FFCP PHASE1:Hg19::chr1:28906381..28906392,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=677838 | |EntrezGene=677838 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=32655 | |HGNC=32655 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=12bp_to_ENST00000384581,NR_002987,uc001bqr.2_5end | |association_with_transcript=12bp_to_ENST00000384581,NR_002987,uc001bqr.2_5end | ||
|cluster_id=chr1:28906381..28906392,- | |||
|coexpression_cluster_id=C478 | |coexpression_cluster_id=C478 | ||
|description=CAGE_peak_3_at_SNORA61_5end | |description=CAGE_peak_3_at_SNORA61_5end | ||
|id=chr1:28906381..28906392,- | |id=chr1:28906381..28906392,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000235;9.26e-09;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000235,9.63e-09,6 | |||
|ontology_enrichment_development_v019=UBERON:0005425;1.82e-13;1!UBERON:0010226;6.82e-13;1 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.98e-07!115 | |ontology_enrichment_uberon=UBERON:0007023!2.98e-07!115 | ||
|ontology_enrichment_uberon_v019=UBERON:0004151;1.37e-16;3!UBERON:0000941;1.82e-13;1!UBERON:0001785;1.82e-13;1!UBERON:0002464;1.82e-13;1!UBERON:0004904;1.82e-13;1!UBERON:0001021;1.82e-13;1!UBERON:0002134;2.95e-13;1!UBERON:0005208;2.95e-13;1!UBERON:0004145;2.95e-13;1!UBERON:0005946;2.95e-13;1!UBERON:0005965;2.95e-13;1!UBERON:0002078;2.95e-13;1!UBERON:0002084;6.82e-13;1!UBERON:0002082;6.82e-13;1!UBERON:0000948;9.02e-09;22!UBERON:0007100;9.67e-08;25!UBERON:0003714;2.28e-07;2!UBERON:0005162;2.28e-07;2!UBERON:0000122;2.28e-07;2!UBERON:0002081;2.91e-07;2!UBERON:0002133;2.91e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004151,1.08e-16,3;UBERON:0000941,1.82e-13,1;UBERON:0001785,1.82e-13,1;UBERON:0002464,1.82e-13,1;UBERON:0004904,1.82e-13,1;UBERON:0001021,1.82e-13,1;UBERON:0003902,1.82e-13,1;UBERON:0005425,1.82e-13,1;UBERON:0002134,3.33e-13,1;UBERON:0005208,3.33e-13,1;UBERON:0005946,3.33e-13,1;UBERON:0005965,3.33e-13,1;UBERON:0002078,3.33e-13,1;UBERON:0002084,4.23e-13,1;UBERON:0002082,4.23e-13,1;UBERON:0010226,4.23e-13,1;UBERON:0000948,4.03e-08,24;UBERON:0005498,4.03e-08,24;UBERON:0004140,4.03e-08,24;UBERON:0009881,4.03e-08,24;UBERON:0004141,4.03e-08,24;UBERON:0003084,4.03e-08,24;UBERON:0007005,4.03e-08,24;UBERON:0004139,4.03e-08,24;UBERON:0004291,4.03e-08,24;UBERON:0003714,2.28e-07,2;UBERON:0005162,2.28e-07,2;UBERON:0000122,2.28e-07,2;UBERON:0007100,3.08e-07,27;UBERON:0002081,3.09e-07,2;UBERON:0002133,3.09e-07,2;UBERON:0010227,3.09e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0,0.0787107813136792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0.272906150057846,0,0,0,0,0,0.199463657621632,0,0,0,0,0.251248665256743,0,0.217188844705117,2.42159801053347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393010762749165,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0.328875809207352,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132957960518865,0,0,0,0,0.860234595106124,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272746120590835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144119953416961,0.12624243342638,0,0.381988425558278,0,0,0,0,0,0,0,0,0,0,0.845302752556,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2162378064119,0.502257091432126,2.10833939483032,0,0,0,0,0,0,0,0,0.431255149719035,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0.207970861530807,0,0.157702415033935,0.234282829985426,0,0,0,0,0,0,0,0,0,0,0.320182673410333,0.303127571446259,0,0,0,0,0,0,0,0,0,0,0.177561725313127,0,0,0,0,0,0.0920809889358963,0,0,0,0,0,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0.183138929636687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143124886741991,0,0,0.190630193923825,0,0,0,0,0,0,0,0,1.58510321173008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.27858874869665,0,0,0,0,0,0,0,0,0.185803175125719,0,0,0.159426272728822,0.399158742865633,0,0.211673582723883,0,0.280797178113459,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222886768554957,0.284136146806413,0,0,0,0,0.562677665642051,0,0.329607748453519,0.211125