FFCP PHASE1:Hg19::chr12:25205401..25205418,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4033 | |EntrezGene=4033 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6690 | |HGNC=6690 | ||
|TSSclassifier=strong | |||
|UniProt=Q12912,G3V513 | |UniProt=Q12912,G3V513 | ||
|association_with_transcript=-27bp_to_ENST00000354454,ENST00000557489_5end | |association_with_transcript=-27bp_to_ENST00000354454,ENST00000557489_5end | ||
|cluster_id=chr12:25205401..25205418,+ | |||
|coexpression_cluster_id=C62 | |||
|description=CAGE_peak_7_at_LRMP_5end | |description=CAGE_peak_7_at_LRMP_5end | ||
|id=chr12:25205401..25205418,+ | |id=chr12:25205401..25205418,+ | ||
|ontology_enrichment_celltype=CL:0000542!6.10e-23!53;CL:0000051!6.10e-23!53;CL:0000838!2.93e-21!52;CL:0000988!4.91e-18!182;CL:0002032!1.08e-17!165;CL:0000837!1.08e-17!165;CL:0000037!1.28e-17!172;CL:0000566!1.28e-17!172;CL:0000738!8.68e-17!140;CL:0002031!5.27e-15!124;CL:0000945!4.29e-14!24;CL:0000826!4.29e-14!24;CL:0002087!1.22e-12!119;CL:0000817!3.12e-08!3;CL:0000624!4.93e-07!6;CL:0000084!7.12e-07!25;CL:0000827!7.12e-07!25 | |ontology_enrichment_celltype=CL:0000542!6.10e-23!53;CL:0000051!6.10e-23!53;CL:0000838!2.93e-21!52;CL:0000988!4.91e-18!182;CL:0002032!1.08e-17!165;CL:0000837!1.08e-17!165;CL:0000037!1.28e-17!172;CL:0000566!1.28e-17!172;CL:0000738!8.68e-17!140;CL:0002031!5.27e-15!124;CL:0000945!4.29e-14!24;CL:0000826!4.29e-14!24;CL:0002087!1.22e-12!119;CL:0000817!3.12e-08!3;CL:0000624!4.93e-07!6;CL:0000084!7.12e-07!25;CL:0000827!7.12e-07!25 | ||
|ontology_enrichment_celltype_v019=CL:0000945;1.16e-24;24!CL:0000542;8.14e-08;53!CL:0000775;9.37e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,1.18e-24,24;CL:0000826,1.18e-24,24;CL:0000542,6.17e-15,53;CL:0000051,6.17e-15,53;CL:0000838,2.61e-11,52;CL:0000738,4.68e-09,136;CL:0002032,1.56e-07,161;CL:0000837,1.56e-07,161;CL:0000037,3.46e-07,168;CL:0000988,8.81e-07,177;CL:0000775,9.12e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0001045;5.26e-18;1!CL:0000051;8.14e-08;53 | |||
|ontology_enrichment_disease=DOID:0060058!8.38e-17!10;DOID:2531!2.97e-15!51;DOID:0060083!2.97e-15!51 | |ontology_enrichment_disease=DOID:0060058!8.38e-17!10;DOID:2531!2.97e-15!51;DOID:0060083!2.97e-15!51 | ||
|ontology_enrichment_disease_v019=DOID:0060058;5.02e-27;10!DOID:12603;1.12e-17;1!DOID:2355;1.12e-17;1!DOID:74;1.64e-09;2 | |||
|ontology_enrichment_disease_v019_2=DOID:0060058,5.94e-27,10;DOID:12603,8.72e-18,1;DOID:2355,1.70e-17,1;DOID:74,2.02e-09,2;DOID:2531,3.34e-08,51;DOID:0060083,3.34e-08,51 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0001154;5.26e-18;1!UBERON:0001153;5.26e-18;1!UBERON:0009854;5.26e-18;1!UBERON:0002372;6.23e-18;1!UBERON:0001961;6.23e-18;1!UBERON:0001744;6.23e-18;1!UBERON:0001042;6.23e-18;1!UBERON:0001735;6.23e-18;1!UBERON:0006562;1.22e-09;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001154,5.26e-18,1;UBERON:0001153,5.26e-18,1;UBERON:0001045,5.26e-18,1;UBERON:0002372,6.23e-18,1;UBERON:0001961,6.23e-18,1;UBERON:0001744,6.23e-18,1;UBERON:0001735,6.23e-18,1 | |||
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| ||
|short_description=p7@LRMP | |short_description=p7@LRMP | ||
}} | }} |
Latest revision as of 22:23, 17 September 2015
Short description: | p7@LRMP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_LRMP_5end |
Coexpression cluster: | C62_Burkitt_tonsil_CD19_submaxillary_spleen_salivary_lymph |
Association with transcript: | -27bp_to_ENST00000354454, ENST00000557489_5end |
EntrezGene: | LRMP |
HGNC: | 6690 |
UniProt: | Q12912G3V513 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 1.18e-24 | 24 |
pro-B cell | 1.18e-24 | 24 |
lymphocyte | 6.17e-15 | 53 |
common lymphoid progenitor | 6.17e-15 | 53 |
lymphoid lineage restricted progenitor cell | 2.61e-11 | 52 |
leukocyte | 4.68e-09 | 136 |
hematopoietic oligopotent progenitor cell | 1.56e-07 | 161 |
hematopoietic multipotent progenitor cell | 1.56e-07 | 161 |
hematopoietic stem cell | 3.46e-07 | 168 |
hematopoietic cell | 8.81e-07 | 177 |
neutrophil | 9.12e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
vermiform appendix | 5.26e-18 | 1 |
caecum | 5.26e-18 | 1 |
midgut | 5.26e-18 | 1 |
tonsil | 6.23e-18 | 1 |
mucosa-associated lymphoid tissue | 6.23e-18 | 1 |
lymphoid tissue | 6.23e-18 | 1 |
tonsillar ring | 6.23e-18 | 1 |
Ontology term | p-value | n |
---|---|---|
lymphoma | 5.94e-27 | 10 |
acute leukemia | 8.72e-18 | 1 |
anemia | 1.70e-17 | 1 |
hematopoietic system disease | 2.02e-09 | 2 |
hematologic cancer | 3.34e-08 | 51 |
immune system cancer | 3.34e-08 | 51 |