FFCP PHASE1:Hg19::chr3:46968478..46968499,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:46968478..46968499,- | |||
|coexpression_cluster_id=C813 | |coexpression_cluster_id=C813 | ||
|description=CAGE_peak_at_chr3:46968478..46968499,- | |description=CAGE_peak_at_chr3:46968478..46968499,- | ||
|id=chr3:46968478..46968499,- | |id=chr3:46968478..46968499,- | ||
|ontology_enrichment_celltype=CL:0000945!4.89e-34!24;CL:0000826!4.89e-34!24;CL:0000037!8.59e-33!172;CL:0000566!8.59e-33!172;CL:0002087!7.67e-32!119;CL:0000988!5.39e-30!182;CL:0000738!5.87e-29!140;CL:0002032!2.78e-28!165;CL:0000837!2.78e-28!165;CL:0002031!6.73e-26!124;CL:0000236!1.03e-23!14;CL:0000071!2.03e-22!18;CL:0002546!2.03e-22!18;CL:0000542!5.77e-21!53;CL:0000051!5.77e-21!53;CL:0000838!7.26e-20!52;CL:0002139!9.48e-16!24;CL:0002393!4.38e-15!9;CL:0002397!4.38e-15!9;CL:0000860!2.69e-14!45;CL:0002057!2.91e-14!42;CL:0000115!1.35e-12!35;CL:0002543!2.86e-12!6;CL:1000413!1.22e-10!9;CL:0002194!1.72e-10!63;CL:0000576!1.72e-10!63;CL:0000040!1.72e-10!63;CL:0000559!1.72e-10!63;CL:0000763!2.76e-10!112;CL:0000049!2.76e-10!112;CL:0002009!5.46e-10!65;CL:0002078!4.22e-09!44;CL:0000839!7.23e-09!70;CL:0000766!1.09e-08!76;CL:0000557!1.16e-08!71;CL:0000875!5.29e-08!3;CL:0002396!5.29e-08!3;CL:0000134!5.61e-08!358;CL:0002320!1.57e-07!365 | |ontology_enrichment_celltype=CL:0000945!4.89e-34!24;CL:0000826!4.89e-34!24;CL:0000037!8.59e-33!172;CL:0000566!8.59e-33!172;CL:0002087!7.67e-32!119;CL:0000988!5.39e-30!182;CL:0000738!5.87e-29!140;CL:0002032!2.78e-28!165;CL:0000837!2.78e-28!165;CL:0002031!6.73e-26!124;CL:0000236!1.03e-23!14;CL:0000071!2.03e-22!18;CL:0002546!2.03e-22!18;CL:0000542!5.77e-21!53;CL:0000051!5.77e-21!53;CL:0000838!7.26e-20!52;CL:0002139!9.48e-16!24;CL:0002393!4.38e-15!9;CL:0002397!4.38e-15!9;CL:0000860!2.69e-14!45;CL:0002057!2.91e-14!42;CL:0000115!1.35e-12!35;CL:0002543!2.86e-12!6;CL:1000413!1.22e-10!9;CL:0002194!1.72e-10!63;CL:0000576!1.72e-10!63;CL:0000040!1.72e-10!63;CL:0000559!1.72e-10!63;CL:0000763!2.76e-10!112;CL:0000049!2.76e-10!112;CL:0002009!5.46e-10!65;CL:0002078!4.22e-09!44;CL:0000839!7.23e-09!70;CL:0000766!1.09e-08!76;CL:0000557!1.16e-08!71;CL:0000875!5.29e-08!3;CL:0002396!5.29e-08!3;CL:0000134!5.61e-08!358;CL:0002320!1.57e-07!365 | ||
|ontology_enrichment_celltype_v019=CL:0000236;7.44e-41;13!CL:0000945;4.95e-38;24!CL:0000875;5.60e-22;3!CL:0002396;5.60e-22;3!CL:0000542;1.50e-16;53!CL:0002393;9.79e-11;6!CL:0002397;9.79e-11;6!CL:0002543;1.21e-10;6!CL:0002087;1.99e-07;104!CL:0000738;9.51e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,2.48e-38,24;CL:0000826,2.48e-38,24;CL:0000236,4.13e-38,14;CL:0002393,2.25e-27,9;CL:0002397,2.25e-27,9;CL:0000838,1.46e-22,52;CL:0000542,4.39e-22,53;CL:0000051,4.39e-22,53;CL:0000875,5.62e-22,3;CL:0002396,5.62e-22,3;CL:0000738,1.13e-21,136;CL:0002087,1.31e-21,115;CL:0002031,1.51e-20,120;CL:0000037,2.69e-20,168;CL:0002032,1.80e-19,161;CL:0000837,1.80e-19,161;CL:0000988,4.91e-19,177;CL:0002543,1.26e-10,6;CL:0000860,3.48e-07,42;CL:0002057,3.48e-07,42;CL:0000134,3.58e-07,354;CL:0002320,6.11e-07,361 | |||
|ontology_enrichment_development_v019=CL:0000051;1.50e-16;53 | |||
|ontology_enrichment_disease=DOID:2531!5.07e-10!51;DOID:0060083!5.07e-10!51;DOID:1240!8.95e-08!39 | |ontology_enrichment_disease=DOID:2531!5.07e-10!51;DOID:0060083!5.07e-10!51;DOID:1240!8.95e-08!39 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001986!2.03e-22!18;UBERON:0004638!2.03e-22!18;UBERON:0004852!2.03e-22!18;UBERON:0000487!1.45e-17!22;UBERON:0006914!5.93e-15!25;UBERON:0002390!2.17e-12!102;UBERON:0003061!2.17e-12!102;UBERON:0002193!2.24e-11!112;UBERON:0003081!3.59e-11!216;UBERON:0003915!1.22e-10!9;UBERON:0004700!1.22e-10!9;UBERON:0001917!1.22e-10!9;UBERON:0001638!1.68e-10!9;UBERON:0003920!1.68e-10!9;UBERON:0004582!1.68e-10!9;UBERON:0002371!7.19e-08!80;UBERON:0002405!4.73e-07!115;UBERON:0002384!6.29e-07!375;UBERON:0001474!6.29e-07!86 | |ontology_enrichment_uberon=UBERON:0001986!2.03e-22!18;UBERON:0004638!2.03e-22!18;UBERON:0004852!2.03e-22!18;UBERON:0000487!1.45e-17!22;UBERON:0006914!5.93e-15!25;UBERON:0002390!2.17e-12!102;UBERON:0003061!2.17e-12!102;UBERON:0002193!2.24e-11!112;UBERON:0003081!3.59e-11!216;UBERON:0003915!1.22e-10!9;UBERON:0004700!1.22e-10!9;UBERON:0001917!1.22e-10!9;UBERON:0001638!1.68e-10!9;UBERON:0003920!1.68e-10!9;UBERON:0004582!1.68e-10!9;UBERON:0002371!7.19e-08!80;UBERON:0002405!4.73e-07!115;UBERON:0002384!6.29e-07!375;UBERON:0001474!6.29e-07!86 | ||
