FFCP PHASE1:Hg19::chr2:174918717..174918755,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:174918717..174918755,- | |||
|coexpression_cluster_id=C1007 | |coexpression_cluster_id=C1007 | ||
|description=CAGE_peak_at_chr2:174918717..174918755,- | |description=CAGE_peak_at_chr2:174918717..174918755,- | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002322!7.67e-07!5 | |ontology_enrichment_celltype=CL:0002322!7.67e-07!5 | ||
|ontology_enrichment_celltype_v019=CL:0000349;1.04e-40;19!CL:0002577;9.99e-21;3!CL:0002541;2.36e-20;3!CL:0002536;1.44e-14;2!CL:0002537;5.10e-13;5!CL:0000039;1.34e-08;7!CL:0000586;1.34e-08;7 | |ontology_enrichment_celltype_v019=CL:0000349;1.04e-40;19!CL:0002577;9.99e-21;3!CL:0002541;2.36e-20;3!CL:0002536;1.44e-14;2!CL:0002537;5.10e-13;5!CL:0000039;1.34e-08;7!CL:0000586;1.34e-08;7 | ||
|ontology_enrichment_celltype_v019_2=CL:0000349,1.19e-40,19;CL:0002577,1.18e-20,3;CL:0002541,2.44e-20,3;CL:0002536,1.44e-14,2;CL:0002537,5.21e-13,5;CL:0000039,1.36e-08,7;CL:0000586,1.36e-08,7 | |||
|ontology_enrichment_development_v019=UBERON:0000358;5.33e-08;1!UBERON:0005425;1.39e-07;1 | |ontology_enrichment_development_v019=UBERON:0000358;5.33e-08;1!UBERON:0005425;1.39e-07;1 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:178;5.90e-08;1!DOID:326;5.90e-08;1!DOID:3978;5.90e-08;1!DOID:3394;5.90e-08;1!DOID:5844;5.90e-08;1!DOID:0050619;7.70e-08;1!DOID:1357;7.70e-08;1 | |ontology_enrichment_disease_v019=DOID:178;5.90e-08;1!DOID:326;5.90e-08;1!DOID:3978;5.90e-08;1!DOID:3394;5.90e-08;1!DOID:5844;5.90e-08;1!DOID:0050619;7.70e-08;1!DOID:1357;7.70e-08;1 | ||
|ontology_enrichment_disease_v019_2=DOID:178,5.70e-08,1;DOID:326,5.70e-08,1;DOID:3978,5.70e-08,1;DOID:3394,5.70e-08,1;DOID:5844,5.70e-08,1;DOID:0050619,6.52e-08,1;DOID:1357,6.52e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0005631!7.04e-18!14;UBERON:0000158!7.04e-18!14;UBERON:0003124!5.30e-13!7;UBERON:0000478!1.21e-10!24;UBERON:0001987!4.12e-08!4;UBERON:0004340!4.12e-08!4;UBERON:0000305!4.84e-07!7 | |ontology_enrichment_uberon=UBERON:0005631!7.04e-18!14;UBERON:0000158!7.04e-18!14;UBERON:0003124!5.30e-13!7;UBERON:0000478!1.21e-10!24;UBERON:0001987!4.12e-08!4;UBERON:0004340!4.12e-08!4;UBERON:0000305!4.84e-07!7 | ||
|ontology_enrichment_uberon_v019=UBERON:0005631;6.22e-42;10!UBERON:0000158;6.22e-42;10!UBERON:0000478;6.47e-38;24!UBERON:0000305;2.52e-24;7!UBERON:0003124;2.36e-20;3!UBERON:0000920;2.36e-20;3!UBERON:0001987;1.09e-15;4!UBERON:0001764;7.70e-08;1!UBERON:0001825;7.70e-08;1!UBERON:0005795;1.39e-07;1!UBERON:0007029;1.39e-07;1!UBERON:0000941;1.39e-07;1!UBERON:0001785;1.39e-07;1!UBERON:0002464;1.39e-07;1!UBERON:0004904;1.39e-07;1!UBERON:0001021;1.39e-07;1!UBERON:0001052;2.13e-07;4!UBERON:0004923;2.48e-07;55 | |ontology_enrichment_uberon_v019=UBERON:0005631;6.22e-42;10!UBERON:0000158;6.22e-42;10!UBERON:0000478;6.47e-38;24!UBERON:0000305;2.52e-24;7!UBERON:0003124;2.36e-20;3!UBERON:0000920;2.36e-20;3!UBERON:0001987;1.09e-15;4!UBERON:0001764;7.70e-08;1!UBERON:0001825;7.70e-08;1!UBERON:0005795;1.39e-07;1!UBERON:0007029;1.39e-07;1!UBERON:0000941;1.39e-07;1!UBERON:0001785;1.39e-07;1!UBERON:0002464;1.39e-07;1!UBERON:0004904;1.39e-07;1!UBERON:0001021;1.39e-07;1!UBERON:0001052;2.13e-07;4!UBERON:0004923;2.48e-07;55 