FFCP PHASE1:Hg19::chr20:42875893..42875921,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr20:42875893..42875921,+ to FFCP PHASE1:Hg19::chr20:42875893..42875921,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=78997 | |EntrezGene=78997 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4213 | |HGNC=4213 | ||
|TSSclassifier=strong | |||
|UniProt=F8W7N4,B7Z1I3,E7ENJ1,Q96MZ0,Q5JY50 | |UniProt=F8W7N4,B7Z1I3,E7ENJ1,Q96MZ0,Q5JY50 | ||
|association_with_transcript=0bp_to_ENST00000262604,ENST00000372946,ENST00000372947,ENST00000545149,NM_024034,uc002xlp.1,uc002xlq.2,uc010zwl.1,uc010zwm.1,uc010zwn.1_5end | |||
|cluster_id=chr20:42875893..42875921,+ | |||
|coexpression_cluster_id=C2114 | |||
|description=CAGE_peak_2_at_GDAP1L1_5end | |||
|id=chr20:42875893..42875921,+ | |||
|ontology_enrichment_celltype=CL:0000047!1.12e-12!8;CL:0000540!3.49e-10!6;CL:0000031!3.49e-10!6;CL:0000404!3.49e-10!6;CL:0002322!1.08e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:0002322;2.14e-07;5!CL:0000540;2.39e-07;6!CL:0000404;2.39e-07;6!CL:0002321;3.56e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,4.74e-08,8;CL:0000540,2.24e-07,6;CL:0000031,2.24e-07,6;CL:0000404,2.24e-07,6;CL:0002322,3.09e-07,5 | |||
|ontology_enrichment_development_v019=UBERON:0006601;9.63e-20;82!UBERON:0006215;7.87e-09;3!CL:0000031;2.39e-07;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:169;2.66e-07;6 | |||
|ontology_enrichment_disease_v019_2=DOID:169,2.39e-07,6 | |||
|ontology_enrichment_uberon=UBERON:0001017!8.59e-78!82;UBERON:0005743!1.14e-75!86;UBERON:0000073!2.48e-74!94;UBERON:0001016!2.48e-74!94;UBERON:0001049!4.60e-70!57;UBERON:0005068!4.60e-70!57;UBERON:0006241!4.60e-70!57;UBERON:0007135!4.60e-70!57;UBERON:0000955!3.01e-59!69;UBERON:0006238!3.01e-59!69;UBERON:0002616!5.55e-59!59;UBERON:0002780!4.84e-53!41;UBERON:0001890!4.84e-53!41;UBERON:0006240!4.84e-53!41;UBERON:0003080!1.72e-51!42;UBERON:0002346!5.56e-49!90;UBERON:0003075!1.70e-48!86;UBERON:0007284!1.70e-48!86;UBERON:0001893!5.73e-43!34;UBERON:0002020!8.10e-43!34;UBERON:0003528!8.10e-43!34;UBERON:0002791!2.77e-41!33;UBERON:0001869!1.79e-40!32;UBERON:0000924!1.48e-36!173;UBERON:0006601!1.48e-36!173;UBERON:0004121!1.26e-35!169;UBERON:0003056!1.64e-35!61;UBERON:0002619!2.93e-35!22;UBERON:0007023!3.08e-34!115;UBERON:0001950!2.35e-32!20;UBERON:0000956!2.76e-30!25;UBERON:0000203!2.76e-30!25;UBERON:0000033!1.31e-28!123;UBERON:0000153!1.71e-26!129;UBERON:0007811!1.71e-26!129;UBERON:0003076!8.06e-19!15;UBERON:0003057!8.06e-19!15;UBERON:0004733!5.41e-15!12;UBERON:0002028!5.41e-15!12;UBERON:0007277!5.41e-15!12;UBERON:0002420!2.59e-14!9;UBERON:0007245!2.