FFCP PHASE1:Hg19::chr18:21487788..21487807,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr18:21487788..21487807,+ to FFCP PHASE1:Hg19::chr18:21487788..21487807,+: NSchange) |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr18:21487788..21487807,+ | |||
|coexpression_cluster_id=C363 | |||
|description=CAGE_peak_at_chr18:21487788..21487807,+ | |||
|id=chr18:21487788..21487807,+ | |||
|ontology_enrichment_celltype=CL:0002076!1.78e-30!43;CL:0000223!2.26e-20!59;CL:0000066!5.09e-19!254;CL:0002251!9.97e-19!21;CL:0002159!3.26e-10!13;CL:0002621!8.34e-10!3;CL:0002368!8.42e-10!13;CL:0002541!1.84e-09!3;CL:0000240!4.69e-08!6;CL:0000311!4.69e-08!6;CL:0000079!4.69e-08!6;CL:0000237!4.69e-08!6;CL:0000036!4.69e-08!6;CL:0000357!4.69e-08!6;CL:0000114!4.69e-08!6;CL:0002327!2.09e-07!4;CL:0000244!7.91e-07!4;CL:0000731!7.91e-07!4 | |||
|ontology_enrichment_celltype_v019=CL:0002621;2.96e-23;3!CL:0000240;6.93e-20;6!CL:0000311;6.93e-20;6!CL:0000079;6.93e-20;6!CL:0000237;6.93e-20;6!CL:0002159;7.87e-19;14!CL:0002327;2.42e-17;4!CL:0002076;2.88e-17;42!CL:0000312;6.37e-14;5!CL:0000362;2.47e-13;9!CL:0002166;2.29e-11;3!CL:0002541;2.74e-11;3!CL:0002231;4.65e-11;3!CL:0000349;1.12e-09;19!CL:0002368;2.79e-09;13!CL:0002251;3.69e-09;20!CL:0002336;1.22e-08;1!CL:0002261;1.22e-08;1!CL:0002170;1.22e-08;1!CL:0002077;7.51e-07;34!CL:0000622;9.44e-07;5!CL:0002537;9.44e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002621,2.28e-23,3;CL:0000240,8.68e-20,6;CL:0000311,8.68e-20,6;CL:0000079,8.68e-20,6;CL:0000237,8.68e-20,6;CL:0000036,8.68e-20,6;CL:0000357,8.68e-20,6;CL:0000114,8.68e-20,6;CL:0002076,2.34e-19,42;CL:0002159,7.07e-19,14;CL:0002327,1.24e-17,4;CL:0000312,7.45e-14,5;CL:0000223,1.69e-13,58;CL:0000362,2.21e-13,9;CL:0000066,1.91e-11,253;CL:0002166,2.29e-11,3;CL:0002541,2.54e-11,3;CL:0002231,4.90e-11,3;CL:0000349,1.07e-09,19;CL:0002368,3.59e-09,13;CL:0002251,3.66e-09,20;CL:0002336,1.32e-08,1;CL:0002261,1.32e-08,1;CL:0002170,1.32e-08,1;CL:0002077,1.78e-07,34;CL:0002537,7.26e-07,5;CL:0000622,8.17e-07,5 | |||
|ontology_enrichment_development_v019=CL:0000357;6.93e-20;6!CL:0000114;6.93e-20;6!CL:0000223;6.48e-08;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!7.33e-15!14;UBERON:0000158!7.33e-15!14;UBERON:0003124!5.65e-14!7;UBERON:0004119!1.25e-12!169;UBERON:0000925!1.25e-12!169;UBERON:0006595!1.25e-12!169;UBERON:0000161!4.36e-10!35;UBERON:0001949!8.34e-10!3;UBERON:0000478!1.26e-09!24;UBERON:0000476!1.84e-09!3;UBERON:0000920!1.84e-09!3;UBERON:0000365!9.70e-09!5;UBERON:0003102!3.67e-08!95;UBERON:0001911!2.09e-07!4;UBERON:0005333!2.09e-07!4;UBERON:0008425!2.09e-07!4;UBERON:0005311!2.09e-07!4;UBERON:0005910!2.79e-07!6;UBERON:0004923!4.55e-07!57;UBERON:0005911!7.53e-07!82 | |||
|ontology_enrichment_uberon_v019=UBERON:0001949;2.96e-23;3!UBERON:0005631;1.58e-18;10!UBERON:0000158;1.58e-18;10!UBERON:0001911;2.42e-17;4!UBERON:0003124;2.74e-11;3!UBERON:0000920;2.74e-11;3!UBERON:0010371;8.74e-11;31!UBERON:0003929;2.75e-10;7!UBERON:0000486;3.45e-10;12!UBERON:0000305;5.92e-10;7!UBERON:0003729;2.05e-09;13!UBERON:0003350;4.63e-09;8!UBERON:0001828;4.63e-09;8!UBERON:0001708;9.74e-09;4!UBERON:0008895;9.74e-09;4!UBERON:0004923;3.72e-08;55!UBERON:0001003;4.63e-08;15!UBERON:0007376;4.63e-08;15!UBERON:0000478;1.29e-07;24!UBERON:0011159;3.77e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001949,2.28e-23,3;UBERON:0001911,1.24e-17,4;UBERON:0005333,1.24e-17,4;UBERON:0008425,1.24e-17,4;UBERON:0005311,1.24e-17,4;UBERON:0005631,3.19e-13,14;UBERON:0000158,3.19e-13,14;UBERON:0000920,2.54e-11,3;UBERON:0003102,2.29e-10,99;UBERON:0000305,5.75e-10,7;UBERON:0003729,1.94e-09,13;UBERON:0003350,4.21e-09,8;UBERON:0001828,4.21e-09,8;UBERON:0000076,4.44e-09,8;UBERON:0004871,8.79e-09,8;UBERON:0001708,9.75e-09,4;UBERON:0008895,9.75e-09,4;UBERON:0001003,4.34e-08,15;UBERON:0007376,4.34e-08,15;UBERON:0007383,4.34e-08,15;UBERON:0004923,8.45e-08,66;UBERON:0000478,1.24e-07,24;UBERON:0011159,3.77e-07,5;UBERON:0000161,5.12e-07,36;UBERON:0004121,9.13e-07,171;UBERON:0000924,9.13e-07,171;UBERON:0006601,9.13e-07,171 