FFCP PHASE1:Hg19::chr3:184095972..184095983,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
|||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7066 | |EntrezGene=7066 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11795 | |HGNC=11795 | ||
|TSSclassifier=strong | |||
|UniProt=P40225,Q5FBX8 | |UniProt=P40225,Q5FBX8 | ||
|association_with_transcript=-40bp_to_ENST00000204615,ENST00000353488,NM_000460,NM_001177597,NM_001177598,uc003fol.1,uc003fom.1_5end | |association_with_transcript=-40bp_to_ENST00000204615,ENST00000353488,NM_000460,NM_001177597,NM_001177598,uc003fol.1,uc003fom.1_5end | ||
|cluster_id=chr3:184095972..184095983,- | |||
|coexpression_cluster_id=C4308 | |coexpression_cluster_id=C4308 | ||
|description=CAGE_peak_3_at_THPO_5end | |description=CAGE_peak_3_at_THPO_5end | ||
|id=chr3:184095972..184095983,- | |id=chr3:184095972..184095983,- | ||
|ontology_enrichment_celltype=CL:0000181!3.35e-25!12;CL:0000417!3.35e-25!12;CL:0000668!3.35e-25!12;CL:0000414!3.35e-25!12;CL:0000412!3.35e-25!12;CL:0000182!3.35e-25!12 | |ontology_enrichment_celltype=CL:0000181!3.35e-25!12;CL:0000417!3.35e-25!12;CL:0000668!3.35e-25!12;CL:0000414!3.35e-25!12;CL:0000412!3.35e-25!12;CL:0000182!3.35e-25!12 | ||
|ontology_enrichment_celltype_v019=CL:0000182;6.19e-49;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,5.94e-49,12;CL:0000223,4.70e-10,58 | |||
|ontology_enrichment_development_v019=UBERON:0004161;1.50e-53;11!UBERON:0009497;2.50e-45;13!UBERON:0003104;1.92e-24;31!UBERON:0001041;1.22e-19;30 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:7;2.73e-09;39 | |||
|ontology_enrichment_disease_v019_2=DOID:7,1.49e-10,39 | |||
|ontology_enrichment_uberon=UBERON:0002107!2.59e-24!19;UBERON:0006925!2.59e-24!19;UBERON:0008836!2.59e-24!19;UBERON:0008835!9.99e-21!22;UBERON:0003894!9.99e-21!22;UBERON:0005057!1.17e-20!26;UBERON:0009854!9.71e-20!23;UBERON:0007499!5.31e-18!25;UBERON:0009497!5.31e-18!25;UBERON:0000015!5.31e-18!25;UBERON:0002423!5.31e-18!25;UBERON:0006235!5.31e-18!25;UBERON:0004161!5.31e-18!25;UBERON:0009856!3.12e-17!26;UBERON:0005172!3.88e-14!55;UBERON:0005173!3.88e-14!55;UBERON:0002365!3.92e-14!31;UBERON:0002330!3.92e-14!31;UBERON:0002417!1.91e-12!61;UBERON:0000916!1.91e-12!61;UBERON:0002368!2.71e-12!35;UBERON:0000949!4.19e-11!45;UBERON:0003929!1.48e-10!54;UBERON:0005177!7.43e-07!107 | |ontology_enrichment_uberon=UBERON:0002107!2.59e-24!19;UBERON:0006925!2.59e-24!19;UBERON:0008836!2.59e-24!19;UBERON:0008835!9.99e-21!22;UBERON:0003894!9.99e-21!22;UBERON:0005057!1.17e-20!26;UBERON:0009854!9.71e-20!23;UBERON:0007499!5.31e-18!25;UBERON:0009497!5.31e-18!25;UBERON:0000015!5.31e-18!25;UBERON:0002423!5.31e-18!25;UBERON:0006235!5.31e-18!25;UBERON:0004161!5.31e-18!25;UBERON:0009856!3.12e-17!26;UBERON:0005172!3.88e-14!55;UBERON:0005173!3.88e-14!55;UBERON:0002365!3.92e-14!31;UBERON:0002330!3.92e-14!31;UBERON:0002417!1.91e-12!61;UBERON:0000916!1.91e-12!61;UBERON:0002368!2.71e-12!35;UBERON:0000949!4.19e-11!45;UBERON:0003929!1.48e-10!54;UBERON:0005177!7.43e-07!107 | ||
|ontology_enrichment_uberon_v019=UBERON:0002107;8.46e-55;19!UBERON:0006925;8.46e-55;19!UBERON:0002423;1.39e-41;25!UBERON:0002365;3.41e-32;31!UBERON:0002330;3.41e-32;31!UBERON:0002368;7.98e-28;33!UBERON:0000949;7.75e-20;43!UBERON:0002417;1.72e-15;58!UBERON:0000916;1.72e-15;58!UBERON:0005172;3.15e-15;52!UBERON:0005173;3.15e-15;52!UBERON:0002530;4.64e-10;57 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,7.89e-55,19;UBERON:0006925,7.89e-55,19;UBERON:0008836,7.89e-55,19;UBERON:0008835,2.56e-47,22;UBERON:0003894,2.56e-47,22;UBERON:0009854,3.01e-45,23;UBERON:0007499,1.32e-41,25;UBERON:0009497,1.32e-41,25;UBERON:0000015,1.32e-41,25;UBERON:0002423,1.32e-41,25;UBERON:0006235,1.32e-41,25;UBERON:0004161,1.32e-41,25;UBERON:0009856,5.41e-40,26;UBERON:0002365,1.72e-33,31;UBERON:0002330,1.72e-33,31;UBERON:0002368,1.27e-29,35;UBERON:0005172,4.98e-24,54;UBERON:0005173,4.98e-24,54;UBERON:0000949,5.98e-23,45;UBERON:0002417,1.44e-21,60;UBERON:0000916,1.44e-21,60;UBERON:0003929,4.75e-19,54;UBERON:0002530,2.15e-17,59;UBERON:0005177,1.50e-12,101;UBERON:0005911,2.28e-12,82;UBERON:0001041,1.27e-11,87;UBERON:0009569,3.01e-11,112;UBERON:0003914,1.74e-08,117;UBERON:0004921,2.47e-08,118;UBERON:0005256,4.11e-08,122;UBERON:0003104,1.22e-07,160;UBERON:0009142,1.22e-07,160 