|ontology_enrichment_uberon_v019=UBERON:0001638;3.01e-07;9!UBERON:0003920;3.01e-07;9!UBERON:0004582;3.01e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001638,3.08e-07,9;UBERON:0003920,3.08e-07,9;UBERON:0004582,3.08e-07,9 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.52826811495903,1.9704141467987,1.41679406364623,1.57345710739562,0,0,0,0,0,0.774672005803016,0,0.293600439334847,0.553995408531877,0,0.217010870715852,0,0,0,0.436194716338694,1.13362783106643,0.485168122375632,0.232429036905685,0.411167888021826,0,0,0,0,0.344745680736619,0,0,0,0.272906150057846,0.449446968890169,0,0,0.639337125799041,0,0,0.426224750532694,0,0,0,0,0,0,0,0,0,3.80259515361495,1.91343869968539,2.51590374610051,0.112328631146495,0,0.16072558669708,8.26536956849621,8.55341711956087,8.40255107317316,3.51992488922645,2.73069305631066,3.55803701545422,4.69403244823158,1.60158394814405,4.59801951963587,1.98313461835459,3.81621501814146,0.569212969109448,0,1.52909291250092,0,0,0.790152254325231,0,0,0.205601498999509,0,0,0,0,0,0,0,0.270803863765016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238490624305342,1.14398982156026,0.371457501329565,0.39752481473341,0,1.04142150482278,0.56530794192401,0.838998872419812,0.550236083880135,0.835979866147242,0,0,0,0.402829317109147,0,0.24406205754817,0,0.81014194788176,0.625098097988558,0.22452937262617,0.225222960966644,4.5994991239765,1.89853131913626,1.09921046358244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150238058906597,0,0,0.213557388818567,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,0,0.213455115606889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13733384070897,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.507447609232169,0,0,0.238231775457789,0.411362273086194,0,0,0,0,0,0,0.185803175125719,0.144269212976445,0,0.159426272728822,0.199579371432817,0.191505370132367,0.423347165447766,0,0,1.14117339516596,0,0,0,0.481764225311099,0,0.851692475380653,0.343505344755765,0.921722292925374,0,0,1.56310476321632,0,0,0,0,0,0,0,0,1.44876399560722,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246169610922139,0,0,0,0.511572370226872,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0.364909578431332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821154570532092,0,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05154941711726,0,0,0,0,0,0,0,0,0,0,0,0,0,0.423366660328922,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0,0,0.414239055347196,0,0,0.121792598380896,0,0,0,0,0,0,0,0.122026264901963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106691729694141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788617450012534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0.115233987555779,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0939839179798536,0.257831551894309,0.0999411559249289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0918948995348449,0,0,0,0,0,0,0,0.0645889098360061,0.0620747142958579,0,0,0,0,0,0.336760265072938,0,0,0,0,0,0,0,0,0,0,0.402547587182052,0.641136984606466 