FFCP PHASE1:Hg19::chr5:56248155..56248156,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr5:56248155..56248156,+ | |||
|description=CAGE_peak_at_chr5:56248155..56248156,+ | |description=CAGE_peak_at_chr5:56248155..56248156,+ | ||
|id=chr5:56248155..56248156,+ | |id=chr5:56248155..56248156,+ | ||
|ontology_enrichment_celltype=CL:0002166;2.95e-21;3!CL:0002159;1.04e-17;14!CL:0002591;1.41e-16;1!CL:0000575;5.93e-09;2!CL:0000771;5.93e-09;2!CL:0002077;8.85e-07;34 | |ontology_enrichment_celltype=CL:0002057!4.53e-15!42;CL:0000860!1.98e-14!45;CL:0002009!1.73e-09!65;CL:0002194!3.69e-09!63;CL:0000576!3.69e-09!63;CL:0000040!3.69e-09!63;CL:0000559!3.69e-09!63;CL:0002371!2.24e-08!591;CL:0000557!5.85e-08!71;CL:0000766!1.52e-07!76;CL:0000839!2.02e-07!70;CL:0000144!4.18e-07!625;CL:0000548!4.29e-07!679;CL:0000004!4.29e-07!679;CL:0000255!4.29e-07!679;CL:0000012!7.05e-07!682 | ||
| | |ontology_enrichment_celltype_v019=CL:0002166;2.95e-21;3!CL:0002159;1.04e-17;14!CL:0002591;1.41e-16;1!CL:0000575;5.93e-09;2!CL:0000771;5.93e-09;2!CL:0002077;8.85e-07;34 | ||
|ontology_enrichment_celltype_v019_2=CL:0002166,1.76e-21,3;CL:0002159,1.18e-17,14;CL:0002591,1.93e-16,1;CL:0000771,6.42e-09,2;CL:0000575,8.74e-09,2;CL:0002077,1.93e-07,34 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon=UBERON:0001708;3.32e-16;4!UBERON:0008895;3.32e-16;4!UBERON:0011159;3.65e-13;5!UBERON:0000078;5.93e-09;2!UBERON:0002012;5.93e-09;2!UBERON:0008886;5.93e-09;2!UBERON:0010313;4.95e-07;10 | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004765!2.03e-09!101;UBERON:0001434!2.03e-09!101;UBERON:0002371!3.04e-08!80;UBERON:0001474!3.26e-08!86;UBERON:0002204!1.50e-07!167 | |||
|ontology_enrichment_uberon_v019=UBERON:0001708;3.32e-16;4!UBERON:0008895;3.32e-16;4!UBERON:0011159;3.65e-13;5!UBERON:0000078;5.93e-09;2!UBERON:0002012;5.93e-09;2!UBERON:0008886;5.93e-09;2!UBERON:0010313;4.95e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010188,1.57e-23,6;UBERON:0002539,1.57e-23,6;UBERON:0008816,1.57e-23,6;UBERON:0001708,2.26e-16,4;UBERON:0008895,2.26e-16,4;UBERON:0011159,2.68e-13,5;UBERON:0000078,6.94e-09,2;UBERON:0007497,6.94e-09,2;UBERON:0003643,6.94e-09,2;UBERON:0003504,6.94e-09,2;UBERON:0003469,6.94e-09,2;UBERON:0003496,6.94e-09,2;UBERON:0002012,6.94e-09,2;UBERON:0008886,6.94e-09,2;UBERON:0007303,6.94e-09,2;UBERON:0002061,6.94e-09,2;UBERON:0005432,6.94e-09,2;UBERON:0004363,6.94e-09,2;UBERON:0008814,2.92e-08,18;UBERON:0000485,1.25e-07,9;UBERON:0010313,6.12e-07,10;UBERON:0002342,6.12e-07,10;UBERON:0005062,6.12e-07,10 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0.261185628199839,0.245733936501509,0.697801167972428,0.218441372130172,0.263766978228454,0,0,0,0,0.730310090387373,0.975865597581014,0,0,0,0.286235987131057,0,0,0,0,0,0,0,0.154816123316076,0,0.30120591877825,1.10926203050036,0,0,0,0,0,0,0,0,0.257575567634187,0.290796477559129,0.377875943688809,0.485168122375632,0.232429036905685,0.411167888021826,0.309706370895104,0,0,0.709446689665756,0.344745680736619,0,0,0.752969358170419,0.545812300115692,1.34834090667051,0.306083892370903,0,0,0.329851300186716,0,0.426224750532694,0,0.56738522469114,0.622822248995575,0.251248665256743,0.521482918420201,0.868755378820466,0,0.736555271975129,0.949387162322653,0,0,0.209658645508376,0.336985893439485,0.150176892841506,0.964353520182481,0,0.79566670879636,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0,0,0,0,0.289803085735052,0,0,0,0,0,0,0,0,0,0.950452044448374,