FFCP PHASE1:Hg19::chr2:56216738..56216739,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:56216738..56216739,- | |||
|coexpression_cluster_id=C381 | |coexpression_cluster_id=C381 | ||
|description=CAGE_peak_at_chr2:56216738..56216739,- | |description=CAGE_peak_at_chr2:56216738..56216739,- | ||
|id=chr2:56216738..56216739,- | |id=chr2:56216738..56216739,- | ||
|ontology_enrichment_celltype=CL:0002543!5.98e-82!6;CL:0002139!1.89e-81!24;CL:0002618!1.22e-59!3;CL:0000115!7.79e-56!35;CL:0000071!1.65e-53!18;CL:0002546!1.65e-53!18;CL:0002078!2.18e-44!44;CL:0000213!3.18e-34!57;CL:0000215!3.18e-34!57;CL:0005020!3.76e-30!6;CL:0002138!3.76e-30!6;CL:0005022!3.76e-30!6;CL:0000222!3.14e-16!119;CL:0000076!1.73e-15!62;CL:0002545!1.82e-11!2;CL:1000413!7.08e-10!9;CL:0000220!1.62e-07!246;CL:0002321!1.88e-07!248;CL:0000066!2.52e-07!254 | |ontology_enrichment_celltype=CL:0002543!5.98e-82!6;CL:0002139!1.89e-81!24;CL:0002618!1.22e-59!3;CL:0000115!7.79e-56!35;CL:0000071!1.65e-53!18;CL:0002546!1.65e-53!18;CL:0002078!2.18e-44!44;CL:0000213!3.18e-34!57;CL:0000215!3.18e-34!57;CL:0005020!3.76e-30!6;CL:0002138!3.76e-30!6;CL:0005022!3.76e-30!6;CL:0000222!3.14e-16!119;CL:0000076!1.73e-15!62;CL:0002545!1.82e-11!2;CL:1000413!7.08e-10!9;CL:0000220!1.62e-07!246;CL:0002321!1.88e-07!248;CL:0000066!2.52e-07!254 | ||
|ontology_enrichment_celltype_v019=CL:0002545;3.52e-50;2!CL:0002618;5.04e-34;3!CL:0000071;3.88e-23;18!CL:0002544;8.34e-18;6!CL:0002543;8.34e-18;6!CL:0002139;1.03e-17;24!CL:1000413;2.31e-12;9!CL:0000115;4.11e-12;36!CL:0002078;8.88e-10;45!CL:0000076;1.58e-09;63!CL:0000213;8.24e-08;58!CL:0000215;8.24e-08;58 | |||
|ontology_enrichment_celltype_v019_2=CL:0002545,2.74e-50,2;CL:0002618,5.96e-34,3;CL:0000071,3.88e-23,18;CL:0002546,3.88e-23,18;CL:0002544,7.67e-18,6;CL:0002543,9.07e-18,6;CL:0002139,1.03e-17,24;CL:1000413,2.19e-12,9;CL:0000115,2.91e-12,36;CL:0002078,4.55e-10,45;CL:0000213,4.33e-08,58;CL:0000215,4.33e-08,58;CL:0000076,1.52e-07,63 | |||
|ontology_enrichment_development_v019=CL:0002546;3.88e-23;18 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001638!8.42e-55!9;UBERON:0003920!8.42e-55!9;UBERON:0004582!8.42e-55!9;UBERON:0001986!1.65e-53!18;UBERON:0004638!1.65e-53!18;UBERON:0004852!1.65e-53!18;UBERON:0000487!8.54e-44!22;UBERON:0006914!1.52e-38!25;UBERON:0002066!3.66e-36!5;UBERON:0000055!3.13e-28!69;UBERON:0002049!1.27e-24!79;UBERON:0007798!1.27e-24!79;UBERON:0001473!8.05e-23!8;UBERON:0004536!8.05e-23!8;UBERON:0006558!8.05e-23!8;UBERON:0002465!2.06e-18!10;UBERON:0004535!1.37e-17!110;UBERON:0001009!4.11e-17!113;UBERON:0001981!5.20e-16!60;UBERON:0007500!5.20e-16!60;UBERON:0004537!5.20e-16!60;UBERON:0006965!5.20e-16!60;UBERON:0005800!1.82e-11!2;UBERON:0001515!1.82e-11!2;UBERON:0004872!2.25e-11!84;UBERON:0003915!7.08e-10!9;UBERON:0004700!7.08e-10!9;UBERON:0001917!7.08e-10!9;UBERON:0003914!5.18e-08!118;UBERON:0004111!1.02e-07!241;UBERON:0000490!8.45e-07!138 | |ontology_enrichment_uberon=UBERON:0001638!8.42e-55!9;UBERON:0003920!8.42e-55!9;UBERON:0004582!8.42e-55!9;UBERON:0001986!1.65e-53!18;UBERON:0004638!1.65e-53!18;UBERON:0004852!1.65e-53!18;UBERON:0000487!8.54e-44!22;UBERON:0006914!1.52e-38!25;UBERON:0002066!3.66e-36!5;UBERON:0000055!3.13e-28!69;UBERON:0002049!1.27e-24!79;UBERON:0007798!1.27e-24!79;UBERON:0001473!8.05e-23!8;UBERON:0004536!8.05e-23!8;UBERON:0006558!8.05e-23!8;UBERON:0002465!2.06e-18!10;UBERON:0004535!1.37e-17!110;UBERON:0001009!4.11e-17!113;UBERON:0001981!5.20e-16!60;UBERON:0007500!5.20e-16!60;UBERON:0004537!5.20e-16!60;UBERON:0006965!5.20e-16!60;UBERON:0005800!1.82e-11!2;UBERON:0001515!1.82e-11!2;UBERON:0004872!2.25e-11!84;UBERON:0003915!7.08e-10!9;UBERON:0004700!7.08e-10!9;UBERON:0001917!7.08e-10!9;UBERON:0003914!5.18e-08!118;UBERON:0004111!1.02e-07!241;UBERON:0000490!8.45e-07!138 | ||
