FFCP PHASE1:Hg19::chr17:73717551..73717609,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3691 | |EntrezGene=3691 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6158 | |HGNC=6158 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_uc002jpi.3,uc010dgo.2_5end | |association_with_transcript=0bp_to_uc002jpi.3,uc010dgo.2_5end | ||
|cluster_id=chr17:73717551..73717609,+ | |||
|coexpression_cluster_id=C226 | |coexpression_cluster_id=C226 | ||
|description=CAGE_peak_1_at_ITGB4_5end | |description=CAGE_peak_1_at_ITGB4_5end | ||
|id=chr17:73717551..73717609,+ | |id=chr17:73717551..73717609,+ | ||
|ontology_enrichment_celltype=CL:0000066!7.09e-40!254;CL:0002076!6.37e-18!43;CL:0000223!3.99e-14!59;CL:0000076!1.36e-10!62;CL:0002368!3.42e-09!13;CL:0002251!1.12e-08!21 | |ontology_enrichment_celltype=CL:0000066!7.09e-40!254;CL:0002076!6.37e-18!43;CL:0000223!3.99e-14!59;CL:0000076!1.36e-10!62;CL:0002368!3.42e-09!13;CL:0002251!1.12e-08!21 | ||
|ontology_enrichment_celltype_v019=CL:0002076;9.28e-16;42!CL:0002251;1.06e-10;20!CL:0002368;5.80e-10;13!CL:0002202;4.35e-07;9!CL:0002632;4.35e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.12e-37,253;CL:0002076,4.39e-21,42;CL:0000223,3.23e-15,58;CL:0002251,1.07e-10,20;CL:0002368,5.58e-10,13;CL:0000076,1.90e-09,63;CL:0002202,4.17e-07,9;CL:0002632,4.17e-07,9 | |||
|ontology_enrichment_development_v019=CL:0000223;3.02e-08;58 | |||
|ontology_enrichment_disease=DOID:305!1.00e-17!106;DOID:0050687!6.12e-10!143;DOID:299!4.51e-09!25;DOID:1749!9.41e-09!14 | |ontology_enrichment_disease=DOID:305!1.00e-17!106;DOID:0050687!6.12e-10!143;DOID:299!4.51e-09!25;DOID:1749!9.41e-09!14 | ||
|ontology_enrichment_disease_v019=DOID:299;1.55e-09;25!DOID:1749;1.62e-09;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,5.16e-17,106;DOID:299,1.45e-09,25;DOID:1749,1.70e-09,14;DOID:0050687,2.53e-09,143 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.32e-21!169;UBERON:0000925!2.32e-21!169;UBERON:0006595!2.32e-21!169;UBERON:0000064!7.85e-20!219;UBERON:0007023!4.24e-16!115;UBERON:0004121!4.32e-16!169;UBERON:0000062!7.27e-16!511;UBERON:0001007!8.20e-16!155;UBERON:0001555!8.20e-16!155;UBERON:0007026!8.20e-16!155;UBERON:0000153!1.48e-15!129;UBERON:0007811!1.48e-15!129;UBERON:0000033!1.79e-15!123;UBERON:0000924!3.37e-15!173;UBERON:0006601!3.37e-15!173;UBERON:0000481!6.45e-15!347;UBERON:0004921!1.40e-14!129;UBERON:0004185!1.40e-14!129;UBERON:0000077!1.24e-13!130;UBERON:0003075!6.68e-13!86;UBERON:0007284!6.68e-13!86;UBERON:0001004!7.25e-13!72;UBERON:0002346!9.97e-12!90;UBERON:0000464!1.13e-11!104;UBERON:0001041!4.89e-11!98;UBERON:0000468!5.00e-11!659;UBERON:0000922!9.84e-11!612;UBERON:0001048!1.47e-10!168;UBERON:0000467!1.82e-10!625;UBERON:0000480!2.78e-10!626;UBERON:0000477!6.61e-10!286;UBERON:0002050!7.47e-10!605;UBERON:0005423!7.47e-10!605;UBERON:0005743!7.63e-10!86;UBERON:0000063!1.21e-09!97;UBERON:0000923!1.23e-09!604;UBERON:0005291!1.23e-09!604;UBERON:0006598!1.23e-09!604;UBERON:0002532!1.23e-09!604;UBERON:0000475!1.35e-09!365;UBERON:0001049!3.26e-09!57;UBERON:0005068!3.26e-09!57;UBERON:0006241!3.26e-09!57;UBERON:0007135!3.26e-09!57;UBERON:0000466!4.11e-09!126;UBERON:0003056!5.18e-09!61;UBERON:0002616!6.76e-09!59;UBERON:0000065!7.00e-09!53;UBERON:0001017!7.98e-09!82;UBERON:0004111!1.20e-08!241;UBERON:0005177!1.22e-08!107;UBERON:0000955!2.43e-08!69;UBERON:0006238!2.43e-08!69;UBERON:0000119!2.78e-08!312;UBERON:0000483!3.25e-08!309;UBERON:0005157!3.87e-08!51;UBERON:0005409!7.71e-08!35;UBERON:0000161!2.47e-07!35;UBERON:0008947!2.97e-07!38;UBERON:0003258!2.97e-07!38;UBERON:0000073!3.39e-07!94;UBERON:0001016!3.39e-07!94;UBERON:0005153!6.90e-07!37;UBERON:0002553!8.86e-07!70 | |ontology_enrichment_uberon=UBERON:0004119!2.32e-21!169;UBERON:0000925!2.32e-21!169;UBERON:0006595!2.32e-21!169;UBERON:0000064!7.85e-20!219;UBERON:0007023!4.24e-16!115;UBERON:0004121!4.32e-16!169;UBERON:0000062!7.27e-16!511;UBERON:0001007!8.20e-16!155;UBERON:0001555!8.20e-16!155;UBERON:0007026!8.20e-16!155;UBERON:0000153!1.48e-15!129;UBERON:0007811!1.48e-15!129;UBERON:0000033!1.79e-15!123;UBERON:0000924!3.37e-15!173;UBERON:0006601!3.37e-15!173;UBERON:0000481!6.45e-15!347;UBERON:0004921!1.40e-14!129;UBERON:0004185!1.40e-14!129;UBERON:0000077!1.24e-13!130;UBERON:0003075!6.68e-13!86;UBERON:0007284!6.68e-13!86;UBERON:0001004!7.25e-13!72;UBERON:0002346!9.97e-12!90;UBERON:0000464!1.13e-11!104;UBERON:0001041!4.89e-11!98;UBERON:0000468!5.00e-11!659;UBERON:0000922!9.84e-11!612;UBERON:0001048!1.47e-10!168;UBERON:0000467!1.82e-10!625;UBERON:0000480!2.78e-10!626;UBERON:0000477!6.61e-10!286;UBERON:0002050!7.47e-10!605;UBERON:0005423!7.47e-10!605;UBERON:0005743!7.63e-10!86;UBERON:0000063!1.21e-09!97;UBERON:0000923!1.23e-09!604;UBERON:0005291!1.23e-09!604;UBERON:0006598!1.23e-09!604;UBERON:0002532!1.23e-09!604;UBERON:0000475!1.35e-09!365;UBERON:0001049!3.26e-09!57;UBERON:0005068!3.26e-09!57;UBERON:0006241!3.26e-09!57;UBERON:0007135!3.26e-09!57;UBERON:0000466!4.11e-09!126;UBERON:0003056!5.18e-09!61;UBERON:0002616!6.76e-09!59;UBERON:0000065!7.00e-09!53;UBERON:0001017!7.98e-09!82;UBERON:0004111!1.20e-08!241;UBERON:0005177!1.22e-08!107;UBERON:0000955!2.43e-08!69;UBERON:0006238!2.43e-08!69;UBERON:0000119!2.78e-08!312;UBERON:0000483!3.25e-08!309;UBERON:0005157!3.87e-08!51;UBERON:0005409!7.71e-08!35;UBERON:0000161!2.47e-07!35;UBERON:0008947!2.97e-07!38;UBERON:0003258!2.97e-07!38;UBERON:0000073!3.39e-07!94;UBERON:0001016!3.39e-07!94;UBERON:0005153!6.90e-07!37;UBERON:0002553!8.86e-07!70 | ||
|ontology_enrichment_uberon_v019=UBERON:0004921;6.27e-08;33!UBERON:0002075;1.87e-07;18 | |||
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| ||
|short_description=p1@ITGB4 | |short_description=p1@ITGB4 | ||
}} | }} |
Latest revision as of 12:00, 17 September 2015
Short description: | p1@ITGB4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ITGB4_5end |
Coexpression cluster: | C226_Corneal_Keratinocyte_Esophageal_Urothelial_Mammary_Bronchial_Tracheal |
Association with transcript: | 0bp_to_uc002jpi.3, uc010dgo.2_5end |
EntrezGene: | ITGB4 |
HGNC: | 6158 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.12e-37 | 253 |
endo-epithelial cell | 4.39e-21 | 42 |
endodermal cell | 3.23e-15 | 58 |
epithelial cell of alimentary canal | 1.07e-10 | 20 |
respiratory epithelial cell | 5.58e-10 | 13 |
squamous epithelial cell | 1.90e-09 | 63 |
epithelial cell of tracheobronchial tree | 4.17e-07 | 9 |
epithelial cell of lower respiratory tract | 4.17e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 5.16e-17 | 106 |
adenocarcinoma | 1.45e-09 | 25 |
squamous cell carcinoma | 1.70e-09 | 14 |
cell type cancer | 2.53e-09 | 143 |