FFCP PHASE1:Hg19::chr10:18240753..18240760,+: Difference between revisions
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|id=chr10:18240753..18240760,+
|short_description=p12@SLC39A12
|description=CAGE_peak_12_at_SLC39A12_5end
|association_with_transcript=-7bp_to_ENST00000377369,NM_00...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=221074 | |EntrezGene=221074 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20860 | |HGNC=20860 | ||
|TSSclassifier=strong | |||
|UniProt=Q504Y0 | |UniProt=Q504Y0 | ||
|association_with_transcript=-7bp_to_ENST00000377369,NM_001145195,NM_152725,uc001ipn.2,uc001ipo.2,uc001ipp.2,uc010qck.1_5end | |||
|cluster_id=chr10:18240753..18240760,+ | |||
|coexpression_cluster_id=C41 | |||
|description=CAGE_peak_12_at_SLC39A12_5end | |||
|id=chr10:18240753..18240760,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0003056;2.39e-66;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002298!1.80e-44!8;UBERON:0001896!9.28e-44!3;UBERON:0005290!9.28e-44!3;UBERON:0010096!9.28e-44!3;UBERON:0004733!1.02e-29!12;UBERON:0002028!1.02e-29!12;UBERON:0007277!1.02e-29!12;UBERON:0001049!2.34e-28!57;UBERON:0005068!2.34e-28!57;UBERON:0006241!2.34e-28!57;UBERON:0007135!2.34e-28!57;UBERON:0004732!1.91e-27!13;UBERON:0002616!2.23e-27!59;UBERON:0003075!3.02e-26!86;UBERON:0007284!3.02e-26!86;UBERON:0001872!6.59e-26!5;UBERON:0002346!4.84e-25!90;UBERON:0003076!8.35e-24!15;UBERON:0003057!8.35e-24!15;UBERON:0000955!5.58e-23!69;UBERON:0006238!5.58e-23!69;UBERON:0005743!5.36e-22!86;UBERON:0000073!7.54e-20!94;UBERON:0001016!7.54e-20!94;UBERON:0000988!9.53e-20!3;UBERON:0001017!2.93e-19!82;UBERON:0000033!6.69e-18!123;UBERON:0000153!5.05e-17!129;UBERON:0007811!5.05e-17!129;UBERON:0002336!1.34e-15!1;UBERON:0001018!1.34e-15!1;UBERON:0002473!1.34e-15!1;UBERON:0005340!1.34e-15!1;UBERON:0002316!1.34e-15!1;UBERON:0003544!1.34e-15!1;UBERON:0001020!1.34e-15!1;UBERON:0005970!1.34e-15!1;UBERON:0002437!1.34e-15!1;UBERON:0002581!2.75e-15!1;UBERON:0001882!3.17e-15!1;UBERON:0005403!3.17e-15!1;UBERON:0002791!1.19e-14!33;UBERON:0001893!3.16e-14!34;UBERON:0002020!3.24e-14!34;UBERON:0003528!3.24e-14!34;UBERON:0003056!6.74e-14!61;UBERON:0007023!8.89e-14!115;UBERON:0004121!1.18e-12!169;UBERON:0000924!2.46e-12!173;UBERON:0006601!2.46e-12!173;UBERON:0002780!8.14e-12!41;UBERON:0001890!8.14e-12!41;UBERON:0006240!8.14e-12!41;UBERON:0003080!1.55e-11!42;UBERON:0001950!4.87e-11!20;UBERON:0001869!1.18e-10!32;UBERON:0000200!2.52e-10!6;UBERON:0002619!4.21e-10!22;UBERON:0000956!5.77e-09!25;UBERON:0000203!5.77e-09!25;UBERON:0005162!1.86e-08!2;UBERON:0000122!1.86e-08!2;UBERON:0002148!2.00e-08!2;UBERON:0009662!2.00e-08!2;UBERON:0000064!5.14e-08!219;UBERON:0000025!1.30e-07!194;UBERON:0002680!3.34e-07!9;UBERON:0001895!3.34e-07!9;UBERON:0010092!3.34e-07!9;UBERON:0002308!3.55e-07!9;UBERON:0000125!3.55e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0000966;1.48e-40;5!UBERON:0005388;1.48e-40;5!UBERON:0001802;1.48e-40;5!UBERON:0000019;6.95e-12;19!UBERON:0000047;6.95e-12;19!UBERON:0004088;6.95e-12;19!UBERON:0010230;6.95e-12;19!UBERON:0000970;2.29e-11;20!UBERON:0002104;6.74e-11;21!UBERON:0001456;6.74e-11;21!UBERON:0000020;4.42e-10;23!UBERON:0001032;1.01e-09;24!UBERON:0004456;1.01e-09;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000966,4.27e-34,6;UBERON:0005388,4.27e-34,6;UBERON:0001802,4.27e-34,6;UBERON:0000019,2.29e-11,20;UBERON:0000047,2.29e-11,20;UBERON:0010312,2.29e-11,20;UBERON:0004088,2.29e-11,20;UBERON:0010230,2.29e-11,20;UBERON:0003072,2.29e-11,20;UBERON:0004128,2.29e-11,20;UBERON:0003071,2.29e-11,20;UBERON:0000970,6.74e-11,21;UBERON:0002104,6.74e-11,21;UBERON:0001456,1.80e-10,22;UBERON:0000020,1.01e-09,24;UBERON:0001032,1.01e-09,24;UBERON:0004456,1.01e-09,24;UBERON:0005085,7.41e-08,31 | |||
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|short_description=p12@SLC39A12 | |||
}} | }} |
Latest revision as of 11:45, 17 September 2015
Short description: | p12@SLC39A12 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_SLC39A12_5end |
Coexpression cluster: | C41_retina_eye_medulla_Retinal_medulloblastoma_kidney_pineal |
Association with transcript: | -7bp_to_ENST00000377369, NM_001145195, NM_152725, uc001ipn.2, uc001ipo.2, uc001ipp.2, uc010qck.1_5end |
EntrezGene: | SLC39A12 |
HGNC: | 20860 |
UniProt: | Q504Y0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
retina | 4.27e-34 | 6 |
photoreceptor array | 4.27e-34 | 6 |
posterior segment of eyeball | 4.27e-34 | 6 |
camera-type eye | 2.29e-11 | 20 |
simple eye | 2.29e-11 | 20 |
immature eye | 2.29e-11 | 20 |
ocular region | 2.29e-11 | 20 |
eyeball of camera-type eye | 2.29e-11 | 20 |
optic cup | 2.29e-11 | 20 |
optic vesicle | 2.29e-11 | 20 |
eye primordium | 2.29e-11 | 20 |
eye | 6.74e-11 | 21 |
visual system | 6.74e-11 | 21 |
face | 1.80e-10 | 22 |
sense organ | 1.01e-09 | 24 |
sensory system | 1.01e-09 | 24 |
entire sense organ system | 1.01e-09 | 24 |
ectodermal placode | 7.41e-08 | 31 |