FFCP PHASE1:Hg19::chr13:53313905..53313964,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=11061 | |EntrezGene=11061 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17005 | |HGNC=17005 | ||
|TSSclassifier=strong | |||
|UniProt=O75829 | |UniProt=O75829 | ||
|association_with_transcript=0bp_to_ENST00000377962,ENST00000448904,NM_001011705,NM_007015,uc001vhf.2,uc001vhg.2,uc001vhh.2_5end | |association_with_transcript=0bp_to_ENST00000377962,ENST00000448904,NM_001011705,NM_007015,uc001vhf.2,uc001vhg.2,uc001vhh.2_5end | ||
|cluster_id=chr13:53313905..53313964,- | |||
|coexpression_cluster_id=C49 | |coexpression_cluster_id=C49 | ||
|description=CAGE_peak_1_at_LECT1_5end | |description=CAGE_peak_1_at_LECT1_5end | ||
|id=chr13:53313905..53313964,- | |id=chr13:53313905..53313964,- | ||
|ontology_enrichment_celltype=CL:0000540!2.05e-12!6;CL:0000031!2.05e-12!6;CL:0000404!2.05e-12!6;CL:0000047!3.61e-12!8;CL:0002322!1.15e-11!5;CL:0002319!9.41e-07!25 | |ontology_enrichment_celltype=CL:0000540!2.05e-12!6;CL:0000031!2.05e-12!6;CL:0000404!2.05e-12!6;CL:0000047!3.61e-12!8;CL:0002322!1.15e-11!5;CL:0002319!9.41e-07!25 | ||
|ontology_enrichment_celltype_v019=CL:0002322;3.78e-27;5!CL:0000540;4.05e-14;6!CL:0000404;4.05e-14;6!CL:0002321;7.39e-09;15!CL:0002319;2.51e-08;25!CL:0002605;1.48e-07;3!CL:0000039;3.38e-07;7!CL:0000586;3.38e-07;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,3.69e-27,5;CL:0000047,1.02e-15,8;CL:0000540,5.13e-14,6;CL:0000031,5.13e-14,6;CL:0000404,5.13e-14,6;CL:0002319,2.71e-08,25;CL:0002605,1.21e-07,3;CL:0000039,3.38e-07,7;CL:0000586,3.38e-07,7 | |||
|ontology_enrichment_development_v019=CL:0000031;4.05e-14;6 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005743!1.23e-47!86;UBERON:0001049!5.01e-47!57;UBERON:0005068!5.01e-47!57;UBERON:0006241!5.01e-47!57;UBERON:0007135!5.01e-47!57;UBERON:0001017!3.92e-46!82;UBERON:0000073!1.08e-41!94;UBERON:0001016!1.08e-41!94;UBERON:0002780!4.47e-41!41;UBERON:0001890!4.47e-41!41;UBERON:0006240!4.47e-41!41;UBERON:0003080!7.14e-40!42;UBERON:0002616!6.44e-38!59;UBERON:0003075!6.78e-37!86;UBERON:0007284!6.78e-37!86;UBERON:0002346!1.30e-36!90;UBERON:0003056!1.31e-33!61;UBERON:0000955!6.32e-32!69;UBERON:0006238!6.32e-32!69;UBERON:0001893!1.70e-30!34;UBERON:0007023!4.94e-30!115;UBERON:0002791!4.41e-29!33;UBERON:0000153!1.62e-28!129;UBERON:0007811!1.62e-28!129;UBERON:0002020!5.22e-28!34;UBERON:0003528!5.22e-28!34;UBERON:0000924!1.61e-27!173;UBERON:0006601!1.61e-27!173;UBERON:0001869!2.21e-27!32;UBERON:0004121!3.04e-27!169;UBERON:0000033!2.07e-26!123;UBERON:0000956!2.87e-19!25;UBERON:0000203!2.87e-19!25;UBERON:0002619!5.48e-15!22;UBERON:0001950!1.18e-14!20;UBERON:0001894!1.57e-12!7;UBERON:0006222!1.57e-12!7;UBERON:0002308!2.55e-10!