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.80265104465493,0.982827216677626,1.77236972004421,0,0.491953754172454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117141414992713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.515205058238611,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.557409525377156,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222886768554957,0,0,0,0,0,0,0,4.61450847834927,0,0,0,0,0,0.123084805461069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.718061155278177,0,0,0,0,0,0,0,0.902382642468723,0.392125068635479,0,0.189753732724185,0,0,0,0.141353071433941,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.9171149636534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223171457441873,0.134366944973453,0,2.32991899054908,1.3393140992228,1.483485450861,1.95470277177136,0.196854963029498,0.592713324460491,0,0,0,0,0,0,0,0,0,0.0788057072991982,0.157363764404994,0,0,0,0,0,1.017074150619,0,0,0,0,0,0,0,2.63794020620548,3.97520666736664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.471162288750703,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.781514011233092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.647428837187895,0.102662806856247,0,0,0,0,0,0,0,0,0,0,0.940634592723046,0,0,0,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.756998549010474,0.218531143927391,1.52038201213724,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.80265104465493,0.982827216677626,1.77236972004421,0,0.491953754172454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117141414992713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.515205058238611,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.557409525377156,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222886768554957,0,0,0,0,0,0,0,4.61450847834927,0,0,0,0,0,0.123084805461069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.718061155278177,0,0,0,0,0,0,0,0.902382642468723,0.392125068635479,0,0.189753732724185,0,0,0,0.141353071433941,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.9171149636534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223171457441873,0.134366944973453,0,2.32991899054908,1.3393140992228,1.483485450861,1.95470277177136,0.196854963029498,0.592713324460491,0,0,0,0,0,0,0,0,0,0.0788057072991982,0.157363764404994,0,0,0,0,0,1.017074150619,0,0,0,0,0,0,0,2.63794020620548,3.97520666736664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.471162288750703,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.781514011233092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.647428837187895,0.102662806856247,0,0,0,0,0,0,0,0,0,0,0.940634592723046,0,0,0,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.756998549010474,0.218531143927391,1.52038201213724,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p3@THPO | |short_description=p3@THPO | ||
}} | }} |
Latest revision as of 02:26, 17 September 2015
Short description: | p3@THPO |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_THPO_5end |
Coexpression cluster: | C4308_Hepatocyte_gastrointestinal_anaplastic_liver_hepatocellular_smallcell_hepatoblastoma |
Association with transcript: | -40bp_to_ENST00000204615, ENST00000353488, NM_000460, NM_001177597, NM_001177598, uc003fol.1, uc003fom.1_5end |
EntrezGene: | THPO |
HGNC: | 11795 |
UniProt: | P40225Q5FBX8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 5.94e-49 | 12 |
endodermal cell | 4.70e-10 | 58 |
Ontology term | p-value | n |
---|---|---|
liver | 7.89e-55 | 19 |
digestive gland | 7.89e-55 | 19 |
liver bud | 7.89e-55 | 19 |
hepatic diverticulum | 2.56e-47 | 22 |
liver primordium | 2.56e-47 | 22 |
digestive tract diverticulum | 3.01e-45 | 23 |
epithelial sac | 1.32e-41 | 25 |
epithelium of foregut-midgut junction | 1.32e-41 | 25 |
anatomical boundary | 1.32e-41 | 25 |
hepatobiliary system | 1.32e-41 | 25 |
foregut-midgut junction | 1.32e-41 | 25 |
septum transversum | 1.32e-41 | 25 |
sac | 5.41e-40 | 26 |
exocrine gland | 1.72e-33 | 31 |
exocrine system | 1.72e-33 | 31 |
endocrine gland | 1.27e-29 | 35 |
abdomen element | 4.98e-24 | 54 |
abdominal segment element | 4.98e-24 | 54 |
endocrine system | 5.98e-23 | 45 |
abdominal segment of trunk | 1.44e-21 | 60 |
abdomen | 1.44e-21 | 60 |
gut epithelium | 4.75e-19 | 54 |
gland | 2.15e-17 | 59 |
trunk region element | 1.50e-12 | 101 |
endo-epithelium | 2.28e-12 | 82 |
foregut | 1.27e-11 | 87 |
subdivision of trunk | 3.01e-11 | 112 |
epithelial tube | 1.74e-08 | 117 |
subdivision of digestive tract | 2.47e-08 | 118 |
trunk mesenchyme | 4.11e-08 | 122 |
mesenchyme | 1.22e-07 | 160 |
entire embryonic mesenchyme | 1.22e-07 | 160 |
Ontology term | p-value | n |
---|---|---|
disease of anatomical entity | 1.49e-10 | 39 |