FFCP PHASE1:Hg19::chr7:22259826..22259838,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr7:22259826..22259838,-
|short_description=p11@RAPGEF5
|description=CAGE_peak_11_at_RAPGEF5_5end
|association_with_transcript=18bp_to_ENST00000420196_5end
|E...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9771 | |EntrezGene=9771 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16862 | |HGNC=16862 | ||
|TSSclassifier=strong | |||
|UniProt=C9JHM4 | |UniProt=C9JHM4 | ||
|association_with_transcript=18bp_to_ENST00000420196_5end | |||
|cluster_id=chr7:22259826..22259838,- | |||
|coexpression_cluster_id=C1887 | |||
|description=CAGE_peak_11_at_RAPGEF5_5end | |||
|id=chr7:22259826..22259838,- | |||
|ontology_enrichment_celltype=CL:0002139!8.51e-25!24;CL:0000115!1.55e-19!35;CL:0000071!4.26e-18!18;CL:0002546!4.26e-18!18;CL:0002078!8.72e-14!44;CL:1000413!5.52e-11!9;CL:0000213!7.37e-09!57;CL:0000215!7.37e-09!57;CL:0005020!2.69e-08!6;CL:0002138!2.69e-08!6;CL:0005022!2.69e-08!6;CL:0002543!3.87e-08!6;CL:0002544!2.18e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0002139;3.51e-21;24!CL:0000115;6.02e-15;36!CL:0000071;5.15e-14;18!CL:0002078;3.00e-09;45!CL:0002138;4.20e-09;6!CL:0002543;1.89e-08;6!CL:1000413;8.42e-08;9!CL:0002618;4.11e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,1.39e-21,24;CL:0000115,3.53e-18,36;CL:0000071,2.18e-14,18;CL:0002546,2.18e-14,18;CL:0002078,2.02e-13,45;CL:0000213,3.14e-09,58;CL:0000215,3.14e-09,58;CL:0005020,4.23e-09,6;CL:0002138,4.23e-09,6;CL:0005022,4.23e-09,6;CL:0002543,1.33e-08,6;CL:1000413,4.83e-08,9;CL:0002618,4.52e-07,3 | |||
|ontology_enrichment_development_v019=CL:0002546;5.15e-14;18!UBERON:0004872;1.75e-11;7!CL:0005022;4.20e-09;6!UBERON:0006241;5.50e-07;3!UBERON:0003057;5.50e-07;3!UBERON:0006603;7.76e-07;65 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.34e-60!115;UBERON:0004111!6.25e-30!241;UBERON:0000477!7.34e-27!286;UBERON:0000025!3.26e-25!194;UBERON:0001986!4.26e-18!18;UBERON:0004638!4.26e-18!18;UBERON:0004852!4.26e-18!18;UBERON:0001049!9.32e-18!57;UBERON:0005068!9.32e-18!57;UBERON:0006241!9.32e-18!57;UBERON:0007135!9.32e-18!57;UBERON:0000055!8.59e-17!69;UBERON:0004872!6.75e-14!84;UBERON:0000487!8.32e-14!22;UBERON:0003075!8.92e-14!86;UBERON:0007284!8.92e-14!86;UBERON:0000483!9.60e-14!309;UBERON:0000119!2.30e-13!312;UBERON:0002049!3.49e-13!79;UBERON:0007798!3.49e-13!79;UBERON:0001017!5.08e-13!82;UBERON:0002616!5.65e-13!59;UBERON:0005743!8.42e-13!86;UBERON:0002346!1.24e-12!90;UBERON:0002780!1.66e-12!41;UBERON:0001890!1.66e-12!41;UBERON:0006240!1.66e-12!41;UBERON:0001981!2.82e-12!60;UBERON:0007500!2.82e-12!60;UBERON:0004537!2.82e-12!60;UBERON:0006965!2.82e-12!60;UBERON:0003080!4.85e-12!42;UBERON:0001009!5.69e-12!113;UBERON:0006914!1.62e-11!25;UBERON:0002020!1.90e-11!34;UBERON:0003528!1.90e-11!34;UBERON:0000468!2.04e-11!659;UBERON:0000073!2.45e-11!94;UBERON:0001016!2.45e-11!94;UBERON:0000955!3.95e-11!69;UBERON:0006238!3.95e-11!69;UBERON:0001893!4.43e-11!34;UBERON:0003915!5.52e-11!9;UBERON:0004700!5.52e-11!9;UBERON:0001917!5.52e-11!9;UBERON:0003914!7.59e-11!118;UBERON:0000467!1.09e-10!625;UBERON:0000480!1.31e-10!626;UBERON:0004535!1.57e-10!110;UBERON:0002791!1.58e-10!33;UBERON:0001869!6.44e-10!32;UBERON:0002465!1.15e-09!10;UBERON:0001950!2.00e-09!20;UBERON:0002619