|ontology_enrichment_uberon_v019=UBERON:0005800;3.52e-50;2!UBERON:0001515;3.52e-50;2!UBERON:0004638;3.88e-23;18!UBERON:0001986;3.88e-23;18!UBERON:0004852;3.88e-23;18!UBERON:0002066;4.66e-21;5!UBERON:0000487;3.41e-19;22!UBERON:0006914;4.64e-17;25!UBERON:0001638;2.31e-12;9!UBERON:0010260;2.31e-12;9!UBERON:0003920;2.31e-12;9!UBERON:0003915;2.31e-12;9!UBERON:0004700;2.31e-12;9!UBERON:0001917;2.31e-12;9!UBERON:0004582;2.31e-12;9!UBERON:0000490;1.70e-11;33!UBERON:0000055;8.55e-09;65!UBERON:0007500;1.47e-07;56!UBERON:0001981;1.47e-07;56!UBERON:0004537;1.47e-07;56 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005800,2.74e-50,2;UBERON:0001515,2.74e-50,2;UBERON:0004638,3.88e-23,18;UBERON:0001986,3.88e-23,18;UBERON:0004852,3.88e-23,18;UBERON:0002066,5.15e-21,5;UBERON:0000487,3.41e-19,22;UBERON:0006914,4.64e-17,25;UBERON:0003915,2.19e-12,9;UBERON:0004700,2.19e-12,9;UBERON:0001917,2.19e-12,9;UBERON:0001638,2.45e-12,9;UBERON:0010260,2.45e-12,9;UBERON:0003920,2.45e-12,9;UBERON:0004582,2.45e-12,9;UBERON:0007500,5.66e-08,59;UBERON:0001981,5.66e-08,59;UBERON:0004537,5.66e-08,59;UBERON:0006965,5.66e-08,59;UBERON:0000055,4.47e-07,68 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.417989933073621,0,0.35576626268671,0.66944122552934,0,0,0,1.10298924103761,0,1.07159673940896,0.44905874525234,0.112611480483322,0,0.949265659568129,0.183201743930407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144366447761074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.417989933073621,0,0.35576626268671,0.66944122552934,0,0,0,1.10298924103761,0,1.07159673940896,0.44905874525234,0.112611480483322,0,0.949265659568129,0.183201743930407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144366447761074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr2:56216738..56216739,- | |short_description=p@chr2:56216738..56216739,- | ||
}} | }} |
Latest revision as of 11:02, 29 July 2015
Short description: | p@chr2:56216738..56216739, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:56216738..56216739, - |
Coexpression cluster: | C381_Endothelial_Renal_Hepatic_Lymphatic_Fibroblast_squamous_esophagus |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
thoracic aorta endothelial cell | 2.74e-50 | 2 |
endothelial cell of umbilical vein | 5.96e-34 | 3 |
blood vessel endothelial cell | 3.88e-23 | 18 |
embryonic blood vessel endothelial progenitor cell | 3.88e-23 | 18 |
aortic endothelial cell | 7.67e-18 | 6 |
vein endothelial cell | 9.07e-18 | 6 |
endothelial cell of vascular tree | 1.03e-17 | 24 |
endothelial cell of artery | 2.19e-12 | 9 |
endothelial cell | 2.91e-12 | 36 |
meso-epithelial cell | 4.55e-10 | 45 |
lining cell | 4.33e-08 | 58 |
barrier cell | 4.33e-08 | 58 |
squamous epithelial cell | 1.52e-07 | 63 |
Ontology term | p-value | n |
---|---|---|
segment of aorta | 2.74e-50 | 2 |
thoracic aorta | 2.74e-50 | 2 |
blood vessel endothelium | 3.88e-23 | 18 |
endothelium | 3.88e-23 | 18 |
cardiovascular system endothelium | 3.88e-23 | 18 |
umbilical vein | 5.15e-21 | 5 |
simple squamous epithelium | 3.41e-19 | 22 |
squamous epithelium | 4.64e-17 | 25 |
endothelial tube | 2.19e-12 | 9 |
arterial system endothelium | 2.19e-12 | 9 |
endothelium of artery | 2.19e-12 | 9 |
vein | 2.45e-12 | 9 |
umbilical blood vessel | 2.45e-12 | 9 |
venous blood vessel | 2.45e-12 | 9 |
venous system | 2.45e-12 | 9 |
epithelial tube open at both ends | 5.66e-08 | 59 |
blood vessel | 5.66e-08 | 59 |
blood vasculature | 5.66e-08 | 59 |
vascular cord | 5.66e-08 | 59 |
vessel | 4.47e-07 | 68 |