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,1.05506791291381,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.12586938479627,3.54569956768085,1.72082757233402,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.64625428112938,1.1240175325762,2.41269533787914,1.38882667737794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.2153387433578,3.1190521393325,1.97028749946266,1.74380363108377,3.06706143332169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606255142892519,0,0.604780586659361,0,0,0,0,0,0,0,0.154209693802656,0,0,0,0,0,6.01519410909855,1.47329582297434,0,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0.447749509444357,0,0,0,0,0,0,0,0,0,1.95018073810956,0,0,0,0,0,0,0,0,0,2.64455864577565,1.15314040419064,0.638063562472921,1.2138933702666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0.577332676353072,0,1.08890984861323,0,0.43050537267123,0,0.443430153536676,1.60806380144872,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.67121139316383,0,1.84296421259539,0,0,0,0,0,0,0,0,0,0,0,0.269605053441981,0,0,0,0,0,0,0,0,0,0,0,0.341380344856499,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,2.55200927785536,0.274792780205587,6.39641731222362,0,0,0,0,0,0,0,0,0.632994193584081,0,0.141353071433941,0,0,0,0,0,0.123563938946503,0,0,0,0,0,0,0,0,0,0,0,0,0.103688191397247,0,0,0,0,0,0,0.173559738335131,0,0.0870592065804026,0,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0,0,0,0.144090417154106,0,0,0,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308801447160972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184105950251841,0.419638523158333,0,0,0,0,0,0,0,0,0,0,0.23658523500376,0,0,0,0,0,0,0,0,0,0,0,0,0,0.366857197043358,0.115525666150338,0,0,0,0,0,0,0,0,0.147856086217045,0,0,0,0,0,0,0,0,0.255524855279191,0,0,0,0,0.177404740325278,0,0,0,0,0.118193840883968,0.222462803784138,0,0,0,0,0,0,0,0,0,0,0,1.24329698497822,0.51215543128185,0,0,0,0.0852134047591577,0,0.9164274741762,0,0,0,0.098150233615243,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0,0,0,0,0,0,0,1.05868461514708,0,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131862580613,0,0,0,0,0,0,0,0.0814032686109745,0,0,0,0,0,0.406896178315738,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,1.05506791291381,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.12586938479627,3.54569956768085,1.72082757233402,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.64625428112938,1.1240175325762,2.41269533787914,1.38882667737794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.2153387433578,3.1190521393325,1.97028749946266,1.74380363108377,3.06706143332169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606255142892519,0,0.604780586659361,0,0,0,0,0,0,0,0.154209693802656,0,0,0,0,0,6.01519410909855,1.47329582297434,0,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0.447749509444357,0,0,0,0,0,0,0,0,0,1.95018073810956,0,0,0,0,0,0,0,0,0,2.64455864577565,1.15314040419064,0.638063562472921,1.2138933702666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0.577332676353072,0,1.08890984861323,0,0.43050537267123,0,0.443430153536676,1.60806380144872,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.67121139316383,0,1.84296421259539,0,0,0,0,0,0,0,0,0,0,0,0.269605053441981,0,0,0,0,0,0,0,0,0,0,0,0.341380344856499,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