FFCP PHASE1:Hg19::chr1:156783894..156783917,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:156783894..156783917,- to FFCP PHASE1:Hg19::chr1:156783894..156783917,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9047 | |EntrezGene=9047 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10821 | |HGNC=10821 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000468744_5end | |||
|cluster_id=chr1:156783894..156783917,- | |||
|coexpression_cluster_id=C3884 | |||
|description=CAGE_peak_2_at_SH2D2A_5end | |||
|id=chr1:156783894..156783917,- | |||
|ontology_enrichment_celltype=CL:0000066!2.52e-19!254;CL:0002076!1.09e-07!43;CL:0002368!3.05e-07!13 | |||
|ontology_enrichment_celltype_v019=CL:0002368;9.09e-09;13!CL:0002076;2.71e-08;42 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,7.50e-24,253;CL:0002076,5.26e-10,42;CL:0000223,3.38e-09,58;CL:0002368,7.71e-09,13 | |||
|ontology_enrichment_development_v019=UBERON:0008947;2.10e-07;29 | |||
|ontology_enrichment_disease=DOID:305!1.66e-16!106;DOID:0050687!6.31e-14!143;DOID:162!8.38e-12!235;DOID:14566!5.22e-11!239 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.05e-19,106;DOID:162,3.97e-19,235;DOID:0050687,8.39e-19,143;DOID:14566,7.79e-18,239 | |||
|ontology_enrichment_uberon=UBERON:0000065!2.64e-10!53;UBERON:0000072!1.30e-09!46;UBERON:0008947!3.33e-09!38;UBERON:0003258!3.33e-09!38;UBERON:0004119!6.10e-09!169;UBERON:0000925!6.10e-09!169;UBERON:0006595!6.10e-09!169;UBERON:0001004!1.73e-08!72;UBERON:0004807!3.29e-08!28;UBERON:0005911!1.07e-07!82;UBERON:0001007!3.88e-07!155;UBERON:0001555!3.88e-07!155;UBERON:0007026!3.88e-07!155 | |||
|ontology_enrichment_uberon_v019=UBERON:0005911;1.54e-09;36!UBERON:0000072;2.03e-09;37!UBERON:0000065;4.90e-09;44!UBERON:0004807;3.62e-08;22!UBERON:0001737;6.96e-08;9!UBERON:0001557;6.96e-08;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000065,4.18e-10,54;UBERON:0008947,4.49e-10,38;UBERON:0003258,4.49e-10,38;UBERON:0000072,2.40e-09,47;UBERON:0004119,8.31e-09,160;UBERON:0000925,8.31e-09,160;UBERON:0006595,8.31e-09,160;UBERON:0004807,6.47e-08,28;UBERON:0001737,7.03e-08,9;UBERON:0001004,1.76e-07,74;UBERON:0005911,1.81e-07,82;UBERON:0001007,3.46e-07,145;UBERON:0001555,3.46e-07,145;UBERON:0007026,3.46e-07,145;UBERON:0004921,4.14e-07,118 | |||
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| ||
|short_description=p2@SH2D2A | |||
}} | }} |
Latest revision as of 18:21, 17 September 2015
Short description: | p2@SH2D2A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SH2D2A_5end |
Coexpression cluster: | C3884_large_Sebocyte_anaplastic_Keratinocyte_retinoblastoma_papillotubular_carcinoid |
Association with transcript: | 0bp_to_ENST00000468744_5end |
EntrezGene: | SH2D2A |
HGNC: | 10821 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 7.50e-24 | 253 |
endo-epithelial cell | 5.26e-10 | 42 |
endodermal cell | 3.38e-09 | 58 |
respiratory epithelial cell | 7.71e-09 | 13 |
Ontology term | p-value | n |
---|---|---|
respiratory tract | 4.18e-10 | 54 |
respiratory primordium | 4.49e-10 | 38 |
endoderm of foregut | 4.49e-10 | 38 |
segment of respiratory tract | 2.40e-09 | 47 |
endoderm-derived structure | 8.31e-09 | 160 |
endoderm | 8.31e-09 | 160 |
presumptive endoderm | 8.31e-09 | 160 |
respiratory system epithelium | 6.47e-08 | 28 |
larynx | 7.03e-08 | 9 |
respiratory system | 1.76e-07 | 74 |
endo-epithelium | 1.81e-07 | 82 |
digestive system | 3.46e-07 | 145 |
digestive tract | 3.46e-07 | 145 |
primitive gut | 3.46e-07 | 145 |
subdivision of digestive tract | 4.14e-07 | 118 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.05e-19 | 106 |
cancer | 3.97e-19 | 235 |
cell type cancer | 8.39e-19 | 143 |
disease of cellular proliferation | 7.79e-18 | 239 |