9;UBERON:0000125!2.55e-10!9;UBERON:0002420!3.12e-10!9;UBERON:0007245!3.12e-10!9;UBERON:0010009!3.12e-10!9;UBERON:0010011!3.12e-10!9;UBERON:0000454!3.12e-10!9;UBERON:0009663!3.67e-10!7;UBERON:0000025!3.64e-09!194;UBERON:0000477!3.95e-09!286;UBERON:0003076!1.10e-08!15;UBERON:0003057!1.10e-08!15;UBERON:0004111!2.92e-08!241;UBERON:0000473!3.62e-08!8;UBERON:0000922!1.41e-07!612;UBERON:0003296!1.58e-07!4;UBERON:0010133!1.58e-07!4;UBERON:0000468!3.53e-07!659 | |ontology_enrichment_uberon=UBERON:0005743!1.23e-47!86;UBERON:0001049!5.01e-47!57;UBERON:0005068!5.01e-47!57;UBERON:0006241!5.01e-47!57;UBERON:0007135!5.01e-47!57;UBERON:0001017!3.92e-46!82;UBERON:0000073!1.08e-41!94;UBERON:0001016!1.08e-41!94;UBERON:0002780!4.47e-41!41;UBERON:0001890!4.47e-41!41;UBERON:0006240!4.47e-41!41;UBERON:0003080!7.14e-40!42;UBERON:0002616!6.44e-38!59;UBERON:0003075!6.78e-37!86;UBERON:0007284!6.78e-37!86;UBERON:0002346!1.30e-36!90;UBERON:0003056!1.31e-33!61;UBERON:0000955!6.32e-32!69;UBERON:0006238!6.32e-32!69;UBERON:0001893!1.70e-30!34;UBERON:0007023!4.94e-30!115;UBERON:0002791!4.41e-29!33;UBERON:0000153!1.62e-28!129;UBERON:0007811!1.62e-28!129;UBERON:0002020!5.22e-28!34;UBERON:0003528!5.22e-28!34;UBERON:0000924!1.61e-27!173;UBERON:0006601!1.61e-27!173;UBERON:0001869!2.21e-27!32;UBERON:0004121!3.04e-27!169;UBERON:0000033!2.07e-26!123;UBERON:0000956!2.87e-19!25;UBERON:0000203!2.87e-19!25;UBERON:0002619!5.48e-15!22;UBERON:0001950!1.18e-14!20;UBERON:0001894!1.57e-12!7;UBERON:0006222!1.57e-12!7;UBERON:0002308!2.55e-10!9;UBERON:0000125!2.55e-10!9;UBERON:0002420!3.12e-10!9;UBERON:0007245!3.12e-10!9;UBERON:0010009!3.12e-10!9;UBERON:0010011!3.12e-10!9;UBERON:0000454!3.12e-10!9;UBERON:0009663!3.67e-10!7;UBERON:0000025!3.64e-09!194;UBERON:0000477!3.95e-09!286;UBERON:0003076!1.10e-08!15;UBERON:0003057!1.10e-08!15;UBERON:0004111!2.92e-08!241;UBERON:0000473!3.62e-08!8;UBERON:0000922!1.41e-07!612;UBERON:0003296!1.58e-07!4;UBERON:0010133!1.58e-07!4;UBERON:0000468!3.53e-07!659 | ||
|ontology_enrichment_uberon_v019=UBERON:0009663;2.80e-17;7!UBERON:0002420;2.12e-13;9!UBERON:0000125;2.12e-13;9!UBERON:0007245;2.12e-13;9!UBERON:0002308;2.12e-13;9!UBERON:0010009;2.12e-13;9!UBERON:0010011;2.12e-13;9!UBERON:0000454;2.12e-13;9!UBERON:0000922;5.66e-13;49!UBERON:0000369;1.17e-11;4!UBERON:0002435;1.17e-11;4!UBERON:0000204;1.17e-11;4!UBERON:0001829;3.16e-11;2!UBERON:0000341;3.88e-11;2!UBERON:0001044;3.48e-08;6!UBERON:0003293;3.48e-08;6!UBERON:0003294;3.48e-08;6!UBERON:0010047;3.48e-08;6!UBERON:0003408;3.48e-08;6!UBERON:0000167;3.48e-08;6!UBERON:0005383;1.48e-07;3!UBERON:0005382;1.48e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0009663,2.96e-17,7;UBERON:0002420,2.21e-13,9;UBERON:0000125,2.21e-13,9;UBERON:0007245,2.21e-13