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,7.20e-56,14;UBERON:0000158,7.20e-56,14;UBERON:0000478,7.27e-38,24;UBERON:0003124,1.56e-33,7;UBERON:0000305,2.59e-24,7;UBERON:0004871,2.95e-21,8;UBERON:0000920,2.44e-20,3;UBERON:0004923,2.11e-19,66;UBERON:0001987,1.23e-15,4;UBERON:0004340,1.23e-15,4;UBERON:0001764,6.52e-08,1;UBERON:0001825,6.52e-08,1;UBERON:0007029,1.18e-07,1;UBERON:0000941,1.26e-07,1;UBERON:0001785,1.26e-07,1;UBERON:0002464,1.26e-07,1;UBERON:0004904,1.26e-07,1;UBERON:0001021,1.26e-07,1;UBERON:0003902,1.26e-07,1;UBERON:0005425,1.26e-07,1;UBERON:0001052,2.35e-07,4 | |||
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|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,10.9220686065086,5.27533956456907,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0.728590576585084,2.96627554227544,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0.163461903113459,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,1.36373060295417,0,0.121973706129595,0.132529768321485,0.116193942869518,0.207322110030741,0.504641701751257,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.737930631258681,0,0.98775256867763,0,0.804231779293047,0.185176890317059,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0.871533458600294,0.399891964728228,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.500170521059677,0,0,0,0,0,0,0,1.03473071292505,0,0,0,0,0,0,0,0,2.12189300012382,8.32177197552485,9.07170879989041,0,0,0,0,0,0,0,0,0,0.0821271560138091,0.519254429183621,0,0.241718899183244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309123034943167,0,0,0,1.95018073810956,0,0,0.154048617114644,0,0,0,0.145016693914229,0,0,0.330569830721956,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.54907405947211,0.117812402345686,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354761064070598,0,0,0,0,0.0962221127255121,0,0,0.376575203107117,0.43050537267123,0,0.443430153536676,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111443384277478,3.12549761487054,10.027268358983,12.1755519141382,16.8938386154578,0,0,0,0,0,0,0,0,0.511343412510774,0,0,0.179736702294654,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0.41827123283581,0.230850775511391,0,1.38338342632836,0.538545866458633,1.19512109114209,6.06102203490647,1.37396390102793,7.46248686426089,0,0,0,0,0,0,0,0,0,0,1.27217764290547,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0,0.394584402849391,0,0,0,0,0,0,0,0.313932918407225,0,0,0,0,0.195984794828755,0,0,0,0,0,0,0.290967049465258,0.176512253383001,0,0,0,0,0,0,0,0,0.144090417154106,0.114536596165916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.59422200898184,0,0,0.0671834724867263,0,0,0.157566364614447,0.0824158583811665,0.13480708770837,0,0,0,0,0.643012593860077,0.137539436597234,0,0,0,0,0.335434687599266,0,0,0,0.35857467866569