-12;4!UBERON:0004786;6.92e-12;4!UBERON:0004808;6.92e-12;4!UBERON:0001277;6.92e-12;4!UBERON:0005631;9.70e-11;10!UBERON:0000158;9.70e-11;10!UBERON:0000485;3.62e-07;7!UBERON:0003929;3.62e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000920,3.98e-16,3;UBERON:0000941,3.85e-12,1;UBERON:0001785,3.85e-12,1;UBERON:0002464,3.85e-12,1;UBERON:0004904,3.85e-12,1;UBERON:0001021,3.85e-12,1;UBERON:0003902,3.85e-12,1;UBERON:0005425,3.85e-12,1;UBERON:0001242,6.37e-12,4;UBERON:0001262,6.37e-12,4;UBERON:0004786,6.37e-12,4;UBERON:0004808,6.37e-12,4;UBERON:0001277,6.37e-12,4;UBERON:0005631,7.85e-08,14;UBERON:0000158,7.85e-08,14;UBERON:0004923,1.51e-07,66;UBERON:0003124,2.02e-07,7 | |||
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|phase1_expression=0.363356758541113,0,0,1.0007329835313,0.446961094427288,0,0,0,0,0,0,0.218441372130172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.529636723252875,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300091096084402,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.47586126251736,0.171567810298526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.71295439353627,0,4.09889263846434,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.362578348774867,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328014645699706,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0.0890320356467374,0,0,0,0,0,0.31481234683064,0,0,0.532306030317022,0,0,0,0,0.316379424718726,0,0,0,0.318203247925937,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438450885253763,0,0,0,0,0,0,0.196498082026242,0.35667105148125,0,0,0,0,0,0,0,0,0.470719003883896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.71623345421307,3.26661148915902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.7640976097015,3.2312751987518,22.1640638720896,6.69902435437031,0,4.79731298416771,0,0,0,0,0,0,0,0,0,0,2.82706142867882,0,0,0,0,0,0,0,0,0.802577647298789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0.229160424011684,0,0.199679000498991,0,0,2.21705459206197,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.25426853765475,0,0,0,0,0.082092520749339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14241563650639,0.406870733204662,0,0,0,0,0,0,0,0,0,7.71989728949733,0,0,0,0,0,1.54400723580486,1.53498834705095,0,0.192914038270915,0,0,0.345430341731199,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252071696221718,0,0,1.42769420259154,0,0,0,0,0,0,0,0,0,0,4.19050711170276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.443511850813194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr13:52555605..52555624,- | |short_description=p@chr13:52555605..52555624,- | ||
}} | }} |
Latest revision as of 16:47, 24 July 2015
Short description: | p@chr13:52555605..52555624, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr13:52555605..52555624, - |
Coexpression cluster: | C84_choriocarcinoma_pancreatic_Wilms_Mallassezderived_thymus_salivary_colon |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chorionic membrane mesenchymal stem cell | 3.98e-16 | 3 |
germ line cell | 3.61e-15 | 7 |
germ cell | 3.61e-15 | 7 |
mesothelial cell | 1.55e-14 | 19 |
intestinal epithelial cell | 6.37e-12 | 4 |
cortical cell of adrenal gland | 4.83e-07 | 2 |
epithelial cell of large intestine | 7.61e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
egg chorion | 3.98e-16 | 3 |
cranial nerve II | 3.85e-12 | 1 |
cranial nerve | 3.85e-12 | 1 |
nerve trunk | 3.85e-12 | 1 |
nerve connecting eye with brain | 3.85e-12 | 1 |
nerve | 3.85e-12 | 1 |
retinal neural layer | 3.85e-12 | 1 |
presumptive neural retina | 3.85e-12 | 1 |
intestinal mucosa | 6.37e-12 | 4 |
wall of intestine | 6.37e-12 | 4 |
gastrointestinal system mucosa | 6.37e-12 | 4 |
gastrointestinal system epithelium | 6.37e-12 | 4 |
intestinal epithelium | 6.37e-12 | 4 |
extraembryonic membrane | 7.85e-08 | 14 |
membranous layer | 7.85e-08 | 14 |
organ component layer | 1.51e-07 | 66 |
chorion | 2.02e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
islet cell tumor | 1.25e-12 | 1 |
endocrine pancreas cancer | 1.25e-12 | 1 |
pancreatic endocrine carcinoma | 1.25e-12 | 1 |
endocrine gland cancer | 1.61e-08 | 6 |