FFCP PHASE1:Hg19::chr20:43029911..43029912,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr20:43029911..43029912,+ to FFCP PHASE1:Hg19::chr20:43029911..43029912,+: NSchange) |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3172 | |EntrezGene=3172 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5024 | |HGNC=5024 | ||
|TSSclassifier=strong | |||
|UniProt=F8WBS7 | |UniProt=F8WBS7 | ||
|association_with_transcript=1bp_to_ENST00000372920_5end | |||
|cluster_id=chr20:43029911..43029912,+ | |||
|coexpression_cluster_id=C304 | |||
|description=CAGE_peak_6_at_HNF4A_5end | |||
|id=chr20:43029911..43029912,+ | |||
|ontology_enrichment_celltype=CL:0000181!6.35e-17!12;CL:0000417!6.35e-17!12;CL:0000668!6.35e-17!12;CL:0000414!6.35e-17!12;CL:0000412!6.35e-17!12;CL:0000182!6.35e-17!12;CL:0002563!1.04e-08!4;CL:0000223!1.23e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0000182;2.03e-10;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,2.13e-10,12 | |||
|ontology_enrichment_development_v019=UBERON:0004161;7.14e-24;11!UBERON:0009497;2.47e-20;13!UBERON:0001041;3.09e-09;30!UBERON:0003104;3.09e-09;31 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002107!1.94e-20!19;UBERON:0006925!1.94e-20!19;UBERON:0008836!1.94e-20!19;UBERON:0009497!7.99e-20!25;UBERON:0000015!7.99e-20!25;UBERON:0002423!7.99e-20!25;UBERON:0006235!7.99e-20!25;UBERON:0004161!7.99e-20!25;UBERON:0008835!1.50e-17!22;UBERON:0003894!1.50e-17!22;UBERON:0009854!9.39e-17!23;UBERON:0003929!3.65e-16!54;UBERON:0005172!5.78e-16!55;UBERON:0005173!5.78e-16!55;UBERON:0007499!2.37e-15!25;UBERON:0005057!9.88e-15!26;UBERON:0009856!9.88e-15!26;UBERON:0002417!3.26e-14!61;UBERON:0000916!3.26e-14!61;UBERON:0000160!2.14e-13!27;UBERON:0004921!4.94e-13!129;UBERON:0004185!4.94e-13!129;UBERON:0002365!3.14e-12!31;UBERON:0002330!3.14e-12!31;UBERON:0005911!5.51e-12!82;UBERON:0001007!6.95e-12!155;UBERON:0001555!6.95e-12!155;UBERON:0007026!6.95e-12!155;UBERON:0002368!9.69e-11!35;UBERON:0004119!1.19e-10!169;UBERON:0000925!1.19e-10!169;UBERON:0006595!1.19e-10!169;UBERON:0005409!3.02e-10!35;UBERON:0001301!3.00e-09!1;UBERON:0001052!5.30e-09!4;UBERON:0005177!9.05e-09!107;UBERON:0001242!1.04e-08!4;UBERON:0001262!1.04e-08!4;UBERON:0004786!1.04e-08!4;UBERON:0004808!1.04e-08!4;UBERON:0001277!1.04e-08!4;UBERON:0009569!3.40e-08!113;UBERON:0000949!3.57e-08!45;UBERON:0002530!8.68e-08!59;UBERON:0004907!2.28e-07!5;UBERON:0000059!3.65e-07!11;UBERON:0003350!3.91e-07!5;UBERON:0000077!7.54e-07!130 | |||
|ontology_enrichment_uberon_v019=UBERON:0002107;2.68e-24;19!UBERON:0006925;2.68e-24;19!UBERON:0002108;1.61e-23;4!UBERON:0002423;1.28e-18;25!UBERON:0002365;5.61e-15;31!UBERON:0002330;5.61e-15;31!UBERON:0000160;7.70e-15;17!UBERON:0005409;8.88e-12;22!UBERON:0002368;1.65e-11;33!UBERON:0002114;9.43e-11;2!UBERON:0001007;1.94e-10;81!UBERON:0000949;2.50e-09;43!UBERON:0001052;2.18e-08;4!UBERON:0004921;2.16e-07;33!UBERON:0004907;5.86e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,3.12e-24,19;UBERON:0006925,3.12e-24,19;UBERON:0008836,3.12e-24,19;UBERON:0002108,1.61e-23,4;UBERON:0008835,5.12e-21,22;UBERON:0003894,5.12e-21,22;UBERON:0009854,3.94e-20,23;UBERON:0007499,1.43e-18,25;UBERON:0009497,1.43e-18,25;UBERON:0000015,1.43e-18,25;UBERON:0002423,1.43e-18,25;UBERON:0006235,1.43e-18,25;UBERON:0004161,1.43e-18,25;UBERON:0009856,7.03e-18,26;UBERON:0002365,4.33e-15,31;UBERON:0002330,4.33e-15,31;UBERON:0000160,6.84e-15,17;UBERON:0002368,1.99e-13,35;UBERON:0004921,7.31e-12,118;UBERON:0002114,9.90e-11,2;UBERON:0000949,1.48e-10,45;UBERON:0005409,1.55e-10,25;UBERON:0001007,1.06e-09,145;UBERON:0001555,1.06e-09,145;UBERON:0007026,1.06e-09,145;UBERON:0003929,7.12e-09,54;UBERON:0005172,7.12e-09,54;UBERON:0005173,7.12e-09,54;UBERON:0004119,8.31e-09,160;UBERON:0000925,8.31e-09,160;UBERON:0006595,8.31e-09,160;UBERON:0001052,1.82e-08,4;UBERON:0002530,3.70e-08,59;UBERON:0002417,4.98e-08,60;UBERON:0000916,4.98e-08,60;UBERON:0004907,5.08e-07,5 