FFCP PHASE1:Hg19::chr5:53606354..53606372,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=54622 | |EntrezGene=54622 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25945 | |HGNC=25945 | ||
|TSSclassifier=strong | |||
|UniProt=Q9NXU5 | |UniProt=Q9NXU5 | ||
|association_with_transcript=30bp_to_ENST00000504924,ENST00000505383,NM_019087,uc003jpg.1,uc010ivs.1_5end | |association_with_transcript=30bp_to_ENST00000504924,ENST00000505383,NM_019087,uc003jpg.1,uc010ivs.1_5end | ||
|cluster_id=chr5:53606354..53606372,- | |||
|coexpression_cluster_id=C4505 | |||
|description=CAGE_peak_3_at_ARL15_5end | |description=CAGE_peak_3_at_ARL15_5end | ||
|id=chr5:53606354..53606372,- | |id=chr5:53606354..53606372,- | ||
|ontology_enrichment_celltype=CL:0000766!2.43e-10!76;CL:0000738!7.06e-10!140;CL:0000839!3.05e-09!70;CL:0002031!4.59e-09!124;CL:0000037!9.38e-09!172;CL:0000566!9.38e-09!172;CL:0002087!1.02e-08!119;CL:0000557!3.37e-08!71;CL:0002032!4.11e-08!165;CL:0000837!4.11e-08!165;CL:0002194!9.26e-08!63;CL:0000576!9.26e-08!63;CL:0000040!9.26e-08!63;CL:0000559!9.26e-08!63;CL:0002009!2.16e-07!65;CL:0000763!3.95e-07!112;CL:0000049!3.95e-07!112 | |ontology_enrichment_celltype=CL:0000766!2.43e-10!76;CL:0000738!7.06e-10!140;CL:0000839!3.05e-09!70;CL:0002031!4.59e-09!124;CL:0000037!9.38e-09!172;CL:0000566!9.38e-09!172;CL:0002087!1.02e-08!119;CL:0000557!3.37e-08!71;CL:0002032!4.11e-08!165;CL:0000837!4.11e-08!165;CL:0002194!9.26e-08!63;CL:0000576!9.26e-08!63;CL:0000040!9.26e-08!63;CL:0000559!9.26e-08!63;CL:0002009!2.16e-07!65;CL:0000763!3.95e-07!112;CL:0000049!3.95e-07!112 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,6.66e-11,72;CL:0000839,6.80e-10,66;CL:0000738,9.10e-10,136;CL:0002031,3.05e-09,120;CL:0000557,5.53e-09,67;CL:0000037,7.29e-09,168;CL:0002087,8.14e-09,115;CL:0002194,2.72e-08,59;CL:0000576,2.72e-08,59;CL:0000040,2.72e-08,59;CL:0000559,2.72e-08,59;CL:0002032,3.18e-08,161;CL:0000837,3.18e-08,161;CL:0002009,5.93e-08,61;CL:0000763,1.57e-07,108;CL:0000049,1.57e-07,108 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.41e-25!115;UBERON:0002390!2.03e-09!102;UBERON:0003061!2.03e-09!102;UBERON:0002193!3.11e-09!112;UBERON:0003080!3.91e-07!42;UBERON:0001017!4.04e-07!82;UBERON:0001049!6.06e-07!57;UBERON:0005068!6.06e-07!57;UBERON:0006241!6.06e-07!57;UBERON:0007135!6.06e-07!57 | |ontology_enrichment_uberon=UBERON:0007023!3.41e-25!115;UBERON:0002390!2.03e-09!102;UBERON:0003061!2.03e-09!102;UBERON:0002193!3.11e-09!112;UBERON:0003080!3.91e-07!42;UBERON:0001017!4.04e-07!82;UBERON:0001049!6.06e-07!57;UBERON:0005068!6.06e-07!57;UBERON:0006241!6.06e-07!57;UBERON:0007135!6.06e-07!57 | ||
|ontology_enrichment_uberon_v019=UBERON:0007023;5.72e-08;114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.69e-26,114;UBERON:0002193,3.09e-10,108;UBERON:0002390,3.50e-10,98;UBERON:0003061,3.50e-10,98;UBERON:0002405,3.19e-08,93;UBERON:0001017,2.67e-07,81;UBERON:0001474,4.21e-07,82;UBERON:0002371,5.66e-07,76;UBERON:0001049,5.71e-07,56;UBERON:0005068,5.71e-07,56;UBERON:0006241,5.71e-07,56;UBERON:0007135,5.71e-07,56;UBERON:0000160,9.24e-07,17;UBERON:0002780,9.35e-07,41;UBERON:0001890,9.35e-07,41;UBERON:0003080,9.35e-07,41;UBERON:0006240,9.35e-07,41 | |||
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| ||
|short_description=p3@ARL15 | |short_description=p3@ARL15 | ||
}} | }} |
Latest revision as of 03:09, 18 September 2015
Short description: | p3@ARL15 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_ARL15_5end |
Coexpression cluster: | C4505_acute_pineal_skin_occipital_parietal_colon_brain |
Association with transcript: | 30bp_to_ENST00000504924, ENST00000505383, NM_019087, uc003jpg.1, uc010ivs.1_5end |
EntrezGene: | ARL15 |
HGNC: | 25945 |
UniProt: | Q9NXU5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 6.66e-11 | 72 |
myeloid lineage restricted progenitor cell | 6.80e-10 | 66 |
leukocyte | 9.10e-10 | 136 |
hematopoietic lineage restricted progenitor cell | 3.05e-09 | 120 |
granulocyte monocyte progenitor cell | 5.53e-09 | 67 |
hematopoietic stem cell | 7.29e-09 | 168 |
nongranular leukocyte | 8.14e-09 | 115 |
monopoietic cell | 2.72e-08 | 59 |
monocyte | 2.72e-08 | 59 |
monoblast | 2.72e-08 | 59 |
promonocyte | 2.72e-08 | 59 |
hematopoietic oligopotent progenitor cell | 3.18e-08 | 161 |
hematopoietic multipotent progenitor cell | 3.18e-08 | 161 |
macrophage dendritic cell progenitor | 5.93e-08 | 61 |
myeloid cell | 1.57e-07 | 108 |
common myeloid progenitor | 1.57e-07 | 108 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.69e-26 | 114 |
hemolymphoid system | 3.09e-10 | 108 |
hematopoietic system | 3.50e-10 | 98 |
blood island | 3.50e-10 | 98 |
immune system | 3.19e-08 | 93 |
central nervous system | 2.67e-07 | 81 |
bone element | 4.21e-07 | 82 |
bone marrow | 5.66e-07 | 76 |
neural tube | 5.71e-07 | 56 |
neural rod | 5.71e-07 | 56 |
future spinal cord | 5.71e-07 | 56 |
neural keel | 5.71e-07 | 56 |
intestine | 9.24e-07 | 17 |
regional part of forebrain | 9.35e-07 | 41 |
forebrain | 9.35e-07 | 41 |
anterior neural tube | 9.35e-07 | 41 |
future forebrain | 9.35e-07 | 41 |