FFCP PHASE1:Hg19::chr2:28340361..28340371,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:28340361..28340371,+ | |||
|coexpression_cluster_id=C235 | |coexpression_cluster_id=C235 | ||
|description=CAGE_peak_at_chr2:28340361..28340371,+ | |description=CAGE_peak_at_chr2:28340361..28340371,+ | ||
|id=chr2:28340361..28340371,+ | |id=chr2:28340361..28340371,+ | ||
|ontology_enrichment_celltype=CL:0000239!1.48e-18!3;CL:1000615!1.48e-18!3;CL:0002306!1.48e-18!3;CL:0002563!1.41e-14!4;CL:1000497!4.71e-12!18;CL:0002518!4.71e-12!18;CL:1000507!1.79e-10!12;CL:1000494!1.79e-10!12;CL:0002253!3.82e-08!2;CL:1000449!5.44e-08!16 | |ontology_enrichment_celltype=CL:0000239!1.48e-18!3;CL:1000615!1.48e-18!3;CL:0002306!1.48e-18!3;CL:0002563!1.41e-14!4;CL:1000497!4.71e-12!18;CL:0002518!4.71e-12!18;CL:1000507!1.79e-10!12;CL:1000494!1.79e-10!12;CL:0002253!3.82e-08!2;CL:1000449!5.44e-08!16 | ||
|ontology_enrichment_celltype_v019=CL:0002563;3.96e-66;4!CL:0002253;4.27e-34;2!CL:0002231;2.93e-23;3!CL:0002076;8.60e-16;42!CL:0002251;2.67e-14;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,4.67e-66,4;CL:0002253,5.04e-34,2;CL:0002231,2.62e-23,3;CL:0002076,3.52e-15,42;CL:0002251,2.76e-14,20;CL:0000223,2.67e-11,58 | |||
|ontology_enrichment_development_v019=CL:0000223;2.53e-07;58 | |||
|ontology_enrichment_disease=DOID:8552!1.84e-14!1 | |ontology_enrichment_disease=DOID:8552!1.84e-14!1 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0001242;3.96e-66;4!UBERON:0001262;3.96e-66;4!UBERON:0004786;3.96e-66;4!UBERON:0004808;3.96e-66;4!UBERON:0001277;3.96e-66;4!UBERON:0000485;1.98e-38;7!UBERON:0003929;1.98e-38;7!UBERON:0003350;8.35e-34;8!UBERON:0001052;8.00e-18;4!UBERON:0000160;9.40e-16;17!UBERON:0004907;1.50e-14;5!UBERON:0000344;2.67e-14;20!UBERON:0005409;1.36e-12;22!UBERON:0004921;2.85e-09;33!UBERON:0001155;1.08e-08;9!UBERON:0005911;1.28e-08;36!UBERON:0000490;1.28e-08;33!UBERON:0002367;2.40e-07;11!UBERON:0010147;2.40e-07;11!UBERON:0000059;2.40e-07;11!UBERON:0003937;7.70e-07;12!UBERON:0005399;7.70e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001242,4.67e-66,4;UBERON:0001262,4.67e-66,4;UBERON:0004786,4.67e-66,4;UBERON:0004808,4.67e-66,4;UBERON:0001277,4.67e-66,4;UBERON:0003350,9.08e-34,8;UBERON:0000485,3.59e-30,9;UBERON:0001052,8.69e-18,4;UBERON:0000160,9.75e-16,17;UBERON:0001046,4.91e-15,19;UBERON:0004907,1.60e-14,5;UBERON:0000344,2.76e-14,20;UBERON:0003929,4.68e-12,54;UBERON:0005409,2.91e-11,25;UBERON:0001155,1.12e-08,9;UBERON:0005911,2.70e-08,82;UBERON:0002367,2.32e-07,11;UBERON:0010147,2.32e-07,11;UBERON:0009846,2.32e-07,11;UBERON:0003353,2.32e-07,11;UBERON:0004902,2.32e-07,11;UBERON:0003820,2.32e-07,11;UBERON:0009847,2.32e-07,11;UBERON:0000059,2.47e-07,11;UBERON:0003937,7.48e-07,12;UBERON:0005399,7.48e-07,12 | |||
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|short_description=p@chr2:28340361..28340371,+ | |short_description=p@chr2:28340361..28340371,+ | ||
}} | }} |
Latest revision as of 09:19, 29 July 2015
Short description: | p@chr2:28340361..28340371, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:28340361..28340371, + |
Coexpression cluster: | C235_Intestinal_Prostate_liver_colon_small_kidney_pancreas |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 4.67e-66 | 4 |
epithelial cell of large intestine | 5.04e-34 | 2 |
epithelial cell of prostate | 2.62e-23 | 3 |
endo-epithelial cell | 3.52e-15 | 42 |
epithelial cell of alimentary canal | 2.76e-14 | 20 |
endodermal cell | 2.67e-11 | 58 |
Ontology term | p-value | n |
---|---|---|
intestinal mucosa | 4.67e-66 | 4 |
wall of intestine | 4.67e-66 | 4 |
gastrointestinal system mucosa | 4.67e-66 | 4 |
gastrointestinal system epithelium | 4.67e-66 | 4 |
intestinal epithelium | 4.67e-66 | 4 |
epithelium of mucosa | 9.08e-34 | 8 |
simple columnar epithelium | 3.59e-30 | 9 |
rectum | 8.69e-18 | 4 |
intestine | 9.75e-16 | 17 |
hindgut | 4.91e-15 | 19 |
lower digestive tract | 1.60e-14 | 5 |
mucosa | 2.76e-14 | 20 |
gut epithelium | 4.68e-12 | 54 |
gastrointestinal system | 2.91e-11 | 25 |
colon | 1.12e-08 | 9 |
endo-epithelium | 2.70e-08 | 82 |
prostate gland | 2.32e-07 | 11 |
male accessory sex gland | 2.32e-07 | 11 |
embryonic cloacal epithelium | 2.32e-07 | 11 |
epithelium of hindgut | 2.32e-07 | 11 |
urogenital sinus epithelium | 2.32e-07 | 11 |
prostate bud | 2.32e-07 | 11 |
prostate field | 2.32e-07 | 11 |
large intestine | 2.47e-07 | 11 |
sex gland | 7.48e-07 | 12 |
male reproductive gland | 7.48e-07 | 12 |