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327447688744282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,1.77236972004421,0,0.245976877086227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.9273691048295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0.973033209536731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,1.02418136999391,0.906574442192831,0.943649613958588,0,0,0,0,0,0,0,0,0,0,0,0.945668487590378,0.734364233889974,0,0,0,0,0,0,0,0,0,0,0,0,0,2.05173127149315,1.32506888912221,0,0,0.171086837884329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.82631744101899,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121917924982269,0,0,0,0,0,0,0,0,0,0,1.62065732026684,0.874238242015829,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.5870805215462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327447688744282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,1.77236972004421,0,0.245976877086227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.9273691048295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0.973033209536731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,1.02418136999391,0.906574442192831,0.943649613958588,0,0,0,0,0,0,0,0,0,0,0,0.945668487590378,0.734364233889974,0,0,0,0,0,0,0,0,0,0,0,0,0,2.05173127149315,1.32506888912221,0,0,0.171086837884329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.82631744101899,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121917924982269,0,0,0,0,0,0,0,0,0,0,1.62065732026684,0.874238242015829,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.5870805215462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p6@HNF4A | |||
}} | }} |
Latest revision as of 07:58, 16 September 2015
Short description: | p6@HNF4A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_HNF4A_5end |
Coexpression cluster: | [[Coexpression cluster:C304|]] |
Association with transcript: | 1bp_to_ENST00000372920_5end |
EntrezGene: | HNF4A |
HGNC: | 5024 |
UniProt: | F8WBS7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 2.13e-10 | 12 |
Ontology term | p-value | n |
---|---|---|
liver | 3.12e-24 | 19 |
digestive gland | 3.12e-24 | 19 |
liver bud | 3.12e-24 | 19 |
small intestine | 1.61e-23 | 4 |
hepatic diverticulum | 5.12e-21 | 22 |
liver primordium | 5.12e-21 | 22 |
digestive tract diverticulum | 3.94e-20 | 23 |
epithelial sac | 1.43e-18 | 25 |
epithelium of foregut-midgut junction | 1.43e-18 | 25 |
anatomical boundary | 1.43e-18 | 25 |
hepatobiliary system | 1.43e-18 | 25 |
foregut-midgut junction | 1.43e-18 | 25 |
septum transversum | 1.43e-18 | 25 |
sac | 7.03e-18 | 26 |
exocrine gland | 4.33e-15 | 31 |
exocrine system | 4.33e-15 | 31 |
intestine | 6.84e-15 | 17 |
endocrine gland | 1.99e-13 | 35 |
subdivision of digestive tract | 7.31e-12 | 118 |
duodenum | 9.90e-11 | 2 |
endocrine system | 1.48e-10 | 45 |
gastrointestinal system | 1.55e-10 | 25 |
digestive system | 1.06e-09 | 145 |
digestive tract | 1.06e-09 | 145 |
primitive gut | 1.06e-09 | 145 |
gut epithelium | 7.12e-09 | 54 |
abdomen element | 7.12e-09 | 54 |
abdominal segment element | 7.12e-09 | 54 |
endoderm-derived structure | 8.31e-09 | 160 |
endoderm | 8.31e-09 | 160 |
presumptive endoderm | 8.31e-09 | 160 |
rectum | 1.82e-08 | 4 |
gland | 3.70e-08 | 59 |
abdominal segment of trunk | 4.98e-08 | 60 |
abdomen | 4.98e-08 | 60 |
lower digestive tract | 5.08e-07 | 5 |