FFCP PHASE1:Hg19::chr4:169552619..169552630,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23022 | |EntrezGene=23022 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17068 | |HGNC=17068 | ||
|TSSclassifier=strong | |||
|UniProt=D6RBH5 | |UniProt=D6RBH5 | ||
|association_with_transcript=-135bp_to_ENST00000504519_5end | |association_with_transcript=-135bp_to_ENST00000504519_5end | ||
|cluster_id=chr4:169552619..169552630,+ | |||
|coexpression_cluster_id=C947 | |coexpression_cluster_id=C947 | ||
|description=CAGE_peak_18_at_PALLD_5end | |description=CAGE_peak_18_at_PALLD_5end | ||
|id=chr4:169552619..169552630,+ | |id=chr4:169552619..169552630,+ | ||
|ontology_enrichment_celltype=CL:0000055!3.54e-10!180;CL:0000128!6.25e-07!7;CL:0000126!6.25e-07!7;CL:0000127!6.25e-07!7;CL:0002453!6.25e-07!7 | |ontology_enrichment_celltype=CL:0000055!3.54e-10!180;CL:0000128!6.25e-07!7;CL:0000126!6.25e-07!7;CL:0000127!6.25e-07!7;CL:0002453!6.25e-07!7 | ||
|ontology_enrichment_celltype_v019=CL:0000062;5.90e-13;9!CL:0000128;9.04e-13;7!CL:0000126;9.04e-13;7!CL:0000127;9.04e-13;7!CL:0000064;8.27e-09;3!CL:0000067;8.27e-09;3!CL:0005012;8.27e-09;3!CL:0002304;8.27e-09;3!CL:0002166;1.76e-08;3!CL:0002603;2.29e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000128,4.43e-13,7;CL:0000126,4.43e-13,7;CL:0000127,4.43e-13,7;CL:0002453,4.43e-13,7;CL:0000062,2.16e-10,11;CL:0000375,2.16e-10,11;CL:0000335,2.16e-10,11;CL:0000064,6.55e-09,3;CL:0000067,6.55e-09,3;CL:0005012,6.55e-09,3;CL:0002304,6.55e-09,3;CL:0002166,1.15e-08,3;CL:0002603,1.72e-08,3 | |||
|ontology_enrichment_development_v019=CL:0000335;2.21e-10;11 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!2.88e-09!365;UBERON:0000468!2.55e-08!659;UBERON:0000481!2.13e-07!347;UBERON:0002200!3.94e-07!11;UBERON:0006876!3.94e-07!11 | |ontology_enrichment_uberon=UBERON:0000475!2.88e-09!365;UBERON:0000468!2.55e-08!659;UBERON:0000481!2.13e-07!347;UBERON:0002200!3.94e-07!11;UBERON:0006876!3.94e-07!11 | ||
|ontology_enrichment_uberon_v019=UBERON:0006876;1.33e-13;11!UBERON:0001708;1.03e-10;4!UBERON:0008895;1.03e-10;4!UBERON:0000488;1.11e-10;4!UBERON:0010371;1.31e-10;31!UBERON:0007625;2.84e-10;11!UBERON:0001778;8.27e-09;3!UBERON:0001775;8.27e-09;3!UBERON:0011159;1.49e-08;5!UBERON:0005284;2.99e-08;5!UBERON:0001456;6.74e-08;21!UBERON:0002203;4.35e-07;6!UBERON:0001768;4.35e-07;6!UBERON:0002200;4.35e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006876,1.80e-13,11;UBERON:0001708,8.46e-11,4;UBERON:0008895,8.46e-11,4;UBERON:0000033,1.00e-10,56;UBERON:0000488,1.49e-10,4;UBERON:0007625,3.40e-10,11;UBERON:0000153,3.13e-09,62;UBERON:0007811,3.13e-09,62;UBERON:0001778,6.55e-09,3;UBERON:0001775,6.55e-09,3;UBERON:0011159,1.28e-08,5;UBERON:0001444,1.48e-08,49;UBERON:0005284,3.35e-08,5;UBERON:0001456,2.62e-07,22;UBERON:0010188,3.65e-07,6;UBERON:0002539,3.65e-07,6;UBERON:0008816,3.65e-07,6;UBERON:0002203,5.25e-07,6;UBERON:0001768,5.25e-07,6;UBERON:0002200,5.25e-07,6 | |||