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0,0,1.09288586487763,0,0,0,0,0,0,0,0,0,0,0,0,0,0.208994966536811,0,0,0,0,0,0.24406205754817,0.367663080345869,0,0,0,0,0,0,0,1.31780417436063,0,0,0.496971951695318,0,0.132409180813219,0,0.354668382198357,0,0,0,0,0.134710672069688,0,0.151357427644931,0,0,0,0,0.149448680551801,0,0,0,0,0,0.103325781175765,0,0,0,0,0.168336113954066,0,0,0,0,0,0,0,0,0,0.300091096084402,0.103052529238439,0.257640540045629,0,0,0.292311015483596,0,0,0,0,0.10075209822764,0.169560592310488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217879444092406,0.237270619111097,0,0.392442930250692,0.769494313892781,0,0,0,4.41026134156626,0,0,0,0,0.122988438543114,0,0,1.1240175325762,0.100528972411631,0.0925884451585296,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0.297262324577456,1.87467667973554,1.34385702559088,0.850650583454319,0,0.871901815541886,0.383382679165211,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0.224262168690721,0.43596006883328,0.1466765716419,0,0,0,0,0,0.771622122786426,1.41849132023278,0,0,0,0,0,0,0,0,0,0,0,0,0,0.479249710983165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0.157702415033935,0.117141414992713,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,0,0,0.604780586659361,0,0,0.280660094433074,0,0,0.160853921143607,0,0,0,0,0,0.116210378459959,0,0,0.368323955743585,0.114814448164607,0,0,0.451199612907412,0.231046011313244,0,1.46139224653261,0.105551628892876,0,0,0,1.54227252690289,0.541892875087706,0,0,0,0,0,0,0,0,0,0,0,0.082509499920588,0,0.650060246036521,0,0,0,0,0,0,0.435050081742686,0,0,0.165284915360978,0,0,0,0,0.62962469366128,0,0,0.532306030317022,0,0.18532421910392,0,0.372158369359667,0,0,0.511795582622668,0,0,0,0,0.54907405947211,0.117812402345686,0.202182481573316,0,0,0,0,0,0.136499911407986,0,1.13008116620243,0,0,0,0,0,0,0,0,0.143411352204052,0.196498082026242,0,0,0.211107635297664,0.329294892959902,0.75894634753143,0,0.0962221127255121,0.670302275535787,0,0,0.43050537267123,8.42357378338128,0.443430153536676,0.459446800413919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.324621940274555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.47748896947538,0,0,0,0,0,0.16480387422676,0,0.19924798825107,0,0,0,0,0,0.179736702294654,0,0,0,0,0,0,0,0,0,0.0874599999961957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31900115973192,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0.0870592065804026,0,0,0,0,0.0821154570532092,0,0,0,0,0,0,0,0,0,0.19980960958213,0.144090417154106,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223171457441873,0,0,0,0,0,0,0,0,0,0,0.160753148465019,0,0,0.449947783103001,0,0,0,0,0.104909176269996,0,0,0,0,0,0.25426853765475,0,0,0,0,0,0.170388021785422,0.113312091520126,0,0,0,0,0.171086837884329,0,0.106787412567695,0,0.414239055347196,0,0,0,0,0,0.2506898940227,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0,0,0,0,0,0,0,0,0.189403005275089,0,0,0,0,0.15543720058278,0.147855149989634,0,0.449803112163605,0,0.414706207840855,0,0,0,0.380805212168795,0,0,0.214821114084977,0,0,0,0,0,0,0.192619830407303,0,0.521988583930423,0.226705925512272,0,0,0,0.308801447160972,0,0.176689145945881,0,0.168942440653073,0,0,0,0,0.194860308839388,0,0.327130788511688,0,0,0,0,0,0,0,0.184105950251841,0.279759015438889,0,0,0,0,0,0,0,0,0,0.636008701306837,0,0,0.352675943690684,0,0,0,0,0,0,0,0,0,0.196295437002051,0,0,0.115525666150338,0,0,0,0,0,0,0,0,0.147856086217045,