59e-14!9;UBERON:0010009!2.59e-14!9;UBERON:0010011!2.59e-14!9;UBERON:0000454!2.59e-14!9;UBERON:0002308!6.80e-14!9;UBERON:0000125!6.80e-14!9;UBERON:0004732!1.29e-13!13;UBERON:0000025!1.29e-13!194;UBERON:0001894!2.63e-11!7;UBERON:0006222!2.63e-11!7;UBERON:0000200!2.81e-11!6;UBERON:0009663!3.80e-11!7;UBERON:0001871!3.87e-11!7;UBERON:0002680!4.76e-11!9;UBERON:0001895!4.76e-11!9;UBERON:0010092!4.76e-11!9;UBERON:0001872!6.78e-10!5;UBERON:0002021!6.90e-10!5;UBERON:0002298!1.58e-09!8;UBERON:0000349!3.33e-09!5;UBERON:0004111!5.13e-09!241;UBERON:0000064!8.78e-09!219;UBERON:0000369!1.86e-07!4;UBERON:0002435!1.86e-07!4;UBERON:0000204!1.86e-07!4;UBERON:0010082!1.86e-07!4;UBERON:0000483!2.02e-07!309;UBERON:0003296!2.77e-07!4;UBERON:0010133!2.77e-07!4;UBERON:0000922!3.07e-07!612;UBERON:0000119!3.36e-07!312;UBERON:0002037!7.49e-07!6;UBERON:0006215!7.49e-07!6 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;1.30e-54;32!UBERON:0002780;3.56e-54;41!UBERON:0001890;3.56e-54;41!UBERON:0001893;5.53e-53;34!UBERON:0002619;1.28e-52;22!UBERON:0003528;2.54e-52;34!UBERON:0002020;2.54e-52;34!UBERON:0000073;5.42e-51;53!UBERON:0002616;5.42e-51;53!UBERON:0002791;6.30e-51;32!UBERON:0001950;3.35e-48;20!UBERON:0000956;9.03e-46;25!UBERON:0000203;9.03e-46;25!UBERON:0000955;4.14e-37;68!UBERON:0001017;5.17e-34;75!UBERON:0001016;2.99e-30;83!UBERON:0002420;6.77e-17;9!UBERON:0007245;6.77e-17;9!UBERON:0010009;6.77e-17;9!UBERON:0010011;6.77e-17;9!UBERON:0000454;6.77e-17;9!UBERON:0000125;2.55e-16;9!UBERON:0002308;2.55e-16;9!UBERON:0000200;3.58e-16;6!UBERON:0001894;3.82e-16;7!UBERON:0004733;1.95e-15;12!UBERON:0002028;1.95e-15;12!UBERON:0004732;4.14e-14;13!UBERON:0001872;4.17e-14;5!UBERON:0002298;4.41e-14;6!UBERON:0002021;4.76e-14;5!UBERON:0001871;7.55e-14;6!UBERON:0000349;4.07e-13;5!UBERON:0007023;2.05e-12;114!UBERON:0009663;2.90e-12;7!UBERON:0011216;1.40e-11;132!UBERON:0000369;1.58e-10;4!UBERON:0002435;1.58e-10;4!UBERON:0000204;1.58e-10;4!UBERON:0003296;3.78e-10;4!UBERON:0010133;3.78e-10;4!UBERON:0002784;5.54e-10;4!UBERON:0002680;6.48e-10;9!UBERON:0001895;6.48e-10;9!UBERON:0001870;7.66e-09;3!UBERON:0005383;3.40e-08;3!UBERON:0005382;3.40e-08;3!UBERON:0000988;4.01e-08;3!UBERON:0001896;1.24e-07;3!UBERON:0005290;1.24e-07;3!UBERON:0010314;1.65e-07;132 