FFCP PHASE1:Hg19::chr13:28543253..28543276,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1045 | |EntrezGene=1045 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=1806 | |HGNC=1806 | ||
|TSSclassifier=strong | |||
|UniProt=Q99626 | |UniProt=Q99626 | ||
|association_with_transcript=40bp_to_NM_001265,uc001urv.2_5end | |association_with_transcript=40bp_to_NM_001265,uc001urv.2_5end | ||
|cluster_id=chr13:28543253..28543276,- | |||
|coexpression_cluster_id=C86 | |coexpression_cluster_id=C86 | ||
|description=CAGE_peak_5_at_CDX2_5end | |description=CAGE_peak_5_at_CDX2_5end | ||
|id=chr13:28543253..28543276,- | |id=chr13:28543253..28543276,- | ||
|ontology_enrichment_celltype=CL:0000453!1.23e-08!5;CL:0002322!1.31e-08!5;CL:0002563!9.32e-08!4;CL:0002253!2.35e-07!2;CL:0000990!3.98e-07!8 | |ontology_enrichment_celltype=CL:0000453!1.23e-08!5;CL:0002322!1.31e-08!5;CL:0002563!9.32e-08!4;CL:0002253!2.35e-07!2;CL:0000990!3.98e-07!8 | ||
|ontology_enrichment_celltype_v019=CL:0002563;9.77e-21;4!CL:0002253;8.03e-19;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,1.01e-20,4;CL:0002253,8.40e-19,2 | |||
|ontology_enrichment_development_v019=UBERON:0001045;3.25e-10;1 | |||
|ontology_enrichment_disease=DOID:305!5.09e-14!106;DOID:3119!3.29e-12!14;DOID:0050687!2.85e-11!143;DOID:299!8.31e-08!25;DOID:162!2.77e-07!235;DOID:4929!5.71e-07!2;DOID:14566!5.88e-07!239 | |ontology_enrichment_disease=DOID:305!5.09e-14!106;DOID:3119!3.29e-12!14;DOID:0050687!2.85e-11!143;DOID:299!8.31e-08!25;DOID:162!2.77e-07!235;DOID:4929!5.71e-07!2;DOID:14566!5.88e-07!239 | ||
|ontology_enrichment_disease_v019=DOID:3151;8.99e-10;1!DOID:3149;8.99e-10;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3151,9.82e-10,1;DOID:3149,9.82e-10,1 | |||
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|ontology_enrichment_uberon_v019=UBERON:0000160;1.08e-68;17!UBERON:0005409;2.29e-53;22!UBERON:0000059;1.92e-50;11!UBERON:0004907;9.64e-44;5!UBERON:0001155;2.58e-35;9!UBERON:0001052;2.60e-35;4!UBERON:0004921;2.44e-32;33!UBERON:0001242;9.77e-21;4!UBERON:0001262;9.77e-21;4!UBERON:0004786;9.77e-21;4!UBERON:0004808;9.77e-21;4!UBERON:0001277;9.77e-21;4!UBERON:0002108;1.49e-16;4!UBERON:0000485;4.24e-12;7!UBERON:0003929;4.24e-12;7!UBERON:0001555;5.53e-12;54!UBERON:0003350;1.19e-10;8!UBERON:0001154;3.25e-10;1!UBERON:0001153;3.25e-10;1!UBERON:0009854;3.25e-10;1!UBERON:0001007;6.93e-10;81!UBERON:0009856;1.52e-09;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.08e-68,17;UBERON:0000059,1.86e-50,11;UBERON:0005409,5.38e-47,25;UBERON:0004907,9.22e-44,5;UBERON:0001155,2.58e-35,9;UBERON:0001052,2.60e-35,4;UBERON:0001242,1.01e-20,4;UBERON:0001262,1.01e-20,4;UBERON:0004786,1.01e-20,4;UBERON:0004808,1.01e-20,4;UBERON:0001277,1.01e-20,4;UBERON:0002108,1.53e-16,4;UBERON:0001046,2.85e-16,19;UBERON:0004921,3.33e-16,118;UBERON:0001007,1.07e-12,145;UBERON:0001555,1.07e-12,145;UBERON:0007026,1.07e-12,145;UBERON:0004119,2.97e-11,160;UBERON:0000925,2.97e-11,160;UBERON:0006595,2.97e-11,160;UBERON:0003350,1.21e-10,8;UBERON:0001154,3.10e-10,1;UBERON:0001153,3.10e-10,1;UBERON:0001045,3.10e-10,1;UBERON:0000485,1.62e-09,9;UBERON:0011216,2.78e-08,223 | |||
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| ||
|short_description=p5@CDX2 | |short_description=p5@CDX2 | ||
}} | }} |
Latest revision as of 23:38, 16 September 2015
Short description: | p5@CDX2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_CDX2_5end |
Coexpression cluster: | C86_colon_carcinoid_small_neuroectodermal_giant_large_neuroepithelioma |
Association with transcript: | 40bp_to_NM_001265, uc001urv.2_5end |
EntrezGene: | CDX2 |
HGNC: | 1806 |
UniProt: | Q99626 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 1.01e-20 | 4 |
epithelial cell of large intestine | 8.40e-19 | 2 |
Ontology term | p-value | n |
---|---|---|
intestine | 1.08e-68 | 17 |
large intestine | 1.86e-50 | 11 |
gastrointestinal system | 5.38e-47 | 25 |
lower digestive tract | 9.22e-44 | 5 |
colon | 2.58e-35 | 9 |
rectum | 2.60e-35 | 4 |
intestinal mucosa | 1.01e-20 | 4 |
wall of intestine | 1.01e-20 | 4 |
gastrointestinal system mucosa | 1.01e-20 | 4 |
gastrointestinal system epithelium | 1.01e-20 | 4 |
intestinal epithelium | 1.01e-20 | 4 |
small intestine | 1.53e-16 | 4 |
hindgut | 2.85e-16 | 19 |
subdivision of digestive tract | 3.33e-16 | 118 |
digestive system | 1.07e-12 | 145 |
digestive tract | 1.07e-12 | 145 |
primitive gut | 1.07e-12 | 145 |
endoderm-derived structure | 2.97e-11 | 160 |
endoderm | 2.97e-11 | 160 |
presumptive endoderm | 2.97e-11 | 160 |
epithelium of mucosa | 1.21e-10 | 8 |
vermiform appendix | 3.10e-10 | 1 |
caecum | 3.10e-10 | 1 |
midgut | 3.10e-10 | 1 |
simple columnar epithelium | 1.62e-09 | 9 |
organ system subdivision | 2.78e-08 | 223 |
Ontology term | p-value | n |
---|---|---|
skin squamous cell carcinoma | 9.82e-10 | 1 |
keratoacanthoma | 9.82e-10 | 1 |