|phase1_expression=1.99846217197612,0.856402095563933,0.563817616383885,0,0.446961094427288,0,0,0,0.261185628199839,0,0.697801167972428,1.52908960491121,1.84636884759917,0.37129905888014,0.994192127183747,0,0,0,0,2.83178433576612,2.65200898617529,2.82109249330279,0.572471974262113,3.83248390204076,3.26410862946487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0.434539556882471,0,0,4.34860158954712,3.32594096193846,2.89854792787316,0.261958150995425,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0.496971951695318,1.2663051166458,0.397227542439656,0,0,0.560677600142307,3.20246987189115,1.97334038733728,0,0.134710672069688,0.163461903113459,1.66493170409425,1.15235184896,0,0,0,0,0,0.161872944368132,0,0,0,0,2.37600571456411,2.47266929278557,0,0,0,0,0,0.438977620880838,2.45190236639216,0.45071417671979,0.226864366320042,0.179389635688862,0.427114777637135,0,0.300091096084402,0.412210116953756,0,0.744467425326359,0.506328996723799,0.389748020644795,0.504867548488229,0.644349290496095,0.484938170456436,0.710019185033229,0,0.169560592310488,0.773043412653187,2.18196896472668,1.14721838155602,0.121973706129595,0.265059536642971,0.232387885739037,0.10366105501537,0,0,3.12899064659632,2.57296375277154,0,0.464367928031979,0,0.473227200159376,0.505754070234305,0.482022059766964,0.330881918197182,0.435758888184812,0.71181185733329,0.674156540800822,0.196221465125346,0.769494313892781,0,0,0,0,0,0,0,0,0,1.02940686179115,0.98775256867763,0,0.100528972411631,0.277765335475589,0.325808305310325,0,0,0.463721619900307,3.28744343860301,0,0,0,0,0.858486162094873,0,0,0,1.87467667973554,5.20744597416465,3.26082723657489,0.179117045405697,0.290633938513962,0,0,0,0.829312462163088,0.720599767084807,1.64115163454294,0,0,0,0,0,0,0,2.5790149399433,0.43596006883328,1.6134422880609,0.129271715757778,3.57656445851882,0,0.26593811658487,0,0.257207374262142,0,0.266422179016099,0,0,0.823240336780769,0,0,0.791951872933429,0,0,0,0,0,0,1.67737398844108,2.29723871668228,1.42636905040718,4.1986578933598,0.821905290201534,5.72995082367666,0,0,0,0,0.508189248444927,0,0,0.167516265334349,0,0,0,0,0.736148950314839,0.500170521059677,0,0.623912584592421,1.24900292158013,1.10391690523754,0.585707074963566,1.50473049863859,4.5481500811197,0,2.65690239414175,1.10621501125022,0.0868836144680828,1.37060810223918,1.37257369524342,0,0,0,0,0,0.907170879989041,0.744323423456331,8.74733247741956,1.40330047216537,0.128139149255701,1.02341449813341,1.28683136914886,0,1.07946785661859,0.532685175939381,0.246381468041427,0,0,0,0.802025881213139,0,0,0.182091168006717,0,0,0.0770153371044148,0,1.46139224653261,0.527758144464379,0,0,1.29549549661284,0,0.812839312631559,0.501689773854853,0.254876273045038,0,0.223874754722178,0,0,0,1.64007322849853,0.325378394664303,0.103041011647722,2.93022287418699,2.80532299729999,2.87132768998086,0.650060246036521,0,0.676695028044854,0.308097234229289,0.460511024178389,0.413509717453592,0.644521469209642,0.145016693914229,0.767039646744908,2.31483292681517,0.330569830721956,0,0.638063562472921,0.4046311234222,0.464845549297286,0,0,0,0,0.869932992075073,0.37064843820784,0.572499546967965,4.09374206295634,3.16379424718726,0.38126038784765,0,0,0.318203247925937,0,0.359744915166629,0.274537029736055,0.471249609382746,0.404364963146632,0,0.421258456238981,0,0.243713489631284,0,0.136499911407986,0.141405431953713,0,0,0.66343897524122,0.876901770507525,0,0,