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,2.13e-93,56;UBERON:0005068,2.13e-93,56;UBERON:0006241,2.13e-93,56;UBERON:0007135,2.13e-93,56;UBERON:0001017,2.11e-92,81;UBERON:0001016,3.33e-92,89;UBERON:0000073,5.19e-91,53;UBERON:0002616,5.19e-91,53;UBERON:0000955,3.64e-81,68;UBERON:0006238,3.64e-81,68;UBERON:0002780,2.55e-76,41;UBERON:0001890,2.55e-76,41;UBERON:0003080,2.55e-76,41;UBERON:0006240,2.55e-76,41;UBERON:0003075,1.07e-62,82;UBERON:0007284,1.07e-62,82;UBERON:0001869,3.07e-61,32;UBERON:0001893,3.79e-61,34;UBERON:0003528,6.32e-61,34;UBERON:0002020,6.32e-61,34;UBERON:0002346,3.45e-59,86;UBERON:0002791,1.18e-56,32;UBERON:0002619,1.19e-52,22;UBERON:0003056,5.20e-51,61;UBERON:0001950,2.93e-48,20;UBERON:0010371,1.01e-46,104;UBERON:0000956,8.48e-46,25;UBERON:0000203,8.48e-46,25;UBERON:0004121,2.34e-41,171;UBERON:0000924,2.34e-41,171;UBERON:0006601,2.34e-41,171;UBERON:0007023,7.82e-38,114;UBERON:0010314,7.31e-36,132;UBERON:0011216,5.31e-35,223;UBERON:0000025,9.07e-22,192;UBERON:0003076,7.22e-18,15;UBERON:0003057,7.22e-18,15;UBERON:0002420,8.91e-17,9;UBERON:0007245,8.91e-17,9;UBERON:0010009,8.91e-17,9;UBERON:0010011,8.91e-17,9;UBERON:0000454,8.91e-17,9;UBERON:0001894,3.23e-16,7;UBERON:0006222,3.23e-16,7;UBERON:0000125,3.26e-16,9;UBERON:0002308,3.26e-16,9;UBERON:0000200,3.58e-16,6;UBERON:0004733,1.62e-15,12;UBERON:0002028,1.62e-15,12;UBERON:0007277,1.62e-15,12;UBERON:0004111,7.92e-15,240;UBERON:0004732,3.48e-14,13;UBERON:0002298,3.55e-14,6;UBERON:0001872,4.29e-14,5;UBERON:0002021,4.40e-14,5;UBERON:0001871,7.39e-14,6;UBERON:0000349,4.69e-13,5;UBERON:0009663,3.84e-12,7;UBERON:0000369,1.96e-10,4;UBERON:0002435,1.96e-10,4;UBERON:0000204,1.96e-10,4;UBERON:0010082,1.96e-10,4;UBERON:0003296,3.56e-10,4;UBERON:0010133,3.56e-10,4;UBERON:0002784,4.90e-10,4;UBERON:0002680,5.74e-10,9;UBERON:0001895,5.74e-10,9;UBERON:0010092,5.74e-10,9;UBERON:0000483,1.38e-09,306;UBERON:0000119,2.24e-09,309;UBERON:0001870,7.57e-09,3;UBERON:0000988,3.45e-08,3;UBERON:0005383,3.81e-08,3;UBERON:0005382,3.81e-08,3;UBERON:0001896,1.15e-07,3;UBERON:0005290,1.15e-07,3;UBERON:0010096,1.15e-07,3 | |||
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| ||
|short_description=p2@GDAP1L1 | |||
}} | }} |
Latest revision as of 07:46, 16 September 2015
Short description: | p2@GDAP1L1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_GDAP1L1_5end |
Coexpression cluster: | C2114_neuroblastoma_parietal_occipital_Neurons_brain_medial_amygdala |
Association with transcript: | 0bp_to_ENST00000262604, ENST00000372946, ENST00000372947, ENST00000545149, NM_024034, uc002xlp.1, uc002xlq.2, uc010zwl.1, uc010zwm.1, uc010zwn.1_5end |
EntrezGene: | GDAP1L1 |
HGNC: | 4213 |
UniProt: | F8W7N4B7Z1I3E7ENJ1Q96MZ0Q5JY50 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 4.74e-08 | 8 |
neuron | 2.24e-07 | 6 |
neuroblast | 2.24e-07 | 6 |
electrically signaling cell | 2.24e-07 | 6 |
embryonic stem cell | 3.09e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
neuroendocrine tumor | 2.39e-07 | 6 |