FFCP PHASE1:Hg19::chr8:38758541..38758557,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr8:38758541..38758557,+ to FFCP PHASE1:Hg19::chr8:38758541..38758557,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=59339 | |EntrezGene=59339 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14336 | |HGNC=14336 | ||
|TSSclassifier=strong | |||
|UniProt=Q9HB19,E5RHB5,A8K727 | |UniProt=Q9HB19,E5RHB5,A8K727 | ||
|association_with_transcript=-195bp_to_ENST00000420274,ENST00000521746,NM_021623,uc003xmi.3,uc011lce.1_5end | |||
|cluster_id=chr8:38758541..38758557,+ | |||
|description=CAGE_peak_10_at_PLEKHA2_5end | |||
|id=chr8:38758541..38758557,+ | |||
|ontology_enrichment_celltype=CL:0000945!3.98e-09!24;CL:0000826!3.98e-09!24;CL:0000236!3.26e-07!14 | |||
|ontology_enrichment_celltype_v019=CL:0000236;4.35e-17;13!CL:0000945;1.01e-12;24!CL:0000784;1.74e-09;3!CL:0001014;2.52e-07;2!CL:0001016;2.52e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000236,8.30e-16,14;CL:0000945,8.68e-13,24;CL:0000826,8.68e-13,24;CL:0000784,3.15e-09,3;CL:0001014,1.79e-07,2;CL:0001016,1.79e-07,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!6.46e-12!115;UBERON:0002780!4.12e-09!41;UBERON:0001890!4.12e-09!41;UBERON:0006240!4.12e-09!41;UBERON:0002616!6.01e-09!59;UBERON:0001893!8.24e-09!34;UBERON:0003075!1.06e-08!86;UBERON:0007284!1.06e-08!86;UBERON:0003080!1.49e-08!42;UBERON:0002619!1.66e-08!22;UBERON:0002791!2.47e-08!33;UBERON:0001869!2.95e-08!32;UBERON:0000955!4.54e-08!69;UBERON:0006238!4.54e-08!69;UBERON:0002346!1.16e-07!90;UBERON:0003056!1.20e-07!61;UBERON:0002020!1.37e-07!34;UBERON:0003528!1.37e-07!34;UBERON:0001950!1.91e-07!20;UBERON:0001049!2.26e-07!57;UBERON:0005068!2.26e-07!57;UBERON:0006241!2.26e-07!57;UBERON:0007135!2.26e-07!57 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;2.57e-22;22!UBERON:0001950;2.88e-21;20!UBERON:0000956;2.45e-19;25!UBERON:0000203;2.45e-19;25!UBERON:0001869;1.30e-16;32!UBERON:0001893;2.29e-15;34!UBERON:0002791;1.13e-14;32!UBERON:0003528;2.02e-14;34!UBERON:0002020;2.02e-14;34!UBERON:0000200;1.53e-12;6!UBERON:0002780;2.48e-10;41!UBERON:0001890;2.48e-10;41!UBERON:0001870;6.20e-10;3!UBERON:0000349;1.12e-09;5!UBERON:0002702;2.52e-07;2!UBERON:0001871;6.53e-07;6!UBERON:0000073;7.15e-07;53!UBERON:0002616;7.15e-07;53!UBERON:0001876;7.19e-07;2!UBERON:0002133;7.19e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002619,1.79e-23,22;UBERON:0001950,2.69e-22,20;UBERON:0000956,2.39e-20,25;UBERON:0000203,2.39e-20,25;UBERON:0001869,5.24e-20,32;UBERON:0001893,1.26e-18,34;UBERON:0002791,1.26e-17,32;UBERON:0003528,2.13e-16,34;UBERON:0002020,2.13e-16,34;UBERON:0002780,7.80e-15,41;UBERON:0001890,7.80e-15,41;UBERON:0003080,7.80e-15,41;UBERON:0006240,7.80e-15,41;UBERON:0000200,1.79e-12,6;UBERON:0003056,1.70e-11,61;UBERON:0000073,1.18e-10,53;UBERON:0002616,1.18e-10,53;UBERON:0000349,2.89e-10,5;UBERON:0001870,5.64e-10,3;UBERON:0001049,6.84e-10,56;UBERON:0005068,6.84e-10,56;UBERON:0006241,6.84e-10,56;UBERON:0007135,6.84e-10,56;UBERON:0003075,1.32e-09,82;UBERON:0007284,1.32e-09,82;UBERON:0002346,6.08e-09,86;UBERON:0000955,1.73e-08,68;UBERON:0006238,1.73e-08,68;UBERON:0007023,4.93e-08,114;UBERON:0001871,1.65e-07,6;UBERON:0001017,1.91e-07,81;UBERON:0001876,2.16e-07,2;UBERON:0002702,2.53e-07,2;UBERON:0010314,5.51e-07,132;UBERON:0002133,7.53e-07,2 | |||