408127993,0,0,0,0,0.123084805461069,0,0,0,0,0.197286811273867,57.4759421632656,0,0,0,0,0,0.174919999992391,0,0,0,0.236387681767936,1.03423011972439,0,0,0.885741385813839,0.120596438625408,0,0.110579259931225,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189753732724185,0,0,0,0,0,0,0.0884575645033392,0.611030144933625,0.296521128680622,0.123563938946503,0,0,0.802577647298789,0,0,0.19566461893209,0.242780379534093,0.394584402849391,0,0,0,0,0,0,0,0,0,0,0,0.173559738335131,0,0,0.17472666824203,0,0,0.0730893170861856,0,0,0,0,0,0.19871461170299,0,0,0,0,0,0,0.114536596165916,0.171594997861965,0,0,0,0,0,0,0,0,0.547621515567972,0,0,0,0,0.229160424011684,2.15361907373044,0,0,0,0,0,1.16495949527454,0.0787831823072236,0.0824158583811665,0.0674035438541849,0,0,0,0.136203406111576,0,0.137539436597234,0.415440338029185,0,0.77380195455795,0,0,0,0,0,0,0,0.714695326373367,1.98627591109629,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0.106787412567695,0,0,0.496166021811951,0,0,0,0,0,0,0,0,0.886068179966986,0.244052529803926,0,1.14681839138014,0.110929051536852,0,0.691743174681154,0,0,0.285465333544967,0,0,0.28984205722165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.380805212168795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.244736704506468,0.179088841081487,0,0,0,0,0.337884881306145,0,0.690860683462397,0,0.138258436151731,0,0,0,0,0,0,0.19998739585493,0,0,0,0.184105950251841,0,0,0,0,0,0,0.169732529954025,0,0.495743057036009,0,0,0,0,0,0.3062454773532,0,1.41696576325585,0.638535436228605,0,0.252071696221718,0,0,5.71077681036618,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.620060389503552,0,0,0.548257766857182,0,0,0.127762427639595,0,0,0,0.455324382702595,0,0.230467975111559,0,0,0,0,0,0,0.157115589916002,0.280272163313789,0,0.215927591218621,0,0,0,0.116241425368125,0,0,0,0.17071847709395,0,0,0,0.0852134047591577,0,0,0,0,0.335566295393377,0,0,0,0,1.1598144313382,0,0,3.58111395290463,0,0,0.109940516745429,0,0,0.655678681511872,0,0.245148321753905,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143339583151451,0.157771562193185,0,0,1.0580536810308,0,0,0,0,0.109265571963696,0,0,0,0.18378979906969,0.250707539292375,0,0,0,0.103432995861895,0,0.23806443146374,0,0.124149428591716,0,0.0636471582781649,0.202117188958219,0.217716747896961,0.684466602170562,0,0,0.332660356546013,0.0814032686109745,0,0,0.179650404213174,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0,0.0787107813136792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0.272906150057846,0,0,0,0,0,0.199463657621632,0,0,0,0,0.251248665256743,0,0.217188844705117,2.42159801053347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393010762749165,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0.328875809207352,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132957960518865,0,0,0,0,0.860234595106124,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272746120590835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144119953416961,0.12624243342638,0,0.381988425558278,0,0,0,0,0,0,0,0,0,0,0.845302752556,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2162378064119,0.502257091432126,2.10833939483032,0,0,0,0,0,0,0,0,0.431255149719035,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0.207970861530807,0,0.157702415033935,0.234282829985426,0,0,0,0,0,0,0,0,0,0,0.320182673410333,0.303127571446259,0,0,0,0,0,0,0,0,0,0,0.177561725313127,0,0,0,0,0,0.0920809889358963,0,0,0,0,0,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0.183138929636687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143124886741991,0,0,0.190630193923825,0,0,0,0,0,0,0,0,1.58510321173008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.27858874869665,0,0,0,0,0,0,0,0,0.185803175125719,0,0,0.159426272728822,0.399158742865633,0,0.211673582723883,0,0.280797178113459,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222886768554957,0.284136146806413,0,0,0,0,0.562677665642051,0,0.329607748453519,0.211125408127993,0,0,0,0,0.123084805461069,0,0,0,0,0.197286811273867,57.4759421632656,0,0,0,0,0,0.174