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177404740325278,0,0,0,0,0,0.111231401892069,0,0,0,0,0,0,0,0,0,0.173858272302579,0,0.414432328326074,0,0,0,0.118332000730565,0,0,0,0.62041277132864,0,0,0.098150233615243,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0999411559249289,0,0,0,0,0,0,0,0.0679914901909147,0,0,0,0,0,0.126166424835079,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0673520530145875,0.143444410785353,0,0.0814032686109745,0,0,0.0898252021065869,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0.261185628199839,0.245733936501509,0.697801167972428,0.218441372130172,0.263766978228454,0,0,0,0,0.730310090387373,0.975865597581014,0,0,0,0.286235987131057,0,0,0,0,0,0,0,0.154816123316076,0,0.30120591877825,1.10926203050036,0,0,0,0,0,0,0,0,0.257575567634187,0.290796477559129,0.377875943688809,0.485168122375632,0.232429036905685,0.411167888021826,0.309706370895104,0,0,0.709446689665756,0.344745680736619,0,0,0.752969358170419,0.545812300115692,1.34834090667051,0.306083892370903,0,0,0.329851300186716,0,0.426224750532694,0,0.56738522469114,0.622822248995575,0.251248665256743,0.521482918420201,0.868755378820466,0,0.736555271975129,0.949387162322653,0,0,0.209658645508376,0.336985893439485,0.150176892841506,0.964353520182481,0,0.79566670879636,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0,0,0,0,0.289803085735052,0,0,0,0,0,0,0,0,0,0.950452044448374,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0,0,1.09288586487763,0,0,0,0,0,0,0,0,0,0,0,0,0,0.208994966536811,0,0,0,0,0,0.24406205754817,0.367663080345869,0,0,0,0,0,0,0,1.31780417436063,0,0,0.496971951695318,0,0.132409180813219,0,0.354668382198357,0,0,0,0,0.134710672069688,0,0.151357427644931,0,0,0,0,0.149448680551801,0,0,0,0,0,0.103325781175765,0,0,0,0,0.168336113954066,0,0,0,0,0,0,0,0,0,0.300091096084402,0.103052529238439,0.257640540045629,0,0,0.292311015483596,0,0,0,0,0.10075209822764,0.169560592310488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217879444092406,0.237270619111097,0,0.392442930250692,0.769494313892781,0,0,0,4.41026134156626,0,0,0,0,0.122988438543114,0,0,1.1240175325762,0.100528972411631,0.0925884451585296,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0.297262324577456,1.87467667973554,1.34385702559088,0.850650583454319,0,0.871901815541886,0.383382679165211,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0.224262168690721,0.43596006883328,0.1466765716419,0,0,0,0,0,0.771622122786426,1.41849132023278,0,0,0,0,0,0,0,0,0,0,0,0,0,0.479249710983165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0.157702415033935,0.117141414992713,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,0,0,0.604780586659361,0,0,0.280660094433074,0,0,0.160853921143607,0,0,0,0,0,0.116210378459959,0,0,0.368323955743585,0.114814448164607,0,0,0.451199612907412,0.231046011313244,0,1.46139224653261,0.105551628892876,0,0,0,1.54227252690289,0.541892875087706,0,0,0,0,0,0,0,0,0,0,0,0.082509499920588,0,0.650060246036521,0,0,0,0,0,0,0.435050081742686,0,0,0.165284915360978,0,0,0,0,0.62962469366128,0,0,0.532306030317022,0,0.18532421910392,0,0.372158369359667,0,0,0.511795582622668,0,0,0,0,0.54907405947211,0.117812402345686,0.202182481573316,0,0,0,0,0,0.136499911407986,0,1.13008116620243,0,0,0,0,0,0,0,0,0.143411352204052,0.196498082026242,0,0,0.211107635297664,0.329294892959902,0.75894634753143,0,0.0962221127255121,0.670302275535787,0,0,0.43050537267123,8.42357378338128,0.443430153536676,0.459446800413919