,9;UBERON:0002308,2.21e-13,9;UBERON:0010009,2.21e-13,9;UBERON:0010011,2.21e-13,9;UBERON:0000454,2.21e-13,9;UBERON:0000369,9.87e-12,4;UBERON:0002435,9.87e-12,4;UBERON:0000204,9.87e-12,4;UBERON:0010082,9.87e-12,4;UBERON:0001829,3.00e-11,2;UBERON:0000341,4.52e-11,2;UBERON:0001017,3.74e-10,81;UBERON:0004121,6.54e-09,171;UBERON:0000924,6.54e-09,171;UBERON:0006601,6.54e-09,171;UBERON:0001016,7.37e-09,89;UBERON:0001044,3.44e-08,6;UBERON:0003293,3.44e-08,6;UBERON:0003294,3.44e-08,6;UBERON:0010047,3.44e-08,6;UBERON:0000167,3.44e-08,6;UBERON:0005383,1.13e-07,3;UBERON:0005382,1.13e-07,3;UBERON:0001049,8.59e-07,56;UBERON:0005068,8.59e-07,56;UBERON:0006241,8.59e-07,56;UBERON:0007135,8.59e-07,56 | |||
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| ||
|short_description=p1@LECT1 | |short_description=p1@LECT1 | ||
}} | }} |
Latest revision as of 19:51, 17 September 2015
Short description: | p1@LECT1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LECT1_5end |
Coexpression cluster: | C49_H9_iPS_testicular_HES3GFP_teratocarcinoma_hepatoblastoma_choriocarcinoma |
Association with transcript: | 0bp_to_ENST00000377962, ENST00000448904, NM_001011705, NM_007015, uc001vhf.2, uc001vhg.2, uc001vhh.2_5end |
EntrezGene: | LECT1 |
HGNC: | 17005 |
UniProt: | O75829 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 3.69e-27 | 5 |
neuronal stem cell | 1.02e-15 | 8 |
neuron | 5.13e-14 | 6 |
neuroblast | 5.13e-14 | 6 |
electrically signaling cell | 5.13e-14 | 6 |
neural cell | 2.71e-08 | 25 |
astrocyte of the cerebral cortex | 1.21e-07 | 3 |
germ line cell | 3.38e-07 | 7 |
germ cell | 3.38e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
telencephalic nucleus | 2.96e-17 | 7 |
basal ganglion | 2.21e-13 | 9 |
neural nucleus | 2.21e-13 | 9 |
nuclear complex of neuraxis | 2.21e-13 | 9 |
nucleus of brain | 2.21e-13 | 9 |
aggregate regional part of brain | 2.21e-13 | 9 |
collection of basal ganglia | 2.21e-13 | 9 |
cerebral subcortex | 2.21e-13 | 9 |
corpus striatum | 9.87e-12 | 4 |
striatum | 9.87e-12 | 4 |
ventral part of telencephalon | 9.87e-12 | 4 |
future corpus striatum | 9.87e-12 | 4 |
major salivary gland | 3.00e-11 | 2 |
throat | 4.52e-11 | 2 |
central nervous system | 3.74e-10 | 81 |
ectoderm-derived structure | 6.54e-09 | 171 |
ectoderm | 6.54e-09 | 171 |
presumptive ectoderm | 6.54e-09 | 171 |
nervous system | 7.37e-09 | 89 |
saliva-secreting gland | 3.44e-08 | 6 |
gland of oral region | 3.44e-08 | 6 |
gland of foregut | 3.44e-08 | 6 |
oral gland | 3.44e-08 | 6 |
oral cavity | 3.44e-08 | 6 |
caudate-putamen | 1.13e-07 | 3 |
dorsal striatum | 1.13e-07 | 3 |
neural tube | 8.59e-07 | 56 |
neural rod | 8.59e-07 | 56 |
future spinal cord | 8.59e-07 | 56 |
neural keel | 8.59e-07 | 56 |