0.202910376962704,0.6196469961995,0.845086807596724,0,0.491245205065606,0.35667105148125,0,0,0.658589785919804,0,0.349934720244983,0.192444225451024,0,0,0,0.43050537267123,1.68471475667626,2.66058092122005,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0711418433484141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0.398495976502139,0.276283915531148,0,1.84083628503879,0,0,1.16828856491525,0,0,0.394573622547734,0,3.33410970433911,0,0,0,0.520855522170466,0.174919999992391,0,0.1137934482855,0,0.945550727071745,0,0.291604613383254,0.173624994933292,0,0,0,0,0,0,0,0.139423744278603,1.61595542857974,0,0,0.0897576444097721,0,0.638002319463839,0.824378340616761,0,0,0,0,0,0,0,0,0,0,0.163232808159148,0,0.216388639742091,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0.442306057399416,0.450970258243478,0.311064574191741,0,0,0.627865836814451,0,0,0,1.38847790668105,0,0,0.17472666824203,0,0.290268993867255,0.803982487948041,0.492692742319255,0.0969890164884194,0,0.225980740780532,0,0.397429223405979,0,0.195551382734803,0,0,0.19980960958213,0,0,0,0,0,1.64985824231757,0,0,0.713987523454252,0.577901179803038,0,0,0,1.28929632425987,0,0.279282401272254,0.229160424011684,0,0.399358000997982,0.429226048136571,0,0.134366944973453,0,0,0,0,0,0.196854963029498,0,0,0.136203406111576,0,0,0,0,0,0,0,0,0.577000469484979,0,1.9721607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| ||
|short_description=p18@PALLD | |short_description=p18@PALLD | ||
}} | }} |
Latest revision as of 16:37, 16 September 2015
Short description: | p18@PALLD |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_18_at_PALLD_5end |
Coexpression cluster: | C947_bone_Myoblast_mesenchymal_uterus_Preadipocyte_Ciliary_Astrocyte |
Association with transcript: | -135bp_to_ENST00000504519_5end |
EntrezGene: | PALLD |
HGNC: | 17068 |
UniProt: | D6RBH5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
oligodendrocyte | 4.43e-13 | 7 |
macroglial cell | 4.43e-13 | 7 |
astrocyte | 4.43e-13 | 7 |
oligodendrocyte precursor cell | 4.43e-13 | 7 |
osteoblast | 2.16e-10 | 11 |
osteoprogenitor cell | 2.16e-10 | 11 |
mesenchyme condensation cell | 2.16e-10 | 11 |
ciliated cell | 6.55e-09 | 3 |
ciliated epithelial cell | 6.55e-09 | 3 |
multi-ciliated epithelial cell | 6.55e-09 | 3 |
non-pigmented ciliary epithelial cell | 6.55e-09 | 3 |
epithelial cell of Malassez | 1.15e-08 | 3 |
astrocyte of the cerebellum | 1.72e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
vasculature of organ | 1.80e-13 | 11 |
jaw skeleton | 8.46e-11 | 4 |
splanchnocranium | 8.46e-11 | 4 |
head | 1.00e-10 | 56 |
atypical epithelium | 1.49e-10 | 4 |
pigment epithelium of eye | 3.40e-10 | 11 |
anterior region of body | 3.13e-09 | 62 |
craniocervical region | 3.13e-09 | 62 |
ciliary epithelium | 6.55e-09 | 3 |
ciliary body | 6.55e-09 | 3 |
primary subdivision of cranial skeletal system | 1.28e-08 | 5 |
subdivision of head | 1.48e-08 | 49 |
brain vasculature | 3.35e-08 | 5 |
face | 2.62e-07 | 22 |
protuberance | 3.65e-07 | 6 |
pharyngeal arch | 3.65e-07 | 6 |
embryonic head | 3.65e-07 | 6 |
vasculature of eye | 5.25e-07 | 6 |
uvea | 5.25e-07 | 6 |
vasculature of head | 5.25e-07 | 6 |