FFCP PHASE1:Hg19::chr10:116286599..116286654,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3983 | |EntrezGene=3983 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=78 | |HGNC=78 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-5bp_to_ENST00000369257_5end | |association_with_transcript=-5bp_to_ENST00000369257_5end | ||
|cluster_id=chr10:116286599..116286654,- | |||
|description=CAGE_peak_2_at_ABLIM1_5end | |description=CAGE_peak_2_at_ABLIM1_5end | ||
|id=chr10:116286599..116286654,- | |id=chr10:116286599..116286654,- | ||
|ontology_enrichment_celltype=CL:0000542!1.36e-12!53;CL:0000051!1.36e-12!53;CL:0000838!2.06e-12!52;CL:0000791!3.41e-10!18;CL:0000789!3.41e-10!18;CL:0002420!3.41e-10!18;CL:0002419!3.41e-10!18;CL:0000790!3.41e-10!18;CL:0000223!2.65e-09!59;CL:0000066!5.65e-09!254;CL:0002076!7.48e-09!43;CL:0000625!3.58e-07!11;CL:0000084!3.91e-07!25;CL:0000827!3.91e-07!25 | |ontology_enrichment_celltype=CL:0000542!1.36e-12!53;CL:0000051!1.36e-12!53;CL:0000838!2.06e-12!52;CL:0000791!3.41e-10!18;CL:0000789!3.41e-10!18;CL:0002420!3.41e-10!18;CL:0002419!3.41e-10!18;CL:0000790!3.41e-10!18;CL:0000223!2.65e-09!59;CL:0000066!5.65e-09!254;CL:0002076!7.48e-09!43;CL:0000625!3.58e-07!11;CL:0000084!3.91e-07!25;CL:0000827!3.91e-07!25 | ||
|ontology_enrichment_celltype_v019=CL:0000791;1.69e-10;18!CL:0000789;1.69e-10;18!CL:0002419;1.69e-10;18!CL:0000542;1.40e-07;53!CL:0002251;1.45e-07;20!CL:0002076;1.76e-07;42!CL:0000625;2.32e-07;11!CL:0000084;2.52e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,7.40e-13,53;CL:0000051,7.40e-13,53;CL:0000838,1.13e-12,52;CL:0000223,1.72e-10,58;CL:0000791,1.74e-10,18;CL:0000789,1.74e-10,18;CL:0002420,1.74e-10,18;CL:0002419,1.74e-10,18;CL:0000790,1.74e-10,18;CL:0000066,3.58e-10,253;CL:0002076,1.03e-09,42;CL:0002251,1.54e-07,20;CL:0000625,2.31e-07,11;CL:0000084,2.40e-07,25;CL:0000827,2.40e-07,25 | |||
|ontology_enrichment_development_v019=CL:0000790;1.69e-10;18!CL:0000051;1.40e-07;53!UBERON:0006595;1.45e-07;86!UBERON:0008947;3.33e-07;29 | |||
|ontology_enrichment_disease=DOID:305!1.50e-18!106;DOID:0050687!5.15e-13!143;DOID:1749!2.99e-07!14 | |ontology_enrichment_disease=DOID:305!1.50e-18!106;DOID:0050687!5.15e-13!143;DOID:1749!2.99e-07!14 | ||
|ontology_enrichment_disease_v019=DOID:1749;1.91e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,2.74e-19,106;DOID:0050687,4.93e-14,143;DOID:1749,1.92e-07,14 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,9.79e-17,114;UBERON:0004921,2.55e-13,118;UBERON:0001007,8.81e-12,145;UBERON:0001555,8.81e-12,145;UBERON:0007026,8.81e-12,145;UBERON:0001041,8.94e-12,87;UBERON:0004119,3.33e-11,160;UBERON:0000925,3.33e-11,160;UBERON:0006595,3.33e-11,160;UBERON:0001004,2.19e-10,74;UBERON:0011216,2.04e-09,223;UBERON:0000065,4.22e-09,54;UBERON:0001557,2.49e-07,19;UBERON:0000072,3.06e-07,47;UBERON:0001048,6.47e-07,160;UBERON:0008947,8.51e-07,38;UBERON:0003258,8.51e-07,38 | |||
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|short_description=p2@ABLIM1 | |short_description=p2@ABLIM1 | ||
}} | }} |
Latest revision as of 12:43, 16 September 2015
Short description: | p2@ABLIM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_ABLIM1_5end |
Coexpression cluster: | NA |
Association with transcript: | -5bp_to_ENST00000369257_5end |
EntrezGene: | ABLIM1 |
HGNC: | 78 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 7.40e-13 | 53 |
common lymphoid progenitor | 7.40e-13 | 53 |
lymphoid lineage restricted progenitor cell | 1.13e-12 | 52 |
endodermal cell | 1.72e-10 | 58 |
mature alpha-beta T cell | 1.74e-10 | 18 |
alpha-beta T cell | 1.74e-10 | 18 |
immature T cell | 1.74e-10 | 18 |
mature T cell | 1.74e-10 | 18 |
immature alpha-beta T cell | 1.74e-10 | 18 |
epithelial cell | 3.58e-10 | 253 |
endo-epithelial cell | 1.03e-09 | 42 |
epithelial cell of alimentary canal | 1.54e-07 | 20 |
CD8-positive, alpha-beta T cell | 2.31e-07 | 11 |
T cell | 2.40e-07 | 25 |
pro-T cell | 2.40e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
adult organism | 9.79e-17 | 114 |
subdivision of digestive tract | 2.55e-13 | 118 |
digestive system | 8.81e-12 | 145 |
digestive tract | 8.81e-12 | 145 |
primitive gut | 8.81e-12 | 145 |
foregut | 8.94e-12 | 87 |
endoderm-derived structure | 3.33e-11 | 160 |
endoderm | 3.33e-11 | 160 |
presumptive endoderm | 3.33e-11 | 160 |
respiratory system | 2.19e-10 | 74 |
organ system subdivision | 2.04e-09 | 223 |
respiratory tract | 4.22e-09 | 54 |
upper respiratory tract | 2.49e-07 | 19 |
segment of respiratory tract | 3.06e-07 | 47 |
primordium | 6.47e-07 | 160 |
respiratory primordium | 8.51e-07 | 38 |
endoderm of foregut | 8.51e-07 | 38 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 2.74e-19 | 106 |
cell type cancer | 4.93e-14 | 143 |
squamous cell carcinoma | 1.92e-07 | 14 |