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.324621940274555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.47748896947538,0,0,0,0,0,0.16480387422676,0,0.19924798825107,0,0,0,0,0,0.179736702294654,0,0,0,0,0,0,0,0,0,0.0874599999961957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31900115973192,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0.0870592065804026,0,0,0,0,0.0821154570532092,0,0,0,0,0,0,0,0,0,0.19980960958213,0.144090417154106,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223171457441873,0,0,0,0,0,0,0,0,0,0,0.160753148465019,0,0,0.449947783103001,0,0,0,0,0.104909176269996,0,0,0,0,0,0.25426853765475,0,0,0,0,0,0.170388021785422,0.113312091520126,0,0,0,0,0.171086837884329,0,0.106787412567695,0,0.414239055347196,0,0,0,0,0,0.2506898940227,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0,0,0,0,0,0,0,0,0.189403005275089,0,0,0,0,0.15543720058278,0.147855149989634,0,0.449803112163605,0,0.414706207840855,0,0,0,0.380805212168795,0,0,0.214821114084977,0,0,0,0,0,0,0.192619830407303,0,0.521988583930423,0.226705925512272,0,0,0,0.308801447160972,0,0.176689145945881,0,0.168942440653073,0,0,0,0,0.194860308839388,0,0.327130788511688,0,0,0,0,0,0,0,0.184105950251841,0.279759015438889,0,0,0,0,0,0,0,0,0,0.636008701306837,0,0,0.352675943690684,0,0,0,0,0,0,0,0,0,0.196295437002051,0,0,0.115525666150338,0,0,0,0,0,0,0,0,0.147856086217045,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177404740325278,0,0,0,0,0,0.111231401892069,0,0,0,0,0,0,0,0,0,0.173858272302579,0,0.414432328326074,0,0,0,0.118332000730565,0,0,0,0.62041277132864,0,0,0.098150233615243,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0999411559249289,0,0,0,0,0,0,0,0.0679914901909147,0,0,0,0,0,0.126166424835079,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0673520530145875,0.143444410785353,0,0.0814032686109745,0,0,0.0898252021065869,0,0,0,0,0,0 | ||
|short_description=p@chr5:56248155..56248156,+ | |short_description=p@chr5:56248155..56248156,+ | ||
}} | }} |
Latest revision as of 15:23, 30 July 2015
Short description: | p@chr5:56248155..56248156, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr5:56248155..56248156, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of Malassez | 1.76e-21 | 3 |
general ecto-epithelial cell | 1.18e-17 | 14 |
smooth muscle cell of the pulmonary artery | 1.93e-16 | 1 |
eosinophil | 6.42e-09 | 2 |
corneal epithelial cell | 8.74e-09 | 2 |
ecto-epithelial cell | 1.93e-07 | 34 |
Ontology term | p-value | n |
---|---|---|
protuberance | 1.57e-23 | 6 |
pharyngeal arch | 1.57e-23 | 6 |
embryonic head | 1.57e-23 | 6 |
jaw skeleton | 2.26e-16 | 4 |
splanchnocranium | 2.26e-16 | 4 |
primary subdivision of cranial skeletal system | 2.68e-13 | 5 |
mixed ectoderm/mesoderm/endoderm-derived structure | 6.94e-09 | 2 |
developing epithelial placode | 6.94e-09 | 2 |
respiratory system arterial blood vessel | 6.94e-09 | 2 |
respiratory system blood vessel | 6.94e-09 | 2 |
respiratory system artery | 6.94e-09 | 2 |
head blood vessel | 6.94e-09 | 2 |
pulmonary artery | 6.94e-09 | 2 |
pulmonary vascular system | 6.94e-09 | 2 |
pharyngeal vasculature | 6.94e-09 | 2 |
truncus arteriosus | 6.94e-09 | 2 |
aortic sac | 6.94e-09 | 2 |
pharyngeal arch artery | 6.94e-09 | 2 |
pharyngeal arch system | 2.92e-08 | 18 |
simple columnar epithelium | 1.25e-07 | 9 |
neural crest-derived structure | 6.12e-07 | 10 |
neural crest | 6.12e-07 | 10 |
neural fold | 6.12e-07 | 10 |