!2.13e-09!22;UBERON:0000956!7.76e-08!25;UBERON:0000203!7.76e-08!25;UBERON:0001473!9.00e-08!8;UBERON:0004536!9.00e-08!8;UBERON:0006558!9.00e-08!8;UBERON:0000481!1.15e-07!347;UBERON:0003076!3.61e-07!15;UBERON:0003057!3.61e-07!15;UBERON:0000153!4.18e-07!129;UBERON:0007811!4.18e-07!129;UBERON:0000922!4.21e-07!612;UBERON:0002298!5.03e-07!8;UBERON:0003056!5.47e-07!61;UBERON:0001638!7.23e-07!9;UBERON:0003920!7.23e-07!9;UBERON:0004582!7.23e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;5.15e-14;18!UBERON:0001986;5.15e-14;18!UBERON:0004852;5.15e-14;18!UBERON:0000487;6.21e-11;22!UBERON:0006914;2.79e-09;25!UBERON:0002298;3.51e-08;6!UBERON:0003978;7.00e-08;3!UBERON:0000946;7.00e-08;3!UBERON:0003915;8.42e-08;9!UBERON:0004700;8.42e-08;9!UBERON:0001917;8.42e-08;9!UBERON:0001638;1.37e-07;9!UBERON:0003920;1.37e-07;9!UBERON:0004582;1.37e-07;9!UBERON:0000922;2.15e-07;49!UBERON:0002465;3.39e-07;10!UBERON:0002240;5.50e-07;3!UBERON:0005174;5.50e-07;3!UBERON:0001137;5.50e-07;3!UBERON:0004151;6.49e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,6.61e-27,114;UBERON:0004111,2.51e-17,240;UBERON:0000025,8.75e-15,192;UBERON:0004638,2.18e-14,18;UBERON:0001986,2.18e-14,18;UBERON:0004852,2.18e-14,18;UBERON:0000055,6.50e-14,68;UBERON:0004872,1.56e-13,83;UBERON:0000487,3.15e-11,22;UBERON:0002049,3.19e-11,78;UBERON:0007798,3.19e-11,78;UBERON:0001009,2.06e-10,112;UBERON:0003914,2.35e-10,117;UBERON:0007500,3.70e-10,59;UBERON:0001981,3.70e-10,59;UBERON:0004537,3.70e-10,59;UBERON:0006965,3.70e-10,59;UBERON:0004535,4.43e-10,109;UBERON:0006914,1.56e-09,25;UBERON:0003103,6.69e-09,68;UBERON:0000483,1.76e-08,306;UBERON:0000119,2.88e-08,309;UBERON:0002298,3.03e-08,6;UBERON:0003915,4.83e-08,9;UBERON:0004700,4.83e-08,9;UBERON:0001917,4.83e-08,9;UBERON:0003978,6.78e-08,3;UBERON:0009751,6.78e-08,3;UBERON:0000946,6.78e-08,3;UBERON:0002523,6.78e-08,3;UBERON:0005983,6.78e-08,3;UBERON:0002165,6.78e-08,3;UBERON:0002062,6.78e-08,3;UBERON:0007280,6.78e-08,3;UBERON:0001638,8.00e-08,9;UBERON:0003920,8.00e-08,9;UBERON:0004582,8.00e-08,9;UBERON:0003076,1.30e-07,15;UBERON:0003057,1.30e-07,15;UBERON:0002240,2.51e-07,3;UBERON:0005174,2.51e-07,3;UBERON:0001137,2.51e-07,3;UBERON:0002465,2.55e-07,10;UBERON:0004151,3.59e-07,3 | |||
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| ||
|short_description=p11@RAPGEF5 | |||
}} | }} |
Latest revision as of 18:41, 17 September 2015
Short description: | p11@RAPGEF5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_11_at_RAPGEF5_5end |
Coexpression cluster: | C1887_lung_Endothelial_adipose_heart_spleen_Hepatocyte_penis |
Association with transcript: | 18bp_to_ENST00000420196_5end |
EntrezGene: | RAPGEF5 |
HGNC: | 16862 |
UniProt: | C9JHM4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 1.39e-21 | 24 |
endothelial cell | 3.53e-18 | 36 |
blood vessel endothelial cell | 2.18e-14 | 18 |
embryonic blood vessel endothelial progenitor cell | 2.18e-14 | 18 |
meso-epithelial cell | 2.02e-13 | 45 |
lining cell | 3.14e-09 | 58 |
barrier cell | 3.14e-09 | 58 |
lymphangioblast | 4.23e-09 | 6 |
endothelial cell of lymphatic vessel | 4.23e-09 | 6 |
vascular lymphangioblast | 4.23e-09 | 6 |
vein endothelial cell | 1.33e-08 | 6 |
endothelial cell of artery | 4.83e-08 | 9 |
endothelial cell of umbilical vein | 4.52e-07 | 3 |