|phase1_expression=0.181678379270557,0,0,0,0,0.872338524100369,0,0,0,0.245733936501509,0,0.655324116390517,0,0.247532705920093,0.331397375727916,0,0,0,0,0.61560529038394,0.612002073732759,0.313454721478088,0,0,0,0.534893840235659,0.164201178899891,0.314843125254717,0.786728553697808,0,0.154816123316076,0,0,0,1.70427841276664,1.13735385989937,0,0,0.601633342410425,0,0.447830948479849,0,0.257575567634187,0,0,0.242584061187816,0.232429036905685,0.411167888021826,0,0,0,0,0,0,0,0.188242339542605,0.272906150057846,0,0.306083892370903,0.320929027076094,0,0.329851300186716,0,0.426224750532694,0,0,0,0,0.521482918420201,0,0,0,0,0,0.425208599930087,0.419317291016752,0,0,0.16072558669708,1.14005097496499,0,0.182664153764634,1.75996244461323,2.73069305631066,1.77901850772711,1.28019066769952,1.20118796110804,0.574752439954483,0,0.954053754535364,1.1384259382189,1.17447437874188,1.91136614062614,0,0.560508562981536,0.526768169550154,0,0,0,0,0,0,1.94826728407911,0.111410456885174,0.294605907474837,0,0,0,0.260118695119756,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0,0,0,0,0,0,0.50133791063589,0.579386075843295,0,0,0.567208902984407,1.33037638477538,0.702678285545008,0.589405839739707,0,0,0.324547393654683,0.174129737299267,0.664789802594326,1.19245312152671,1.14398982156026,1.48583000531826,0.198762407366705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17859945656816,0,0,0,0,0.183201743930407,0,0,0.436094052142534,0.496971951695318,0.12663051166458,0,0,0,0,1.06748995729705,0.49333509683432,0,0,0,0.908144565869588,0.576175924479999,0.234321431833797,0,0,0,0.117434498643765,0.323745888736263,0,0.204154171254893,0.245668634623536,0,0,0.247266929278557,0,1.43723628363248,0.168336113954066,0,0,0,0,0,0.226864366320042,0.179389635688862,0.213557388818567,0,0.600182192168805,0.206105058476878,0,0,0,0.292311015483596,0,0.0920498986422993,0,0,0.10075209822764,0.508681776931463,0,0,0,0.731842236777572,0.265059536642971,0.348581828608555,0.414644220061482,0.504641701751257,0,0,0,0,0,0.721879481669586,0.236613600079688,0,0.241011029883482,0.110293972732394,0,0,0.269662616320329,0.784885860501384,0.38474715694639,0,0,1.6462960453256,1.47008711385542,0,0,0,0.441463099414651,0.122988438543114,0.171567810298526,0,0,0.100528972411631,0.0925884451585296,0.325808305310325,0,0,0.231860809950154,0,0.144366447761074,0,0.380508304469197,0,0,0,0.702012795417713,0.743155811443641,0,0.335964256397719,0,0.0895585227028483,0.290633938513962,0,0,0.088048434013226,0.207328115540772,0.288239906833923,0,0.380987365753014,0,1.17217447210047,0,0.308482478109971,0.300343057843917,0,0,0.87192013766656,0.07333828582095,0,0,0,0.26593811658487,2.08014873822732,0.257207374262142,0,0.532844358032199,0.428933980974443,0,0,0,0.355391948742546,0,0,0,0.199945982364114,0,0,0,0,0,0,0,0.410952645100767,0.358121926479791,0.784596007954691,0.197030760201927,0,0.128343036279748,0,0,0,0,0,0,0,0.828831026872071,0.49076596687656,0,0.813795071099207,0,0.178428988797162,0.157702415033935,0.234282829985426,0.601892199455438,0,2.0694614258501,1.32845119707087,0.553107505625109,0,0.587403472388222,0.686286847621712,0.206768026122887,0,0.320182673410333,0.303127571446259,0,0.30239029332968,0,0.153461973288062,0,0,0,0.160853921143607,1.48418066444991,0,0,0,0,0,0.120859449591622,0.200506470303285,0.184161977871793,0.229628896329213,0.364182336013434,0,0,0.539107359730903,0.784349769176855,1.46139224653261,0.633309773357254,0,0.170093705276516,0.215915916102139,1.54227252690289,0.541892875087706,0.501689773854853,0.254876273045038,0,0,0,0,0,1.64007322849853,0.976135183992909,0.206082023295445,0.0915694648183434,0.165018999841