FFCP PHASE1:Hg19::chr9:79320602..79320607,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene=158471 | |EntrezGene=158471 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | ||
|HGNC=25209 | |HGNC=25209 | ||
|TSSclassifier= | |TSSclassifier=strong | ||
|UniProt=E9PCH2 | |UniProt=E9PCH2 | ||
|association_with_transcript=-205bp_to_ENST00000441554_5end | |association_with_transcript=-205bp_to_ENST00000441554_5end | ||
|cluster_id=chr9:79320602..79320607,- | |||
|coexpression_cluster_id=C38 | |coexpression_cluster_id=C38 | ||
|description=CAGE_peak_33_at_PRUNE2_5end | |description=CAGE_peak_33_at_PRUNE2_5end | ||
Latest revision as of 21:58, 17 September 2015
| Short description: | p33@PRUNE2 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_33_at_PRUNE2_5end |
| Coexpression cluster: | C38_extraskeletal_rhabdomyosarcoma_adrenal_rectal_mesothelioma_lung_Wilms |
| Association with transcript: | -205bp_to_ENST00000441554_5end |
| EntrezGene: | PRUNE2 |
| HGNC: | 25209 |
| UniProt: | E9PCH2 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p33@PRUNE2 |
|---|
0.0
0.5
1.0
1.5
2.0
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| light melanocyte | 4.09e-23 | 3 |
| chondroblast | 2.19e-12 | 6 |
| chondrocyte | 2.19e-12 | 6 |
| GAG secreting cell | 1.04e-08 | 9 |
| carbohydrate secreting cell | 1.04e-08 | 9 |
| melanocyte | 6.56e-08 | 10 |
| melanoblast | 6.56e-08 | 10 |
Showing 1 to 7 of 7 entries
| Ontology term | p-value | n |
|---|---|---|
| cranial nerve II | 2.39e-66 | 1 |
| cranial nerve | 2.39e-66 | 1 |
| nerve trunk | 2.39e-66 | 1 |
| nerve connecting eye with brain | 2.39e-66 | 1 |
| nerve | 2.39e-66 | 1 |
| retinal neural layer | 2.39e-66 | 1 |
| presumptive neural retina | 2.39e-66 | 1 |
| neural tissue | 5.04e-34 | 2 |
| multi cell component structure | 5.04e-34 | 2 |
| neuron projection bundle | 5.04e-34 | 2 |
Showing 1 to 10 of 17 entries
| Ontology term | p-value | n |
|---|---|---|
| chondrosarcoma | 1.23e-66 | 1 |
| extraosseous chondrosarcoma | 1.23e-66 | 1 |
| myxoid chondrosarcoma | 1.23e-66 | 1 |
| extraskeletal myxoid chondrosarcoma | 1.23e-66 | 1 |
| connective tissue cancer | 2.19e-12 | 6 |
| musculoskeletal system cancer | 2.19e-12 | 6 |
Showing 1 to 6 of 6 entries