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.513260513652988,0,0,0,0.414239055347196,0,0,0,0,0,0.2506898940227,0,0,2.98402782875445,0,0,0,0,0.110929051536852,0.0620964029413835,0.138348634936231,0,0.151649117541648,0,0,0,0,0,0,0,0,0,0,0,0,0.466311601748341,0,0.159296767163702,0,0,0.414706207840855,0,0,0.150257608997218,0.380805212168795,0,0,0,0,0,0,0,0,0,0.192619830407303,0,0,0.226705925512272,0.231522474323834,0,0,2.16161013012681,2.19284049578707,0.353378291891762,0,0,0,0,0.303859956177382,0,0.389720617678777,0,0,0,0,0,0,0,0,0,0,0.279759015438889,0,0,0,0,0,0,0,0,0,0,0,0,0,0.3062454773532,0.0642292250964595,0,0,0,0,0,0,1.42769420259154,0,0,0,0,0,0,0,0.150420656698515,0,0,0.785720083444267,0,0.739280431085226,0,0,0,0,0,0,0,0,0,0,0,0,0,0.887023701626388,0,0,0,0,0,0,0.156986185701028,0,5.32517110296199,0.913158720509496,0.215927591218621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.490751168076215,0,0,0,0,1.45713297917742,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.83988811947732,0,0,0,0,0,0,0.126166424835079,0.546327859818478,0.380095503034311,0.713921808193872,0,1.47031839255752,0,0,0,0,0,0.426467963801962,0.476128862927481,0,0,0,0,0,1.30630048738177,0.342233301085281,0.26940821205835,0,0,0,0,0,0.808426818959282,4.69281884806909,0.122241444182866,1.62758471326295,0,0,0 | ||
|short_description=p@chr2:174918717..174918755,- | |short_description=p@chr2:174918717..174918755,- | ||
}} | }} |
Latest revision as of 02:37, 29 July 2015
Short description: | p@chr2:174918717..174918755, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:174918717..174918755, - |
Coexpression cluster: | C1007_amniotic_chorionic_Placental_Amniotic_placenta_rectal_umbilical |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 1.19e-40 | 19 |
placental epithelial cell | 1.18e-20 | 3 |
chorionic membrane mesenchymal stem cell | 2.44e-20 | 3 |
amniotic epithelial cell | 1.44e-14 | 2 |
amnion mesenchymal stem cell | 5.21e-13 | 5 |
germ line cell | 1.36e-08 | 7 |
germ cell | 1.36e-08 | 7 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 7.20e-56 | 14 |
membranous layer | 7.20e-56 | 14 |
extraembryonic structure | 7.27e-38 | 24 |
chorion | 1.56e-33 | 7 |
amnion | 2.59e-24 | 7 |
somatic layer of lateral plate mesoderm | 2.95e-21 | 8 |
egg chorion | 2.44e-20 | 3 |
organ component layer | 2.11e-19 | 66 |
placenta | 1.23e-15 | 4 |
allantois | 1.23e-15 | 4 |
maxillary sinus | 6.52e-08 | 1 |
paranasal sinus | 6.52e-08 | 1 |
surface | 1.18e-07 | 1 |
cranial nerve II | 1.26e-07 | 1 |
cranial nerve | 1.26e-07 | 1 |
nerve trunk | 1.26e-07 | 1 |
nerve connecting eye with brain | 1.26e-07 | 1 |
nerve | 1.26e-07 | 1 |
retinal neural layer | 1.26e-07 | 1 |
presumptive neural retina | 1.26e-07 | 1 |
rectum | 2.35e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
vascular disease | 5.70e-08 | 1 |
ischemia | 5.70e-08 | 1 |
extrinsic cardiomyopathy | 5.70e-08 | 1 |
myocardial ischemia | 5.70e-08 | 1 |
myocardial infarction | 5.70e-08 | 1 |
paranasal sinus cancer | 6.52e-08 | 1 |
maxillary sinus cancer | 6.52e-08 | 1 |