FFCP PHASE1:Hg19::chr20:388993..389028,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10616 | |EntrezGene=10616 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15864 | |HGNC=15864 | ||
|TSSclassifier=strong | |||
|UniProt=A6PVJ5 | |UniProt=A6PVJ5 | ||
|association_with_transcript=6bp_to_ENST00000400247_5end | |association_with_transcript=6bp_to_ENST00000400247_5end | ||
|cluster_id=chr20:388993..389028,+ | |||
|coexpression_cluster_id=C4033 | |||
|description=CAGE_peak_3_at_RBCK1_5end | |description=CAGE_peak_3_at_RBCK1_5end | ||
|id=chr20:388993..389028,+ | |id=chr20:388993..389028,+ | ||
|ontology_enrichment_celltype=CL:0002371!2.52e-13!591;CL:0000066!3.61e-13!254;CL:0000548!5.58e-13!679;CL:0000004!5.58e-13!679;CL:0000255!5.58e-13!679;CL:0000012!1.31e-12!682;CL:0000003!1.81e-12!722;CL:0000063!3.00e-12!578;CL:0000223!6.94e-12!59;CL:0000220!1.30e-11!246;CL:0002321!7.37e-11!248;CL:0000144!4.49e-10!625;CL:0002076!7.80e-09!43;CL:0000076!7.03e-07!62 | |ontology_enrichment_celltype=CL:0002371!2.52e-13!591;CL:0000066!3.61e-13!254;CL:0000548!5.58e-13!679;CL:0000004!5.58e-13!679;CL:0000255!5.58e-13!679;CL:0000012!1.31e-12!682;CL:0000003!1.81e-12!722;CL:0000063!3.00e-12!578;CL:0000223!6.94e-12!59;CL:0000220!1.30e-11!246;CL:0002321!7.37e-11!248;CL:0000144!4.49e-10!625;CL:0002076!7.80e-09!43;CL:0000076!7.03e-07!62 | ||
|ontology_enrichment_celltype_v019=CL:0002076;3.03e-07;42 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,3.75e-13,253;CL:0000223,1.08e-11,58;CL:0002321,3.17e-11,250;CL:0002076,1.12e-08,42;CL:0000076,4.46e-07,63 | |||
|ontology_enrichment_development_v019=CL:0000223;9.77e-08;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003914!3.79e-12!118;UBERON:0000490!1.99e-10!138;UBERON:0005256!2.16e-10!143;UBERON:0005911!2.07e-09!82;UBERON:0002100!2.96e-09!216;UBERON:0003929!3.73e-09!54;UBERON:0004119!5.25e-09!169;UBERON:0000925!5.25e-09!169;UBERON:0006595!5.25e-09!169;UBERON:0003104!1.12e-08!238;UBERON:0009142!1.12e-08!238;UBERON:0000926!7.20e-08!448;UBERON:0004120!7.20e-08!448;UBERON:0006603!7.20e-08!448 | |||
|ontology_enrichment_uberon_v019=UBERON:0002423;7.39e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003914,6.25e-12,117;UBERON:0000490,4.30e-11,148;UBERON:0002100,3.71e-10,199;UBERON:0005911,1.62e-09,82;UBERON:0003104,2.59e-09,160;UBERON:0009142,2.59e-09,160;UBERON:0003929,3.32e-09,54;UBERON:0005256,6.14e-09,122;UBERON:0004119,3.72e-08,160;UBERON:0000925,3.72e-08,160;UBERON:0006595,3.72e-08,160;UBERON:0005177,6.81e-07,101 | |||
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| ||
|short_description=p3@RBCK1 | |short_description=p3@RBCK1 | ||
}} | }} |
Latest revision as of 04:57, 16 September 2015
Short description: | p3@RBCK1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_RBCK1_5end |
Coexpression cluster: | C4033_Bronchial_bile_renal_signet_Keratinocyte_hepatoma_squamous |
Association with transcript: | 6bp_to_ENST00000400247_5end |
EntrezGene: | RBCK1 |
HGNC: | 15864 |
UniProt: | A6PVJ5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 3.75e-13 | 253 |
endodermal cell | 1.08e-11 | 58 |
embryonic cell | 3.17e-11 | 250 |
endo-epithelial cell | 1.12e-08 | 42 |
squamous epithelial cell | 4.46e-07 | 63 |
Ontology term | p-value | n |
---|---|---|
epithelial tube | 6.25e-12 | 117 |
unilaminar epithelium | 4.30e-11 | 148 |
trunk | 3.71e-10 | 199 |
endo-epithelium | 1.62e-09 | 82 |
mesenchyme | 2.59e-09 | 160 |
entire embryonic mesenchyme | 2.59e-09 | 160 |
gut epithelium | 3.32e-09 | 54 |
trunk mesenchyme | 6.14e-09 | 122 |
endoderm-derived structure | 3.72e-08 | 160 |
endoderm | 3.72e-08 | 160 |
presumptive endoderm | 3.72e-08 | 160 |
trunk region element | 6.81e-07 | 101 |