176,0.574265537996172,0.650060246036521,0,0.096670718292122,0.308097234229289,0.307007349452259,0,0.214840489736547,0.145016693914229,0.0852266274161009,0.0890320356467374,0,0.192190067365106,0.127612712494584,0.30347334256665,0.929691098594572,0,0,0.308033580176089,0,0.869932992075073,0.37064843820784,0.286249773483982,0.372158369359667,0.316379424718726,0.190630193923825,0.767693373934002,0,0,0,0.359744915166629,0.274537029736055,0.117812402345686,0.202182481573316,0,0,0.48763373908959,0,0,0.136499911407986,0,0,0,0,0,0,0.655894752046633,0,0,0,0.143411352204052,0.392996164052485,0.7133421029625,0,0,0,0.75894634753143,0.349934720244983,0.0962221127255121,0,0,0.188287601553558,0,0,0.443430153536676,0,0.507447609232169,0,0.569647187174163,0,0,0,0.540031437238115,0,0,0,0,2.60124445176006,0.721346064882224,0.213425530045242,0.159426272728822,0.399158742865633,0.766021480529467,0.635020748171649,0,0.280797178113459,0,0,2.50634477090067,0,0,0,0.425846237690326,0,0,0,0.166849141711909,0.19538809540204,0,0,0,0,0,0.18714054040822,0.293016358543788,0.36408156524854,0,0,0.23874448473769,0.296964680832639,1.22864280839693,1.9882952955326,1.54736358051564,0,0,0.211125408127993,0.398495976502139,1.10513566212459,0.251932747854276,0,0.615424027305347,0.311039587661807,0.539210106883961,0.179021174675609,0.511572370226872,0.295930216910801,0,0,0.969332746095218,1.57705766875147,0,0.26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| ||
|short_description=p10@PLEKHA2 | |||
}} | }} |
Latest revision as of 04:16, 18 September 2015
Short description: | p10@PLEKHA2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_PLEKHA2_5end |
Coexpression cluster: | NA |
Association with transcript: | -195bp_to_ENST00000420274, ENST00000521746, NM_021623, uc003xmi.3, uc011lce.1_5end |
EntrezGene: | PLEKHA2 |
HGNC: | 14336 |
UniProt: | Q9HB19E5RHB5A8K727 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
B cell | 8.30e-16 | 14 |
lymphocyte of B lineage | 8.68e-13 | 24 |
pro-B cell | 8.68e-13 | 24 |
plasmacytoid dendritic cell | 3.15e-09 | 3 |
CD1a-positive Langerhans cell | 1.79e-07 | 2 |
immature CD1a-positive Langerhans cell | 1.79e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
regional part of cerebral cortex | 1.79e-23 | 22 |
neocortex | 2.69e-22 | 20 |
cerebral cortex | 2.39e-20 | 25 |
pallium | 2.39e-20 | 25 |
cerebral hemisphere | 5.24e-20 | 32 |
telencephalon | 1.26e-18 | 34 |
regional part of telencephalon | 1.26e-17 | 32 |
brain grey matter | 2.13e-16 | 34 |
gray matter | 2.13e-16 | 34 |
regional part of forebrain | 7.80e-15 | 41 |
forebrain | 7.80e-15 | 41 |
anterior neural tube | 7.80e-15 | 41 |
future forebrain | 7.80e-15 | 41 |
gyrus | 1.79e-12 | 6 |
pre-chordal neural plate | 1.70e-11 | 61 |
regional part of nervous system | 1.18e-10 | 53 |
regional part of brain | 1.18e-10 | 53 |
limbic system | 2.89e-10 | 5 |
frontal cortex | 5.64e-10 | 3 |
neural tube | 6.84e-10 | 56 |
neural rod | 6.84e-10 | 56 |
future spinal cord | 6.84e-10 | 56 |
neural keel | 6.84e-10 | 56 |
neural plate | 1.32e-09 | 82 |
presumptive neural plate | 1.32e-09 | 82 |
neurectoderm | 6.08e-09 | 86 |
brain | 1.73e-08 | 68 |
future brain | 1.73e-08 | 68 |
adult organism | 4.93e-08 | 114 |
temporal lobe | 1.65e-07 | 6 |
central nervous system | 1.91e-07 | 81 |
amygdala | 2.16e-07 | 2 |
middle frontal gyrus | 2.53e-07 | 2 |
structure with developmental contribution from neural crest | 5.51e-07 | 132 |
atrioventricular valve | 7.53e-07 | 2 |