FFCP PHASE1:Hg19::chr13:97775142..97775154,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr13:97775142..97775154,+ | |||
|coexpression_cluster_id=C164 | |coexpression_cluster_id=C164 | ||
|description=CAGE_peak_at_chr13:97775142..97775154,+ | |description=CAGE_peak_at_chr13:97775142..97775154,+ | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000077!7.21e-17!19;CL:0000174!1.02e-13!3;CL:0000076!6.00e-12!62;CL:0002097!1.33e-09!2;CL:0002586!5.98e-07!3 | |ontology_enrichment_celltype=CL:0000077!7.21e-17!19;CL:0000174!1.02e-13!3;CL:0000076!6.00e-12!62;CL:0002097!1.33e-09!2;CL:0002586!5.98e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0002568;5.12e-50;1!CL:0002178;6.76e-18;3!CL:0002586;8.00e-18;3!CL:0000149;1.00e-13;4!CL:0002569;1.50e-09;6 | |ontology_enrichment_celltype_v019=CL:0002568;5.12e-50;1!CL:0002178;6.76e-18;3!CL:0002586;8.00e-18;3!CL:0000149;1.00e-13;4!CL:0002569;1.50e-09;6 | ||
|ontology_enrichment_celltype_v019_2=CL:0002568,3.99e-50,1;CL:0002178,6.76e-18,3;CL:0002586,8.00e-18,3;CL:0000149,1.00e-13,4;CL:0002569,1.44e-09,6 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:1749!4.17e-10!14;DOID:305!1.91e-07!106;DOID:170!6.73e-07!6 | |ontology_enrichment_disease=DOID:1749!4.17e-10!14;DOID:305!1.91e-07!106;DOID:170!6.73e-07!6 | ||
|ontology_enrichment_disease_v019=DOID:3493;4.32e-26;2 | |ontology_enrichment_disease_v019=DOID:3493;4.32e-26;2 | ||
|ontology_enrichment_disease_v019_2=DOID:3493,4.32e-26,2 | |||
|ontology_enrichment_uberon=UBERON:0003343!9.74e-10!4;UBERON:0004785!9.74e-10!4;UBERON:0002394!1.00e-09!4;UBERON:0003928!1.00e-09!4;UBERON:0003729!7.03e-08!5;UBERON:0001781!5.98e-07!3;UBERON:0001782!5.98e-07!3;UBERON:0005424!5.98e-07!3 | |ontology_enrichment_uberon=UBERON:0003343!9.74e-10!4;UBERON:0004785!9.74e-10!4;UBERON:0002394!1.00e-09!4;UBERON:0003928!1.00e-09!4;UBERON:0003729!7.03e-08!5;UBERON:0001781!5.98e-07!3;UBERON:0001782!5.98e-07!3;UBERON:0005424!5.98e-07!3 | ||
|ontology_enrichment_uberon_v019=UBERON:0001781;8.00e-18;3!UBERON:0001782;8.00e-18;3!UBERON:0000945;2.66e-11;5!UBERON:0010039;2.66e-11;5!UBERON:0000966;2.94e-11;5!UBERON:0005388;2.94e-11;5!UBERON:0001802;2.94e-11;5!UBERON:0003422;1.50e-09;6!UBERON:0003104;2.26e-08;7!UBERON:0009142;2.26e-08;7 | |ontology_enrichment_uberon_v019=UBERON:0001781;8.00e-18;3!UBERON:0001782;8.00e-18;3!UBERON:0000945;2.66e-11;5!UBERON:0010039;2.66e-11;5!UBERON:0000966;2.94e-11;5!UBERON:0005388;2.94e-11;5!UBERON:0001802;2.94e-11;5!UBERON:0003422;1.50e-09;6!UBERON:0003104;2.26e-08;7!UBERON:0009142;2.26e-08;7 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001782,8.00e-18,3;UBERON:0005424,8.00e-18,3;UBERON:0001781,1.00e-13,4;UBERON:0000966,1.32e-09,6;UBERON:0005388,1.32e-09,6;UBERON:0001802,1.32e-09,6;UBERON:0003422,1.44e-09,6;UBERON:0000945,1.49e-07,8;UBERON:0010039,1.49e-07,8 | |||
|phase1_expression=0.726713517082227,0,0.563817616383885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32592226663359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.55126058909333,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20575750823834,0,0.199945982364114,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.744323423456331,0,0,0.256278298511402,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328014645699706,2.60302715731442,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35667105148125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307160702099232,0,0.562677665642051,0,0,0,0,0,0,0,0,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361789315876224,0,0,0,0,0,0,0,0.113942055847001,0,0,0,0.31900115973192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0870592065804026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135904206073614,0.104602846312333,0,0,0,0,0,0.429765441419957,0.262887354279314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.380805212168795,0,0,0.107410557042488,0,0,0,0,0,0,0.385239660814607,0.214441591374926,0,0.453411851024545,0.463044948647668,0,0.358177682162975,0,0.219284049578707,0,0.192914038270915,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.80057074828547,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,0,0.183428598521679,0.231051332300676,0,0,0,0,0,0,0,0,0.295712172434091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118193840883968,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.95016892283468,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.240724100067505,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0814032686109745,0,0,0,0,0,0,0,0,0 | |phase1_expression=0.726713517082227,0,0.563817616383885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32592226663359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.55126058909333,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20575750823834,0,0.199945982364114,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.744323423456331,0,0,0.256278298511402,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328014645699706,2.60302715731442,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35667105148125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307160702099232,0,0.562677665642051,0,0,0,0,0,0,0,0,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361789315876224,0,0,0,0,0,0,0,0.113942055847001,0,0,0,0.31900115973192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0870592065804026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135904206073614,0.104602846312333,0,0,0,0,0,0.429765441419957,0.262887354279314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.380805212168795,0,0,0.107410557042488,0,0,0,0,0,0,0.385239660814607,0.214441591374926,0,0.453411851024545,0.463044948647668,0,0.358177682162975,0,0.219284049578707,0,0.192914038270915,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.80057074828547,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,0,0.183428598521679,0.231051332300676,0,0,0,0,0,0,0,0,0.295712172434091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118193840883968,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.95016892283468,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.240724100067505,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0814032686109745,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr13:97775142..97775154,+ | |short_description=p@chr13:97775142..97775154,+ | ||
}} | }} |
Latest revision as of 17:35, 24 July 2015
Short description: | p@chr13:97775142..97775154, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr13:97775142..97775154, + |
Coexpression cluster: | C164_signet_corpus_optic_mucinous_substantia_salivary_choriocarcinoma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesenchymal stem cell of Wharton's jelly | 3.99e-50 | 1 |
epithelial cell of stomach | 6.76e-18 | 3 |
retinal pigment epithelial cell | 8.00e-18 | 3 |
visual pigment cell | 1.00e-13 | 4 |
mesenchymal stem cell of umbilical cord | 1.44e-09 | 6 |
Ontology term | p-value | n |
---|---|---|
pigmented layer of retina | 8.00e-18 | 3 |
presumptive retinal pigmented epithelium | 8.00e-18 | 3 |
layer of retina | 1.00e-13 | 4 |
retina | 1.32e-09 | 6 |
photoreceptor array | 1.32e-09 | 6 |
posterior segment of eyeball | 1.32e-09 | 6 |
mesenchyme of umbilical cord | 1.44e-09 | 6 |
stomach | 1.49e-07 | 8 |
food storage organ | 1.49e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
signet ring cell adenocarcinoma | 4.32e-26 | 2 |