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.52826811495903,1.9704141467987,1.41679406364623,1.57345710739562,0,0,0,0,0,0.774672005803016,0,0.293600439334847,0.553995408531877,0,0.217010870715852,0,0,0,0.436194716338694,1.13362783106643,0.485168122375632,0.232429036905685,0.411167888021826,0,0,0,0,0.344745680736619,0,0,0,0.272906150057846,0.449446968890169,0,0,0.639337125799041,0,0,0.426224750532694,0,0,0,0,0,0,0,0,0,3.80259515361495,1.91343869968539,2.51590374610051,0.112328631146495,0,0.16072558669708,8.26536956849621,8.55341711956087,8.40255107317316,3.51992488922645,2.73069305631066,3.55803701545422,4.69403244823158,1.60158394814405,4.59801951963587,1.98313461835459,3.81621501814146,0.569212969109448,0,1.52909291250092,0,0,0.790152254325231,0,0,0.205601498999509,0,0,0,0,0,0,0,0.270803863765016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238490624305342,1.14398982156026,0.371457501329565,0.39752481473341,0,1.04142150482278,0.56530794192401,0.838998872419812,0.550236083880135,0.835979866147242,0,0,0,0.402829317109147,0,0.24406205754817,0,0.81014194788176,0.625098097988558,0.22452937262617,0.225222960966644,4.5994991239765,1.89853131913626,1.09921046358244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150238058906597,0,0,0.213557388818567,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,0,0.213455115606889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13733384070897,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.507447609232169,0,0,0.238231775457789,0.411362273086194,0,0,0,0,0,0,0.185803175125719,0.144269212976445,0,0.159426272728822,0.199579371432817,0.191505370132367,0.423347165447766,0,0,1.14117339516596,0,0,0,0.481764225311099,0,0.851692475380653,0.343505344755765,0.921722292925374,0,0,1.56310476321632,0,0,0,0,0,0,0,0,1.44876399560722,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246169610922139,0,0,0,0.511572370226872,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0.364909578431332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821154570532092,0,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05154941711726,0,0,0,0,0,0,0,0,0,0,0,0,0,0.423366660328922,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0,0,0.414239055347196,0,0,0.121792598380896,0,0,0,0,0,0,0,0.122026264901963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106691729694141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788617450012534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0.115233987555779,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0939839179798536,0.257831551894309,0.0999411559249289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0918948995348449,0,0,0,0,0,0,0,0.0645889098360061,0.0620747142958579,0,0,0,0,0,0.336760265072938,0,0,0,0,0,0,0,0,0,0,0.402547587182052,0.641136984606466 | ||
|short_description=p@chr3:46968478..46968499,- | |short_description=p@chr3:46968478..46968499,- | ||
}} | }} |
Latest revision as of 21:28, 29 July 2015
Short description: | p@chr3:46968478..46968499, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:46968478..46968499, - |
Coexpression cluster: | C813_CD19_CD14CD16_CD14_Macrophage_Monocytederived_pancreatic_choriocarcinoma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 2.48e-38 | 24 |
pro-B cell | 2.48e-38 | 24 |
B cell | 4.13e-38 | 14 |
intermediate monocyte | 2.25e-27 | 9 |
CD14-positive, CD16-positive monocyte | 2.25e-27 | 9 |
lymphoid lineage restricted progenitor cell | 1.46e-22 | 52 |
lymphocyte | 4.39e-22 | 53 |
common lymphoid progenitor | 4.39e-22 | 53 |
non-classical monocyte | 5.62e-22 | 3 |
CD14-low, CD16-positive monocyte | 5.62e-22 | 3 |
leukocyte | 1.13e-21 | 136 |
nongranular leukocyte | 1.31e-21 | 115 |
hematopoietic lineage restricted progenitor cell | 1.51e-20 | 120 |
hematopoietic stem cell | 2.69e-20 | 168 |
hematopoietic oligopotent progenitor cell | 1.80e-19 | 161 |
hematopoietic multipotent progenitor cell | 1.80e-19 | 161 |
hematopoietic cell | 4.91e-19 | 177 |
vein endothelial cell | 1.26e-10 | 6 |
classical monocyte | 3.48e-07 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.48e-07 | 42 |
mesenchymal cell | 3.58e-07 | 354 |
connective tissue cell | 6.11e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
vein | 3.08e-07 | 9 |
venous blood vessel | 3.08e-07 | 9 |
venous system | 3.08e-07 | 9 |