,2.55200927785536,0.274792780205587,6.39641731222362,0,0,0,0,0,0,0,0,0.632994193584081,0,0.141353071433941,0,0,0,0,0,0.123563938946503,0,0,0,0,0,0,0,0,0,0,0,0,0.103688191397247,0,0,0,0,0,0,0.173559738335131,0,0.0870592065804026,0,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0,0,0,0.144090417154106,0,0,0,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308801447160972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184105950251841,0.419638523158333,0,0,0,0,0,0,0,0,0,0,0.23658523500376,0,0,0,0,0,0,0,0,0,0,0,0,0,0.366857197043358,0.115525666150338,0,0,0,0,0,0,0,0,0.147856086217045,0,0,0,0,0,0,0,0,0.255524855279191,0,0,0,0,0.177404740325278,0,0,0,0,0.118193840883968,0.222462803784138,0,0,0,0,0,0,0,0,0,0,0,1.24329698497822,0.51215543128185,0,0,0,0.0852134047591577,0,0.9164274741762,0,0,0,0.098150233615243,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0,0,0,0,0,0,0,1.05868461514708,0,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131862580613,0,0,0,0,0,0,0,0.0814032686109745,0,0,0,0,0,0.406896178315738,0,0,0 | ||
|short_description=p@chr18:21487788..21487807,+ | |||
}} | }} |
Latest revision as of 00:00, 26 July 2015
Short description: | p@chr18:21487788..21487807, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr18:21487788..21487807, + |
Coexpression cluster: | C363_Mallassezderived_Gingival_Keratinocyte_Mammary_Prostate_Small_Urothelial |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
gingival epithelial cell | 2.28e-23 | 3 |
stratified squamous epithelial cell | 8.68e-20 | 6 |
keratin accumulating cell | 8.68e-20 | 6 |
stratified epithelial cell | 8.68e-20 | 6 |
keratinizing barrier epithelial cell | 8.68e-20 | 6 |
epithelial fate stem cell | 8.68e-20 | 6 |
stratified epithelial stem cell | 8.68e-20 | 6 |
surface ectodermal cell | 8.68e-20 | 6 |
endo-epithelial cell | 2.34e-19 | 42 |
general ecto-epithelial cell | 7.07e-19 | 14 |
mammary gland epithelial cell | 1.24e-17 | 4 |
keratinocyte | 7.45e-14 | 5 |
endodermal cell | 1.69e-13 | 58 |
epidermal cell | 2.21e-13 | 9 |
epithelial cell | 1.91e-11 | 253 |
epithelial cell of Malassez | 2.29e-11 | 3 |
chorionic membrane mesenchymal stem cell | 2.54e-11 | 3 |
epithelial cell of prostate | 4.90e-11 | 3 |
extraembryonic cell | 1.07e-09 | 19 |
respiratory epithelial cell | 3.59e-09 | 13 |
epithelial cell of alimentary canal | 3.66e-09 | 20 |
buccal mucosa cell | 1.32e-08 | 1 |
endothelial cell of viscerocranial mucosa | 1.32e-08 | 1 |
keratinized cell of the oral mucosa | 1.32e-08 | 1 |
ecto-epithelial cell | 1.78e-07 | 34 |
amnion mesenchymal stem cell | 7.26e-07 | 5 |
acinar cell | 8.17e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
gingival epithelium | 2.28e-23 | 3 |
mammary gland | 1.24e-17 | 4 |
mammary bud | 1.24e-17 | 4 |
mammary ridge | 1.24e-17 | 4 |
mammary placode | 1.24e-17 | 4 |
extraembryonic membrane | 3.19e-13 | 14 |
membranous layer | 3.19e-13 | 14 |
egg chorion | 2.54e-11 | 3 |
surface structure | 2.29e-10 | 99 |
amnion | 5.75e-10 | 7 |
mouth mucosa | 1.94e-09 | 13 |
epithelium of mucosa | 4.21e-09 | 8 |
gingiva | 4.21e-09 | 8 |
external ectoderm | 4.44e-09 | 8 |
somatic layer of lateral plate mesoderm | 8.79e-09 | 8 |
jaw skeleton | 9.75e-09 | 4 |
splanchnocranium | 9.75e-09 | 4 |
skin epidermis | 4.34e-08 | 15 |
outer epithelium | 4.34e-08 | 15 |
enveloping layer of ectoderm | 4.34e-08 | 15 |
organ component layer | 8.45e-08 | 66 |
extraembryonic structure | 1.24e-07 | 24 |
primary subdivision of cranial skeletal system | 3.77e-07 | 5 |
orifice | 5.12e-07 | 36 |
ectoderm-derived structure | 9.13e-07 | 171 |
ectoderm | 9.13e-07 | 171 |
presumptive ectoderm | 9.13e-07 | 171 |