FFCP PHASE1:Hg19::chr5:149492944..149492966,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1436 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2433 | |||
|TSSclassifier=strong | |||
|UniProt=P07333,D6RGW1 | |||
|association_with_transcript=-9bp_to_ENST00000286301,ENST00000511344,NM_005211,uc003lrm.2_5end | |||
|cluster_id=chr5:149492944..149492966,- | |||
|coexpression_cluster_id=C50 | |||
|description=CAGE_peak_4_at_CSF1R_5end | |||
|id=chr5:149492944..149492966,- | |||
|ontology_enrichment_celltype=CL:0002541!5.79e-09!3;CL:0000349!1.46e-08!3;CL:0002577!1.46e-08!3;CL:0000128!1.31e-07!7;CL:0000126!1.31e-07!7;CL:0000127!1.31e-07!7;CL:0002453!1.31e-07!7;CL:0002251!1.90e-07!21;CL:0000064!2.55e-07!3;CL:0005012!2.55e-07!3;CL:0000067!2.55e-07!3;CL:0002304!2.55e-07!3;CL:0002603!3.33e-07!3;CL:0000243!7.13e-07!15;CL:0000125!7.13e-07!15;CL:0000030!7.13e-07!15;CL:0000339!7.13e-07!15 | |||
|ontology_enrichment_celltype_v019=CL:0000349;7.63e-41;19!CL:0002541;1.05e-21;3!CL:0002577;1.22e-20;3!CL:0002536;1.08e-14;2!CL:0001014;4.94e-14;2!CL:0001016;4.94e-14;2!CL:0002537;2.58e-12;5!CL:0002586;9.80e-10;3!CL:0000039;2.41e-09;7!CL:0000586;2.41e-09;7!CL:0000149;1.64e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,8.25e-41,19;CL:0002541,1.05e-21,3;CL:0002577,1.31e-20,3;CL:0002536,1.04e-14,2;CL:0001014,6.03e-14,2;CL:0001016,6.03e-14,2;CL:0002537,2.74e-12,5;CL:0002586,8.97e-10,3;CL:0000039,2.18e-09,7;CL:0000586,2.18e-09,7;CL:0000149,1.54e-07,4 | |||
|ontology_enrichment_development_v019=UBERON:0003124;1.77e-08;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:1799;2.90e-08;1!DOID:10165;2.90e-08;1!DOID:1798;2.90e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:1799,2.90e-08,1;DOID:10165,2.90e-08,1;DOID:1798,2.90e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0005631!5.81e-25!14;UBERON:0000158!5.81e-25!14;UBERON:0003124!2.78e-18!7;UBERON:0004923!2.17e-15!57;UBERON:0000478!3.32e-13!24;UBERON:0001987!5.05e-11!4;UBERON:0004340!5.05e-11!4;UBERON:0000305!3.35e-09!7;UBERON:0000476!5.79e-09!3;UBERON:0000920!5.79e-09!3;UBERON:0000344!8.86e-09!12;UBERON:0000064!2.02e-08!219;UBERON:0004871!5.53e-08!8;UBERON:0003350!9.91e-08!5;UBERON:0001778!2.55e-07!3;UBERON:0001775!2.55e-07!3;UBERON:0007625!4.90e-07!11;UBERON:0000020!9.29e-07!23 | |||
|ontology_enrichment_uberon_v019=UBERON:0005631;3.74e-42;10!UBERON:0000158;3.74e-42;10!UBERON:0000478;2.83e-38;24!UBERON:0001987;2.36e-27;4!UBERON:0000305;1.44e-23;7!UBERON:0003124;1.05e-21;3!UBERON:0000920;1.05e-21;3!UBERON:0000966;1.35e-12;5!UBERON:0005388;1.35e-12;5!UBERON:0001802;1.35e-12;5!UBERON:0001781;9.80e-10;3!UBERON:0001782;9.80e-10;3!UBERON:0004923;5.70e-07;55 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,4.20e-67,14;UBERON:0000158,4.20e-67,14;UBERON:0003124,3.12e-47,7;UBERON:0000478,3.03e-38,24;UBERON:0001987,2.52e-27,4;UBERON:0004340,2.52e-27,4;UBERON:0000305,1.51e-23,7;UBERON:0000920,1.05e-21,3;UBERON:0004871,1.36e-20,8;UBERON:0004923,5.98e-20,66;UBERON:0000966,1.30e-10,6;UBERON:0005388,1.30e-10,6;UBERON:0001802,1.30e-10,6;UBERON:0001782,8.97e-10,3;UBERON:0005424,8.97e-10,3;UBERON:0001781,1.54e-07,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,11.1405099786388,8.96807725976742,0,0,0,0,0,0,0.123121058076788,0.204000691244253,0.313454721478088,0,0.273748850145768,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0.886917589850256,0.263504357079378,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149448680551801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300091096084402,0,0,0,0,0,0,0,0,0.355009592516614,0,0,0.193260853163297,0.272746120590835,0,0.121973706129595,0,0.116193942869518,0.414644220061482,0,0,0,0,0,0,0,0,0,0.241011029883482,0.110293972732394,0,0,0.134831308160164,0,0,0,0,0,0,0,0,0,