FFCP PHASE1:Hg19::chr11:1897722..1897737,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr11:1897722..1897737,+
|short_description=p18@LSP1
|description=CAGE_peak_18_at_LSP1_5end
|association_with_transcript=15bp_to_ENST00000432093_5end
|EntrezGe...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4046 | |EntrezGene=4046 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6707 | |HGNC=6707 | ||
|TSSclassifier=strong | |||
|UniProt=E9PBD8 | |UniProt=E9PBD8 | ||
|association_with_transcript=15bp_to_ENST00000432093_5end | |||
|cluster_id=chr11:1897722..1897737,+ | |||
|coexpression_cluster_id=C477 | |||
|description=CAGE_peak_18_at_LSP1_5end | |||
|id=chr11:1897722..1897737,+ | |||
|ontology_enrichment_celltype=CL:0000188!6.75e-18!9;CL:0000594!1.02e-08!3;CL:0002564!1.53e-08!3;CL:0000680!1.73e-07!57;CL:0000056!1.73e-07!57;CL:0000355!1.73e-07!57;CL:0000183!2.74e-07!59;CL:0002575!9.02e-07!2 | |||
|ontology_enrichment_celltype_v019=CL:0002575;5.36e-32;2!CL:0000669;1.53e-16;4!CL:0002569;2.36e-11;6!CL:0002549;6.67e-09;2!CL:0002367;6.67e-09;2!CL:0000188;9.05e-08;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002575,5.37e-32,2;CL:0000669,1.53e-16,4;CL:0002569,2.36e-11,6;CL:0002549,6.42e-09,2;CL:0002367,7.49e-09,2;CL:0000188,9.85e-08,9 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002300!8.74e-09!3;UBERON:0002242!1.53e-08!3;UBERON:0003068!1.53e-08!3;UBERON:0002328!1.53e-08!3;UBERON:0004880!1.53e-08!3;UBERON:0002200!4.40e-08!11;UBERON:0006876!4.40e-08!11;UBERON:0002385!2.62e-07!63;UBERON:0001015!2.62e-07!63;UBERON:0000383!2.62e-07!63;UBERON:0000020!3.53e-07!23;UBERON:0001032!8.30e-07!24;UBERON:0004456!8.30e-07!24;UBERON:0001134!9.40e-07!61;UBERON:0002036!9.40e-07!61;UBERON:0003082!9.40e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0005284;4.38e-13;5!UBERON:0006876;5.16e-13;11!UBERON:0003422;2.36e-11;6!UBERON:0003104;7.31e-10;7!UBERON:0009142;7.31e-10;7!UBERON:0005629;6.67e-09;2!UBERON:0005358;6.67e-09;2!UBERON:0005969;6.67e-09;2!UBERON:0001886;6.67e-09;2!UBERON:0004086;6.67e-09;2!UBERON:0005282;6.67e-09;2!UBERON:0005281;6.67e-09;2!UBERON:0003956;6.67e-09;2!UBERON:0002331;3.65e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005284,3.88e-13,5;UBERON:0006876,5.06e-13,11;UBERON:0003422,2.36e-11,6;UBERON:0005629,6.42e-09,2;UBERON:0005358,6.42e-09,2;UBERON:0001886,6.42e-09,2;UBERON:0004086,6.42e-09,2;UBERON:0005282,6.42e-09,2;UBERON:0005281,6.42e-09,2;UBERON:0005969,7.49e-09,2;UBERON:0003956,7.49e-09,2;UBERON:0002331,3.65e-07,10;UBERON:0000358,3.65e-07,10;UBERON:0000307,3.65e-07,10;UBERON:0000091,3.65e-07,10;UBERON:0000087,3.65e-07,10;UBERON:0007010,3.65e-07,10;UBERON:0007806,3.65e-07,10;UBERON:0008780,3.65e-07,10;UBERON:0005728,3.65e-07,10 | |||
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| ||
|short_description=p18@LSP1 | |||
}} | }} |
Latest revision as of 04:14, 17 September 2015
Short description: | p18@LSP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_18_at_LSP1_5end |
Coexpression cluster: | C477_Mesenchymal_Amniotic_Placental_chorionic_umbilical_Cardiac_acute |
Association with transcript: | 15bp_to_ENST00000432093_5end |
EntrezGene: | LSP1 |
HGNC: | 6707 |
UniProt: | E9PBD8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
central nervous system pericyte | 5.37e-32 | 2 |
pericyte cell | 1.53e-16 | 4 |
mesenchymal stem cell of umbilical cord | 2.36e-11 | 6 |
fibroblast of choroid plexus | 6.42e-09 | 2 |
trabecular meshwork cell | 7.49e-09 | 2 |
cell of skeletal muscle | 9.85e-08 | 9 |
Ontology term | p-value | n |
---|---|---|
brain vasculature | 3.88e-13 | 5 |
vasculature of organ | 5.06e-13 | 11 |
mesenchyme of umbilical cord | 2.36e-11 | 6 |
vascular plexus | 6.42e-09 | 2 |
ventricle of nervous system | 6.42e-09 | 2 |
choroid plexus | 6.42e-09 | 2 |
brain ventricle | 6.42e-09 | 2 |
ventricular system of brain | 6.42e-09 | 2 |
ventricular system of central nervous system | 6.42e-09 | 2 |
reticulum trabeculare | 7.49e-09 | 2 |
aqueous drainage system | 7.49e-09 | 2 |
umbilical cord | 3.65e-07 | 10 |
blastocyst | 3.65e-07 | 10 |
blastula | 3.65e-07 | 10 |
bilaminar disc | 3.65e-07 | 10 |
inner cell mass | 3.65e-07 | 10 |
cleaving embryo | 3.65e-07 | 10 |
connecting stalk | 3.65e-07 | 10 |
inner cell mass derived epiblast | 3.65e-07 | 10 |
extraembryonic mesoderm | 3.65e-07 | 10 |