FFCP PHASE1:Hg19::chr6:135505482..135505486,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr6:135505482..135505486,+ | |||
|coexpression_cluster_id=C1970 | |coexpression_cluster_id=C1970 | ||
|description=CAGE_peak_at_chr6:135505482..135505486,+ | |description=CAGE_peak_at_chr6:135505482..135505486,+ | ||
|id=chr6:135505482..135505486,+ | |id=chr6:135505482..135505486,+ | ||
|ontology_enrichment_celltype=CL:0000988!3.64e-32!182;CL:0000037!2.14e-31!172;CL:0000566!2.14e-31!172;CL:0002032!8.40e-28!165;CL:0000837!8.40e-28!165;CL:0000763!2.16e-20!112;CL:0000049!2.16e-20!112;CL:0000738!9.29e-12!140;CL:0002031!1.20e-09!124;CL:0002274!1.57e-07!5;CL:0000457!1.57e-07!5;CL:0002191!1.57e-07!5;CL:0000097!1.57e-07!5;CL:0000831!1.57e-07!5;CL:0002028!1.57e-07!5;CL:0000542!3.37e-07!53;CL:0000051!3.37e-07!53 | |ontology_enrichment_celltype=CL:0000988!3.64e-32!182;CL:0000037!2.14e-31!172;CL:0000566!2.14e-31!172;CL:0002032!8.40e-28!165;CL:0000837!8.40e-28!165;CL:0000763!2.16e-20!112;CL:0000049!2.16e-20!112;CL:0000738!9.29e-12!140;CL:0002031!1.20e-09!124;CL:0002274!1.57e-07!5;CL:0000457!1.57e-07!5;CL:0002191!1.57e-07!5;CL:0000097!1.57e-07!5;CL:0000831!1.57e-07!5;CL:0002028!1.57e-07!5;CL:0000542!3.37e-07!53;CL:0000051!3.37e-07!53 | ||
|ontology_enrichment_celltype_v019=CL:0000784;1.02e-09;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,5.15e-19,177;CL:0000037,7.07e-15,168;CL:0000763,2.08e-14,108;CL:0000049,2.08e-14,108;CL:0002032,4.14e-14,161;CL:0000837,4.14e-14,161;CL:0000784,8.58e-10,3 | |||
|ontology_enrichment_development_v019=UBERON:0005425;6.62e-08;1 | |||
|ontology_enrichment_disease=DOID:2531!3.44e-49!51;DOID:0060083!3.44e-49!51;DOID:1240!1.71e-45!39;DOID:8692!2.74e-35!31;DOID:0050686!3.39e-17!137;DOID:1036!5.59e-12!8;DOID:0060058!3.57e-10!10;DOID:162!2.16e-09!235;DOID:14566!7.42e-09!239 | |ontology_enrichment_disease=DOID:2531!3.44e-49!51;DOID:0060083!3.44e-49!51;DOID:1240!1.71e-45!39;DOID:8692!2.74e-35!31;DOID:0050686!3.39e-17!137;DOID:1036!5.59e-12!8;DOID:0060058!3.57e-10!10;DOID:162!2.16e-09!235;DOID:14566!7.42e-09!239 | ||
|ontology_enrichment_disease_v019=DOID:1240;1.37e-46;39!DOID:8692;3.13e-44;31!DOID:2531;2.67e-27;51!DOID:0060083;2.67e-27;51!DOID:1036;6.10e-08;8!DOID:225;6.62e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:1240,4.70e-58,39;DOID:8692,9.83e-46,31;DOID:2531,1.57e-43,51;DOID:0060083,1.57e-43,51;DOID:0050686,1.01e-13,137;DOID:225,6.19e-08,1;DOID:1036,7.77e-08,8 | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0000941;6.62e-08;1!UBERON:0001785;6.62e-08;1!UBERON:0002464;6.62e-08;1!UBERON:0004904;6.62e-08;1!UBERON:0001021;6.62e-08;1!UBERON:0002331;7.38e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000941,6.63e-08,1;UBERON:0001785,6.63e-08,1;UBERON:0002464,6.63e-08,1;UBERON:0004904,6.63e-08,1;UBERON:0001021,6.63e-08,1;UBERON:0003902,6.63e-08,1;UBERON:0005425,6.63e-08,1;UBERON:0002331,7.17e-07,10;UBERON:0000358,7.17e-07,10;UBERON:0000307,7.17e-07,10;UBERON:0000091,7.17e-07,10;UBERON:0000087,7.17e-07,10;UBERON:0007010,7.17e-07,10;UBERON:0007806,7.17e-07,10;UBERON:0008780,7.17e-07,10;UBERON:0005728,7.17e-07,10 | |||
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| ||
|short_description=p@chr6:135505482..135505486,+ | |short_description=p@chr6:135505482..135505486,+ | ||
}} | }} |
Latest revision as of 19:46, 30 July 2015
Short description: | p@chr6:135505482..135505486, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr6:135505482..135505486, + |
Coexpression cluster: | C1970_biphenotypic_acute_non_chronic_myelodysplastic_cord_Hodgkin |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 5.15e-19 | 177 |
hematopoietic stem cell | 7.07e-15 | 168 |
myeloid cell | 2.08e-14 | 108 |
common myeloid progenitor | 2.08e-14 | 108 |
hematopoietic oligopotent progenitor cell | 4.14e-14 | 161 |
hematopoietic multipotent progenitor cell | 4.14e-14 | 161 |
plasmacytoid dendritic cell | 8.58e-10 | 3 |
Ontology term | p-value | n |
---|---|---|
cranial nerve II | 6.63e-08 | 1 |
cranial nerve | 6.63e-08 | 1 |
nerve trunk | 6.63e-08 | 1 |
nerve connecting eye with brain | 6.63e-08 | 1 |
nerve | 6.63e-08 | 1 |
retinal neural layer | 6.63e-08 | 1 |
presumptive neural retina | 6.63e-08 | 1 |
umbilical cord | 7.17e-07 | 10 |
blastocyst | 7.17e-07 | 10 |
blastula | 7.17e-07 | 10 |
bilaminar disc | 7.17e-07 | 10 |
inner cell mass | 7.17e-07 | 10 |
cleaving embryo | 7.17e-07 | 10 |
connecting stalk | 7.17e-07 | 10 |
inner cell mass derived epiblast | 7.17e-07 | 10 |
extraembryonic mesoderm | 7.17e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
leukemia | 4.70e-58 | 39 |
myeloid leukemia | 9.83e-46 | 31 |
hematologic cancer | 1.57e-43 | 51 |
immune system cancer | 1.57e-43 | 51 |
organ system cancer | 1.01e-13 | 137 |
syndrome | 6.19e-08 | 1 |
chronic leukemia | 7.77e-08 | 8 |