0,4.67356066463832,0,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,1.51183915378974,0,0,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.12189300012382,3.32870879020994,6.04780586659361,0,0,0,0,0,0,0,0,0.177561725313127,0,0,0,1.93375119346596,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.64007322849853,4.55529752530024,23.8024736906238,0,0,0,0,0,0.096670718292122,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,23.3476625926412,0,0,0,0.459446800413919,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.81991175580304,1.18785872333055,1.22864280839693,0,0.140669416410513,0,0,0,0,0,0,0.102268682502155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.709163045303809,0,0,0,0,0,0,0,0,0,0,0,0,0,15.217217689612,24.8628675015069,1.73835795075213,18.5020672644513,13.1900534498682,67.162381778348,0,0,0,0,0,0,0,0,0,0.163232808159148,0.848118428603645,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,0,0,0.664653872707185,0,0,0,0.284609546029793,0,0,0.0979923974143777,0.261177619741208,0,0,0,0,0,0,0,1.58186518546373,0,0,0,0,0.0801588202515337,0,0.19980960958213,0,0,0,0,0,0.235694034616795,0.135904206073614,0.104602846312333,0,0.288950589901519,0,0,0,0,0,0,0,0,0,0,0,0,0.360299883542404,1.16495949527454,0,0,0,0,0,0,0,0,0,0,1.1248694577575,2.32140586367385,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15543720058278,0,0,0,0,0,0,0.521745061811734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.3062454773532,0,0,0,0,0,0,0,0,0.88332946650923,0,0.366857197043358,0.577628330751691,0,0,0,0,1.0085253435176,0,12.5715213351083,0,0.147856086217045,0,0,0,0,0,0,0,0,0,8.57122937405259,0.672567444437648,0.606965604236632,0,49.2298154402646,0,0,0.0679697329768317,0,0,0,0,0,0,0,0,0,9.22047419878867,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.339854229375634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.643264296743914,0,0,0.267964130156178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0814032686109745,0,0,0,0,0,0,0,0,0 | |||
|short_description=p4@CSF1R | |||
}} |
Latest revision as of 02:52, 16 September 2015
Short description: | p4@CSF1R |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_CSF1R_5end |
Coexpression cluster: | C50_chorionic_placenta_amniotic_migratory_smallcell_chronic_choriocarcinoma |
Association with transcript: | -9bp_to_ENST00000286301, ENST00000511344, NM_005211, uc003lrm.2_5end |
EntrezGene: | CSF1R |
HGNC: | 2433 |
UniProt: | P07333D6RGW1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 8.25e-41 | 19 |
chorionic membrane mesenchymal stem cell | 1.05e-21 | 3 |
placental epithelial cell | 1.31e-20 | 3 |
amniotic epithelial cell | 1.04e-14 | 2 |
CD1a-positive Langerhans cell | 6.03e-14 | 2 |
immature CD1a-positive Langerhans cell | 6.03e-14 | 2 |
amnion mesenchymal stem cell | 2.74e-12 | 5 |
retinal pigment epithelial cell | 8.97e-10 | 3 |
germ line cell | 2.18e-09 | 7 |
germ cell | 2.18e-09 | 7 |
visual pigment cell | 1.54e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 4.20e-67 | 14 |
membranous layer | 4.20e-67 | 14 |
chorion | 3.12e-47 | 7 |
extraembryonic structure | 3.03e-38 | 24 |
placenta | 2.52e-27 | 4 |
allantois | 2.52e-27 | 4 |
amnion | 1.51e-23 | 7 |
egg chorion | 1.05e-21 | 3 |
somatic layer of lateral plate mesoderm | 1.36e-20 | 8 |
organ component layer | 5.98e-20 | 66 |
retina | 1.30e-10 | 6 |
photoreceptor array | 1.30e-10 | 6 |
posterior segment of eyeball | 1.30e-10 | 6 |
pigmented layer of retina | 8.97e-10 | 3 |
presumptive retinal pigmented epithelium | 8.97e-10 | 3 |
layer of retina | 1.54e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
islet cell tumor | 2.90e-08 | 1 |
endocrine pancreas cancer | 2.90e-08 | 1 |
pancreatic endocrine carcinoma | 2.90e-08 | 1 |