919999992391,0,0,0,0.236387681767936,1.03423011972439,0,0,0.885741385813839,0.120596438625408,0,0.110579259931225,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189753732724185,0,0,0,0,0,0,0.0884575645033392,0.611030144933625,0.296521128680622,0.123563938946503,0,0,0.802577647298789,0,0,0.19566461893209,0.242780379534093,0.394584402849391,0,0,0,0,0,0,0,0,0,0,0,0.173559738335131,0,0,0.17472666824203,0,0,0.0730893170861856,0,0,0,0,0,0.19871461170299,0,0,0,0,0,0,0.114536596165916,0.171594997861965,0,0,0,0,0,0,0,0,0.547621515567972,0,0,0,0,0.229160424011684,2.15361907373044,0,0,0,0,0,1.16495949527454,0.0787831823072236,0.0824158583811665,0.0674035438541849,0,0,0,0.136203406111576,0,0.137539436597234,0.415440338029185,0,0.77380195455795,0,0,0,0,0,0,0,0.714695326373367,1.98627591109629,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0.106787412567695,0,0,0.496166021811951,0,0,0,0,0,0,0,0,0.886068179966986,0.244052529803926,0,1.14681839138014,0.110929051536852,0,0.691743174681154,0,0,0.285465333544967,0,0,0.28984205722165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.380805212168795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.244736704506468,0.179088841081487,0,0,0,0,0.337884881306145,0,0.690860683462397,0,0.138258436151731,0,0,0,0,0,0,0.19998739585493,0,0,0,0.184105950251841,0,0,0,0,0,0,0.169732529954025,0,0.495743057036009,0,0,0,0,0,0.3062454773532,0,1.41696576325585,0.638535436228605,0,0.252071696221718,0,0,5.71077681036618,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.620060389503552,0,0,0.548257766857182,0,0,0.127762427639595,0,0,0,0.455324382702595,0,0.230467975111559,0,0,0,0,0,0,0.157115589916002,0.280272163313789,0,0.215927591218621,0,0,0,0.116241425368125,0,0,0,0.17071847709395,0,0,0,0.0852134047591577,0,0,0,0,0.335566295393377,0,0,0,0,1.1598144313382,0,0,3.58111395290463,0,0,0.109940516745429,0,0,0.655678681511872,0,0.245148321753905,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143339583151451,0.157771562193185,0,0,1.0580536810308,0,0,0,0,0.109265571963696,0,0,0,0.18378979906969,0.250707539292375,0,0,0,0.103432995861895,0,0.23806443146374,0,0.124149428591716,0,0.0636471582781649,0.202117188958219,0.217716747896961,0.684466602170562,0,0,0.332660356546013,0.0814032686109745,0,0,0.179650404213174,0,0,0,0,0,0 | ||
|short_description=p3@SNORA61 | |short_description=p3@SNORA61 | ||
}} | }} |
Latest revision as of 10:39, 17 September 2015
Short description: | p3@SNORA61 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SNORA61_5end |
Coexpression cluster: | C478_blood_Whole_Reticulocytes_liver_skeletal_lung_Neutrophils |
Association with transcript: | 12bp_to_ENST00000384581, NR_002987, uc001bqr.2_5end |
EntrezGene: | SNORA61 |
HGNC: | 32655 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
macrophage | 9.63e-09 | 6 |
Ontology term | p-value | n |
---|---|---|
cardiac chamber | 1.08e-16 | 3 |
cranial nerve II | 1.82e-13 | 1 |
cranial nerve | 1.82e-13 | 1 |
nerve trunk | 1.82e-13 | 1 |
nerve connecting eye with brain | 1.82e-13 | 1 |
nerve | 1.82e-13 | 1 |
retinal neural layer | 1.82e-13 | 1 |
presumptive neural retina | 1.82e-13 | 1 |
tricuspid valve | 3.33e-13 | 1 |
right atrium valve | 3.33e-13 | 1 |
outflow tract of atrium | 3.33e-13 | 1 |
outflow part of right atrium | 3.33e-13 | 1 |
right cardiac atrium | 3.33e-13 | 1 |
heart left ventricle | 4.23e-13 | 1 |
cardiac ventricle | 4.23e-13 | 1 |
future cardiac ventricle | 4.23e-13 | 1 |
heart | 4.03e-08 | 24 |
primitive heart tube | 4.03e-08 | 24 |
primary heart field | 4.03e-08 | 24 |
anterior lateral plate mesoderm | 4.03e-08 | 24 |
heart tube | 4.03e-08 | 24 |
heart primordium | 4.03e-08 | 24 |
cardiac mesoderm | 4.03e-08 | 24 |
cardiogenic plate | 4.03e-08 | 24 |
heart rudiment | 4.03e-08 | 24 |
neural tissue | 2.28e-07 | 2 |
multi cell component structure | 2.28e-07 | 2 |
neuron projection bundle | 2.28e-07 | 2 |
primary circulatory organ | 3.08e-07 | 27 |
cardiac atrium | 3.09e-07 | 2 |
atrioventricular valve | 3.09e-07 | 2 |
future cardiac atrium | 3.09e-07 | 2 |